Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <----------DOF2                                                                                    ------->GAMYB                                                                                   <---------MYB46(2)                                                                                   <------------MYB.PH3(2)                                                                                   <---------MYB111(2)                                                                                   <---------MYB52(2)                     ---------->DOF2                                               <---------MYB111(1)            --------->AHL20(2)                                                --------->ANAC58            <---------AHL20(2)                                                --------->ANAC58 ---------->DOF2 --------->YAB1           ----------->GT1 ----------->GT1   ---------->DOF2   acagaaagaggcaataaaatcagaaaagagccaataagacaacaatgtaatataccgagaagattaaaacgacttgagtaaagcaactaactttctatcg  4347900                                                                                      ------>ZmHOX2a(2)                                                                                     <------ZmHOX2a(2)                                                                                    <---------ARR11(3)                                                                                    <---------AGP1                                                                                    --------->ARR11(3)                                                              ------->MYC3         --------->RVE1(1)                                                              <-------MYC3      ---------->DOF2                                                        --------->YAB1        --------->YAB1            <----------DOF2                   <---------AHL20(2)      <---------AHL20(2)            <      <------ZmHOX2a(1)                      <---------AHL20(2)       --------->AHL20(2)    <--------   <---------LBD16    ----------->GT1        --------->AHL20(2)      --------->AHL20(2)----------->HVH21   aaaattcaggaatactttcatatatagtgacaatttcatgaagcaaattaaataactatcaccatatgcaaattaatctatgaaaagatctcacagtcac  4348000                                                        ----------->GT1                                                       --------->DAG2                                                      ---------->DOF2                                                --------->ANAC58                --------->TOE1(3)     ------>ZmHOX2a(2)                          <----------ID1                  --------->TOE2(3)   <---------ARR11(3)                           --------->ANAC58               ----------->GT1 ---------WOX13(1)   <-------TEIL              --------->DAG2           <----------DOF2 ---HVH21  ----------->HVH21                  ---------->DOF2        <-----------GT1              ---   agattgatctcaaatgacctcgatacatcgcattgagatactacagcaaaaagccaaaaagtcaaaagtatatactttactacgttaaaacaatattcaa  4348100                                                                    --------->ETT(2)                                                         --------->TOE2(3)                                                         --------->TOE1(3)                                   <-----------GT1    --------->ARR14(2)      --------->YAB1                              --------->AHL20(2)      <---------ARR14(2)     <---------ATHB12                              --------->YAB1          --------->ARR11(3)     --------->MYB46(3)                      --------->YAB1                 <---------CCA1(2)    --------->MYB46(3)                     <---------ATHB12            --------->YAB1     <---------ETT(2)             ---- ------>TOE2(3)    --------->WOX13(1)   --------->MYB52(1)------>ZmHOX2a(1) -------->P  --------->ANAC46   catcaaaaccccaaaacatatcaatcagacaatgaaattacaaaactgaaatcatatatcctcaaatcggtcgtcatcaaccatggttacactgaattag  4348200                                                                                                    -                                                                                  ------>ZmHOX2a(1) <                             --------->At4g35610                        <---------At4g35610         -     --------->At4g35610     <---------At4g35610                        ----------->GT1     ---------     <---------At4g35610    ------->TEIL          --------->MYB59       --------->At4g35610 <-------- --------->ALFIN1         ---------->DOF2----------->GT1            --------->HSFB2a(2)    --------->MYB46(3) ------>DOF2             <---------ATHB12<---------ZAT6             --------->LBD16      --------->AtMYB61   aaagtgctgctacatagaaatcgaacaatgaagctcaccgatagagtaaaattaggcatgcttccatctccgagagctaaaatcctagagaccaccactc  4348300     --------->ANAC58                       <---------ANAC58     --------->ANAC58                       <---------ANAC58    <------NtERF2                        ----------->HVH21   ------>NtERF2                         --------->WRKY12  --------->DEAR3(1)                   <----------DOF2  --------->At1g77200                 <---------ANAC58 --------->DEAR3(2)                   <---------ANAC58                                           <--- -------->At4g35610                   <---------ANAC46          ---------->DOF2                  <--- ---------At4g35610               <------------CBF             <---------AHL20(2)                ---- ----->NtERF2                 --------->ANAC46            --------->AHL20(1)          --------->O2 >AtMYB61  <---------TOE2(3)  --------->ANAC58            <---------AHL20(1)          <---------O2 -ALFIN1 ---------->DOF2 *TSS --------->ANAC58    <----------DOF2            ------------>CBF  <-----   tctgccgacgctaaaggttgaagatgaagaagacgacattgctttgacgggccttttaaaaatattaaaagagagacacatcaatacctcgtggcccatt  4348400                                  <-------GAMYB<---------TCP16(1)                                 <---------MYB46(3)         --------->LBD16        >>>>>>>>>>>>WRKY18                             --------->GLK1(1)     --------->ANAC46        --------->WRKY38(1)  <---------ALFIN1             <---------GLK1(1) ------AHL20(2)          <---------WOX13(1)    --------->PCF2             <---------LBD16       *TSS --------TBP            <------------CBF<----------DOF2                <---------DAG2       <-------- ----->AHL20(2)       <---------YAB1--------->WRKY38(1)  ------->TEIL  <----------DOF2    <---------AHL20(2) ------TBP <----------DOF2<---------MYB46(3)   <---------PCF5    <-----------GT1         ------------   tatatagaccccgcttaattttgtctgattgttgactgttgacttttagggaccacatgaaactattaaacgacttttcggatttcaaatattcaattga  4348500                                 <---------ICU4                                <---------YAB1                              <---------ICU4                             <---------YAB1                                          --------->ANAC58                           --------->YAB1                                            --------->ANAC58                           <---------ICU4                                            --------->ANAC46                          <---------ATHB12        --------->At4g35610             <---------REM1(2)    <---------YAB1    <---------MYB52(1)        <---------ICU4                 <----------DOF2 ----CBF             --------->TOE2(3)       --------->YAB1                <----------DOF2        --- >CBF       <---------MYB52(1)--------->YAB1 <---------ICU4              ------>ZmHOX2a(1)        ---   gagattatttttctgttaatttcccttaatcatcatcatcgtcttcatcatcatctctctctcttctcttcgttcctctttctttacacgcttgaaaccc  4348600                                                             ------->TEIL                              --------->YAB1              --------->ANAC46                            --------->ARR14(2)            --------->ANAC58                            --------->GLK1(2)      ----------->GT1                           <---------GLK1(2)     --------->MYB52(1)                   ------>ZmHOX2a(1)          <---------ANAC58                  --------------->AGL15       <---------ANAC46                  <---------------AGL15       <---------ANAC55(2)                 ----------------->AGL3       <---------ANAC58            <---------ANAC58--------->ARR11(3)--------->ANAC55(2)            <---------ANAC58<---------ARR14(2)<---------bZIP60(1)         --------->MYB59 ------>ANAC58 --------->ARR14(2)             --------->bZIP60(1)         <---------TOE1(3) ------>ANAC58 <---------ARR14(2)    <----------DOF2      --------->ANAC58<---------TOE2(3)   tagcaatttcaatttcgtttcctctaatagaatcttcatctttttatggcgtaacgttacacgaatttcaacgatttaggttttttttttttttttttga  4348700                                                                                                   <-                                        <---------LBD16                                   --------->ANAC58                            <---------At4g35610       --------->TOE2(3)                   --------->ANAC46                            --------->At4g35610     ------>ZmHOX2a(1)         <-----------TGA1 <-----                           --------->MYB52(1) --------->HSFB2a(1)         <---------ICU4  --------->ANAC58                          <---------WRKY38(1) <---------HSFB2a(1)      --------->YAB1   ------>NtERF2                          <---------WRKY12--------->LBD16              <---------ICU4  --------->DEAR3(1)               ----------->GT1------->GAMYB--------->At5g28300        <---------YAB1 ------>ZmHOX2a(1)              --------->CCA1(2)        <---------ALFIN1<---------MYB52(1)<---------YAB1----------->HVH21         ---------->DOF2<-----------HVH21--------->ANAC46           --------->YAB1   ================   agaatcaaacacaaagatagaaacaatgtcaacggagactaccacgggaaattcctcgttaattccagcatcatcatcatcgtcatcctccgacgcaatc  4348800  Previous    Next  AGI:  At1g12750.1    Description:  rhomboid family protein. similar to ATRBL2 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 2), serine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G63120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63691.1); contains InterPro domain Peptidase S54, rhomboid; (InterPro:IPR002610) Range:  from: 4344983    to: 4348325    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g12760.1    Description:  protein binding / ubiquitin-protein ligase/ zinc ion binding. Identical to E3 ubiquitin-protein ligase At1g12760 [Arabidopsis Thaliana] (GB:Q9LN71;GB:Q2V4N8); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G63170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63689.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 4348496    to: 4350865    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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