Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        >>>>>>>GRF7  --------->ANAC58                                              <-------GAMYB        --------->ANAC58               ---------->DOF2               <---------MYB46(3)--------->ANAC46   <---------DAG2       <----------DOF2     --------->ALFIN1   --------->ANAC58    --------------->AGL15   <----------DOF2      ------>ZmHOX2a(1)  <-------MYC3        --------->ANAC58   ----------------->AGL2 -At4g35610  --------->ANAC58              ------->MYC3   <-------TEIL        <---------DAG2    ----- >At4g35610  --------->ANAC58      ----------->GT1   <-----------RAV1(2)      <----------DOF2   ----- >ZAT2   --------->ANAC46          <---------ZAT6  <-----------HVH21   <-------TEIL<---------------AGL15   agacactttaccctcaagaaagagtcctttgatcagagtgttaaacgtggttgtgtcaggctcatacccaagcttcattacttttcccaaaacagaataa  4325800                             <---------At4g35610                       ---------->DOF2                   --------->LBD16           ---------->DOF2                                  -------                  --------->DEAR3(1)   <---------ARR11(3)                                 <---------HSFB2a(2)                  --------->DREB2C(2)  --------->ARR11(3)                                 --------->HSFB2a(2)                 <---------LBD16     <---------YAB1                                   <---------ANAC58          <-----------GT1    --------->At4g35610                                      <---------ANAC58 ---->ANAC58    --------->MYB52(1) --------->YAB1           <---------YAB1            <---------ANAC46 ---->ANAC58   <---------ALFIN1    <---------ICU4--------->ALFIN1                 <---------At4g35610   gcaaaacaagttttacaacaccggcaaaagcagttgatcatgatattcaaagtgtagatgttatgagcaatcccattcaattccagttgcttgcagaaat  4325900                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                     <---------ICU4                                                                                     <--------HAHB4                                                                                     --------->YAB1                                                                                    --------->ICU4                                          --------->GLK1(2)                       ------>MYB46(1)   --------->ANAC46                      <---------GLK1(2)                        ------>MYB83   --------->ANAC58                  ---------->DOF2                            <---------MYB59   --------->ANAC58             --------->ZAT18                         <------ZmHOX2a(1) <---------ANAC46 --------->ZAT6         <---------HSFB2a(2)                       <------ZmHOX2a(1) <---------ATHB12 -->GLK1(1)             --------->HSFB2a(2)        --------->GLK1(1)   <----------ID1--------->ATHB12   ctaacacgagattgaactgttttgttctggcaatggcactaaagaatctactgaaatcaacaagactaggaagaggacgagacctaatcatttcttggaa  4326000                                                                                                   --                                                                                                   <-                  --------->TOE2(3)                                       <---------------AGL15    <-                  --------->YAB1                                          ===========================               <----------DOF2                                     <---------YAB1   ---------->DOF2--   cagagcaatagcatcatctttcttaatatcaacaataccacttctcaatctctctctgaaacagacattcccattgctaatacttgaaaagtctcgttcg  4326100         <---------GLK1(2)     ---------->DOF2             <---------ATHB12 ------->ZAT2--------------->AGL15                                                         <--------- --------ZAT2======================================================================================== --------At4g35610     <---------ZAT14                                           ---------->DOF2 ============================MADS_MADS         --------->MYB52(1)          --------->WOX13(1) ------->At4g35610 <---------------AtSPL8  --------->ZAT6    --------->CCA1(2)--------->TOE2(3)   cagctagaaaagaaactcgaaatggtacagagcaaatcagttctaagactacctgtcttcaagagatgaggctgaatcaatctcaaagccttcatatttg  4326200                      --------->ATHB51                      <---------ICU4                     --------->ICU4                     <---------YAB1                   <---------ICU4                   --------->YAB1                   <--------HAHB4        <---------ANAC46                  <---------YAB1<---------At4g35610                                     <----------DOF2                  --------->ICU4<---------ZAT2                           --------->AtLEC2           <----------DOF2      --------->At4g35610                   <-------TEIL   <---------ARR11(3)        ------>ZmHOX2a(2)       --------->ZAT2                ------>MYB83           --------->ARR11(3) ------AGL15   <---------YAB1   ----------->RAV1(2)           ------>MYB46(1)  --------->ANAC58 ======MADS_MADS--------->YAB1<-----------RAV1(2)           --------->TOE1(2)  --------->ANAC58   tagtaatcgatctctttatcatcattatttcttcagctgagttgtttgtttttgctctgtaacctacaaacatccatggagacggaagagctttgggaga  4326300                                                                         --------->ARR14(2)                                                                         <---------GLK1(2)                         <----------DOF2                                 <---------ARR14(2)                        --------->TOE2(3)                              --------->LBD16                    --------->YAB1                                    --------->HSFB2a(2)               ------------>CBF                                       <---------HSFB2a(2)            --------->LBD16  <<<<<<<<<GATA-1                          <---------ANAC55(2)          <---------LBD16------>ZmHOX2a(1)                            --------->ANAC55(2)        -------->P <---------ATHB12           <----------DOF2        <---------LBD16 ---------->DOF2 --------->WOX13(1)<-----------GT1                 --------->GLK1(2) ------>ZmHOX2a(2)   aaaaaaagacaacccggttcaatcatcctttatctataaaccggtttacttttattcgttttaaatcaaattccggaatcgctctgatctattactctgt  4326400                      ------->TEIL                   <---------ATHB12                 ------>MYB83                                                        <---------AHL20(2)                 ------>MYB46(1)                                                     --------->AHL20(1)               --------->MYB46(3)                                                    --------->AHL20(2)               --------->AtMYB61                                                  --------->YAB1               <---------MYB55(2)                                                <---------YAB1             ----------->RAV1(1)                                                 --------->ICU4             ------>NtERF2                                                     --------->YAB1       <            --------->ANAC46                                                 --------->AHL20(2)     -            <---------ALFIN1     --------->At4g35610                      --------->AHL20(2)       <-           --------->MYB46(3)    --------->GLK1(1)                   --------->AHL20(2)     <------ZmHOX2a(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<------------CBF    --------->AHL20(2)<---------AHL20(1)   gaaactatacttccccaccaaatgaatgttagagcatctccatcagtagtattggtttcttaaaaactaaaaaatataaaataataataaaataggagag  4326500                                                 <---------TGA1a                                                 <---------O2                                       <                                                 <---------ANAC55(2)                        <--------                                                 --------->ANAC55(2)      --------->YAB1    ---------                                                 --------->O2             -------->ATHB1    <--------                                              ----------->HVH21           <---------ICU4 <---------ICU4                                             <-----------HVH21           --------->ICU4  --------->YAB1                                         ------>ZmHOX2a(1)               <---------ATHB51<--------HAHB4                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->AHL20(2) ---------        --------->DAG2            <---------ARR14(2)               ----------->GT1      --------->ICU4       ---------->DOF2            <---------ARR11(3)              ----------->GT1 <---------LBD16   -  ----------->GT1                 --------->ARR14(2)         <---------YAB1 <---------YAB1 <---------YAB1 ---------ANAC46                  --------->ARR11(3)        --------->AHL20(2) <---------YAB1   <---- ---------->GT1                   <---------GLK1(2) <-----------HVH21    <---------AHL20(2)--------->ICU4 -----ZmHOX2a(1)        --------->AHL20(2)--------->O2      <---------AHL20(2)<---------AHL20(2)-----   aggagtgaaaaaagtttctctgcaaataaactatgagatactcctcgtgtcacatgtcatattttaataggttaaattattattttcggaataattattt  4326600                        -------->HAHB4                        <--------HAHB4                 --------->MYB46(3)                        --------->ATHB51              --------->ANAC58                        <---------ICU4                --------->ANAC46                        <--------ATHB1                --------->ANAC58                        --------->YAB1              <---------ALFIN1                       --------->AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->AHL20(1)                      --------->ANAC58     --------->YAB1    --------->ICU4            --------->ANAC46    <---------AHL20(2) <---------ATHB51          --------->ANAC58 --------->AHL20(2)  --------->YAB1           <---------ARR11(3) ---------AHL20(2)  <---------YAB1            <---------GLK1(2) -AHL20(2)  <---------YAB1 <---------AHL20(2) <---------ARR14(2) >ATHB51--------->YAB1 <---------YAB1         --------->ARR14(2) -ICU4  --------->AHL20(2) --------->AHL20(2) --------->ARR11(3) >AHL20(2) --------->AHL20(2)         --------->AHL20(1) -------->AHL20(2)--------->YAB1      <---------ARR11(3) -----AHL20(2)   <---------YAB1       --------->ARR11(3)                             --------->AtMYB61 ---->AHL20(2)<---------AHL20(2)      <---------AHL20(1)       xxxxxxxxxxxxxxxx>smallRNA(s)    ------   aaataaataataatattatatgataataattaaaaaacaatattttgagatactccacccaattctaccgatgaagatgggcttagaccataacatgtat  4326700  Previous    Next  AGI:  At1g12700.1    Description:  helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12620.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12300.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12775.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885); contains InterPro domain DNA/RNA helicase, C-terminal; (InterPro:IPR001650) Range:  from: 4322911    to: 4326195    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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