Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       ----------->GT1                                                 ---------->DOF2                                               --------->ANAC46                          --------->ANAC58   --------->ANAC58   --------------->AtSPL8 --------->ANAC58   --------->ANAC58   <---------------AtSPL8--------->DAG2      --------->ANAC46 --->YAB1               ---------->DOF2 ------->GAMYB<----------ID1       <---------ALFIN1 ---ATHB12     <---------REM1(1)       <---------ALFIN1                --------->ANAC46 >WOX13(1) --------->AHL20(2)        ----------->RAV1(1)             <-----------GT1     --------->ICU4   aaagtttagtacataaaatgtagccaaaaagccaatttccaacacacacacaaaagagaaaaaccaaaaatttactccaccgattacagaaatgtttaca  4322500                                                                                          --------->ANAC58                                                                                         --------->LBD16                                                                                       <---------LBD16                             --------->ZAT14           --------->ANAC55(1)            <---------ANAC58                             <---------ZAT14           --------->ANAC58          <---------GLK1(2)                            --------->AtLEC2           <---------ANAC55(2)       <---------ARR11(3)                       --------->ANAC58                --------->ANAC58          --------->ARR11(3)                       --------->ANAC58                --------->ANAC46      --------->LBD16 --------                     ---------->DOF2              ---------->DOF2 <---------ATHB12    <---------ANAC58                  <---------HSFB2a(2)            --------->AHL20(2)      <---------REM1(2)--------->ANAC58                  --------->HSFB2a(2)     <---------YAB1     --------->TOE2(3)  <---------RVE1(1)----   taaaacttcacaagtacaatctagaaagcaatgcagagaagagtatgaaaataaaagacgcaacttcaatgactctacccagagattttcgcgcgaaatc  4322600            --------->LBD16           --------->HSFB2a(2)           <---------HSFB2a(2)                                         ---------->DOF2   <---------DAG2                                                     --------->YAB1   --------->ARR11(3)   <----------DOF2   ---------->DOF2                           --------->TOE2(3)      <------ZmHOX2a(1) ->GLK1(1)<---------LBD16                ----------->GT1--------->ANAC55(2)     ---------->DOF2 ----->TOE2(3)   ---------->DOF2       ---------->DOF2  <---------ANAC55(2) <-------TEIL<------ZmHOX2a(2)   cataactttttttccggaaaaaagaaagaatgctagatcgaaacagcaaaaaaccaatacttaatccttgaatcaaagtacagaaagaggatcaagctca  4322700                  <---------HSFB2a(1)                  --------->HSFC1(2)                  <---------HSFC1(2)                  --------->HSFB2a(1)                 ------->TEIL               ------->GAMYB              --------->MYB46(3)                                                      <---------TOE2(3)              <---------MYB52(2)                                           <---------HSFB2a(1)            --------->MYB52(1)       ---------->DOF2       ------->TEIL    --------->HSFC1(2)            <---------DOF5.7(2)  --------->YAB1         <---------ATHB12   <---------HSFC1(2)         <------MYB46(1)        <------ZmHOX2a(2)     ------>MYB46(1)      --------->HSFB2a(1)         <------MYB83  <----------DOF2                ------>MYB83     --------->ANAC58            --         ----------->GT1<-----------HVH21           <---------MYB59    --------->ANAC58  <---------GLK1(1)   aaaattagggaaggtaacgaacctcctttcaccgatcagaaaagagtgatggaacctaatgaatcgaatcgagacgaaatttccgattaagaaatcagag  4322800                                                          <------ZmHOX2a(1)                                                         ----------->GT1                           --                                                  <------ZmHOX2a(2)                                --                                                  ===============HOX2a_HOX2a          <--------------            --------->ANAC58                     --------->ARR11(3)                  --------->ZAT18            --------->ANAC46               --------->At4g35610         --------->WOX13(1)--------->ICU4            --------->ANAC58            <---------At4g35610         --------->ANAC58--------->ANAC58           <XXXXXXXXXXXXXXXXXXXXMIR869.1--------->At4g35610   --------->GLK1(1) ---------->DOF2 <---- --------->GT1                --------->ARR11(3) <---------ARR11(3) --------->ANAC58--------->ANAC58   agggaaacaatagcacgaaaattgaatcaatagatgttgatgagcagcgaagatcgaagaggagaaaccctagcaatctcgatgaagcgcaatatttggg  4322900                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                              --------->ARR11(3)                              <---------AGP1                              <---------ARR14(2)                        --------->ARR11(3)    --------->DAG2            <---------ARR11(3)                       <---------CCA1(2)         <---   ---------->DOF2            --------->ARR14(2)            <---------ANAC58          ------------>CBF ------->ANAC58               --------->AGP1                <---------ANAC58    ------->TEIL <------- ------->ANAC58             ----------->ARR10               <---------ANAC46 ----------->HVH21   <--- ---AGL3             --------->AtLEC2       --------->ARR11(3)     <-----------TBP ----------->GT1  - ------ID1        <---------ATHB12         *TSS         <------------CBF<---------ARR11(3)   --------   gacgaaaaagctaagcccaaatcatgcagatagatcttcgtttagagatgttgagagagattgtgtgatatatatatctctgaaccggtacaatgtcgat  4323000                                                                                                 <---                                                                                                <----                                                                                         --------->YAB1                                                                                      --------->GLK1(1)                                                                                      <---------GLK1(1)                                                                                     <---------ARR11(3)                                                                                     --------->ARR11(3)                                                                                     --------->ARR14(2)                                                                            --------->AHL20(1)  <----                                                                            --------->ARR11(3)  <----                                                                            <---------AHL20(2) <-----                                                                            <---------AHL20(1) ======                                             <---------ATHB12            --------->YAB1<---------ARR11(3)     --------->MYB52(1)                  ------------>CBF             <----------DOF2<---------ARR14(2) -----HAHB4                    <-----------------AGL1                 --------->TOE2(3)--------->ARR11(3) --ETT(2)      --------->TOE2(3)<---------HSFB2a(2)               <----------DOF2   <------ZmHOX2a(1) ------ICU4    --------->TOE1(3)--------->HSFB2a(2)           <---------ANAC58      ================= -------->YAB1 --------->YAB1  <-----------------AGL2         <---------ANAC58    <---------TOE2(3) --->GT1----------->GT1      ------>ZmHOX2a(1)                <---------ANAC46    <---------TOE1(3) <   aattagaaaccggtttatcttaaaccttctccttctcgatttggccaatgagttttttgtttttgcgtctttctttaatattttgaggatatcatcagga  4323100                           --------->ARR11(3)     <----------DOF2 <------ZmHOX2a(2)     <---------MYB52(1) ----------->RAV1(1) ---ZmHOX2a(2)      <---------ARR14(2) -------ARR10       --------->AGP1 <------MYB83           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -----ARR11(3)      --------->ARR14(2)                    --------->AtLEC2 -------HVH21 ------->GAMYB<---------ARR11(3)      --------->GLK1(2)                  --------->ANAC55(2) -ZmHOX2a(1) --------->MYB46(3)    <------MYB46(1)--------->ARR14(2)        --------->ANAC46 ===========================HOX2a_HOX2a           <---------GLK1(2)         --------->ANAC58        < ===HOX2a_HOX2a<-----------HVH21 <--------P       <---------ARR14(2)        --------->ANAC58  <------ ---------ALFIN1   --------->At4g35610 <------NtERF2  <---------YAB1   --------->WOX13(1)   ---------   tcacaccctttggtaaccatcagatccaacatctggttggcctcatctaggcgattctccttgcaaaacccatctatcaaggaactatatgtaatagtat  4323200                                                             --------->ANAC58                                                             --------->ANAC55(2)                                                             --------->ANAC58                                              <---------HSFB2a(2)                  --------->At4g35610                                              --------->HSFB2a(2)       --------->AHL20(2) ------ZmHOX2a(1)                        ------>NtERF2       --------->ANAC46      <---------At4g35610 ---ZAT6                          <---------ARR11(3)         --------->AtLEC2  <-----------HVH21 >YAB1             --------->YAB1 --------->ARR11(3)         <---------ANAC55(2)   <---------ZAT2   taggagctatacctcgttgaatcatctccttgtgtagttcttcggcctctcgaagttttagtcacgcaaatgaaaaaaatatgtcagctaatactcagat  4323300                                                        --------->YAB1                    <---------ICU4                    ------>MYB46(1)                    --------->YAB1                    --------->ANAC58              --------->At4g35610                    <--------ATHB1                    ------>MYB83                  <---------ZAT2                   <---------ATHB51                   --------->ANAC58     <-------TEIL               --------->AHL20(2)                --------->ANAC58        --------->ARR14(2)        ----------->GT1       <---------At4g35610--------->ANAC58        <---------ARR14(2)        <---------ANAC55(2) <-----------RAV1(2)  --------->ANAC46    <---------LBD16--------->ZAT2     --------->ICU4--------->ICU4               --------->ZAT18 ------->TEIL        <---------At4g35610    <----------DOF2<---------ATHB12  <----------DOF2  --------->AtLEC2<---------ANAC46       --------   ttatggcattatgtaaattcaataatggtttcagatgttctttagtgaagcacaccaagcacaatgtatgtttcggatacatcatcagctccctaaccaa  4323400  Previous    Next  AGI:  At1g12680.1    Description:  PEPKR2 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 2); kinase. similar to PEPKR1 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G12580.1); similar to CPK29 (calcium-dependent protein kinase 29), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G76040.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61645.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/thr Range:  from: 4319884    to: 4322943    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g12700.1    Description:  helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12620.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12300.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12775.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885); contains InterPro domain DNA/RNA helicase, C-terminal; (InterPro:IPR001650) Range:  from: 4322911    to: 4326195    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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