Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->DAG2                                                    --------->ZAT6                     ==============                                           --------->ANAC46                            ---------->DOF2      --------->O2                    <----------DOF2      ---------->DOF2          --------->YAB1    <---------ALFIN1            <----------DOF2  ----------->HVH21           --------->ANAC58 ------>MYB46(3)           <------ZmHOX2a(1) <---------ATHB12                --------->ANAC58 <------   acaatcccacttctcaatctctctctataggagactttccctttcccatcactgacactagaaaagactcgtccatagcaagacaagaataaagcagttc  4296700                    --------->TGA1a                                                              ----                    <---------ANAC55(2)                                                          ----                    <---------O2                                                                 <---                    <---------ANAC58                                                             ----                    --------->ANAC55(2)                                                          <---                    <---------ANAC55(1)                                                          ----                    <---------bZIP60(2)                                                          ----                    <---------TGA1a                                                  <---------AHL20(2)                    <---------ANAC58                                                 --------->AHL20(1)                    --------->O2                                                     --------->AHL20(2)             --------->HSFB2a(2)       --------->LBD16        ---------->DOF2       --------->AHL20(2)     ----------->RAV1(2)             <---------LBD16          ======================================= =============================bZIP_DOF--------->ANAC46   --------->GLK1(2)--------->AHL20(2)     <--- ---ARR14(2) <---------HSFB2a(2)--------->WOX13(1)    <---------TOE2(3)   <---------AHL20(2) <-------   ttagagtacctgtctcgagaagacgtgtctgaatcaatccccgcatgactcaagttaagaatttgaaagctctgatttaaaaaaaaaaaaattggagtca  4296800      <---------MYB52(1)              --------->ANAC46 ----->ANAC58                         --------->ANAC58 ----->O2                             --------->ANAC58 ------ANAC55(2)           <---------RAP2.6(2) ----->ANAC58          --------->MYB52(2) ------O2              <---------MYB46(3)          --------->At4g35610  --------->ANAC58      <------ ----->TGA1a  <---------YAB1 <---------At4g35610   <---------At4g35610  --------->ANAC58  --------->CCA1(2) ----->ANAC55(2)      <---------TOE1(2)  >>>>>>>>>>>>>>>>>LFY     <-----------HVH21      --------->ARR11(3) ======bZIP_DOF      <---------MYB52(1)--------->MYB46(3)        <----------DOF2     ---------->DOF2 ------TGA1a--------->At4g35610   <---------HSFB2a(2)      <-----------GT1    --------->AHL20(2) <--- ----HVH21  <---------At4g35610   --------->HSFB2a(2) <---------ICU4    --------->ANAC46 <---------ARR11(3)   cgtcttcggttttgtgctgattcgtttgttcggcttccacaagcaccaatgtctgctcattacacctctttcacacacaataaaacaaaaagatttaagc  4296900                                                                                   <---------ANAC58                                                      ----------->GT1     --------------->AGL15                                                    ---------->DOF2       <---------------AGL15                                          <---------------AtSPL8         <-----------------AGL2                                   --------------->AGL15                 ----------------->AGL3                                   <---------------AGL15                ------>MYB83         <---------YAB1           ----------------->AGL3                ------>MYB46(1)   --------->ARR11(3)             <-----------------AGL2             --------->HSFB2a(1)   <---------ARR11(3)             <-----------------AGL3             <---------HSFB2a(1) ---TOE1(3)               --------->MYB46(3)    --------->TOE2(3)  <-----------GT1 <---------ANAC58 - -------DOF2 <---------LBD16      =========================================================MADS_MADS<   tttaagaacttctgattcggaaatttcaacaacgatgctatatatgggtaccttgaaagtgaaaacttgaaaccttccaattctagcgagttatcgaaat  4297000                                                                                                    -                                                                                                   <-                                                                                                   --              ------>NtERF2                                                                --------->ARR11(3)       <---------ARR14(2)                                                         *TSS--------->TOE2(3)       --------->ARR14(2) --------->ANAC58                                     --------->YAB1 <------    <---------MYB59       --------->ANAC58                               --------->ANAC58  <---------ARR11(3) -------->ETT(2)       <------NtERF2                                     --------->ANAC58 --------->GLK1(1) ---------ETT(2)     --------->ALFIN1  ---------->DOF2   <---------------------WRI1   --------->TOE1(3)   tgtcgacccaattcgccaacaaggtggcactaaatctacagaaaagaaaacccagacacatcgatacgaagaacgaagcaatgagaaacctgaaatcttt  4297100                     --------->LBD16     --------->At4g35610          <---------ANAC58       ----------------->AGL1          <---------ANAC58       <---------LBD16   --------->HSFB2a(2)          ------->TEIL    <---------LBD16   <---------HSFB2a(2)  <--------P    <------ZmHOX2a(2) <-------TEIL      <---------LBD16   --------->ARR14(2) -------->CCA1(2) --------->MYB52(1) <-----------HVH21       <-----------GT1 --------GLK1(2) <---------ARR14(2)  <---------ARR14(2)   <----------DOF2                        <--- ------->ARR11(1)--------->ARR14(2)--------->LBD16   <--------P                           --------->AHL20(2) ----DOF2--------->ATHB12       --------->MYB52(1)--------->LBD16                  <---------MYB46(3)   agattcgagaatgcttgaagaaccgggttgaatgtaccggatcagataaaaccgggttgtctttaaccttctgtttcattcggagttgttgataaaatgt  4297200                           ------->TEIL                    <---------AHL20(2)                    --------->AHL20(2)                    <---------AHL20(1)                 --------->YAB1               --------->AHL20(2)                <---------ETT(2)                               -----             <----------DOF2                <----------DOF2    <---------ANAC55(2)            -------    <-----------GT1 --------->AHL20(1)   <-----------GT1       --------->ANAC55(2)            <------ ---------------------ANAC81    ---------->ID1   --------->ETT(2)      <------ZmHOX2a(1)   <---------ALFIN1   tttttttttcttctccttttaataaaatgaatttgtttttttttttctttgtcgaccagattaatacttaataggatagtttttttttatcgaccacgtt  4297300                                         <---------MYB59                                         --------------->AGL15                                        <-----------------AG                                   <---------MYB46(3)          --------->ATHB12                                --------->MYB52(2)             <---------AHL20(2)                              <--------P<-----------------AGL1<---------AHL20(2)                             <-------GAMYB                    --------->AHL20(2)                            <------MYB46(1)            =================================HOX2a_HOX2a                            <------MYB83----------------->AGL1<---------AHL20(1)                            --------->MYB55(2)         <------ZmHOX2a(1)                  <------ZmHOX2a(2)                            <---------MYB46(3)        <----------ID1                     --------->ARR11(3)                            --------->MYB52(2)      --------->DAG2                       <---------ARR14(2) ---->WRKY12              <--------P    --------->ANAC58      --------->AHL20(1)         --------->ARR14(2) >MYC3 --------->DAG2    <-------GAMYB  --------->ANAC58    ------->TEIL                 <---------ARR11(3) -MYC3---------->DOF2   <---------MYB46(3)         ---------->DOF2               ------>ZmHOX2a(2)   gaacttcaaaaagttttttttttttttggttggttagtggttacccaatttgaaaaaggacgaatttattggattgaatttgatccttgaagatcgagct  4297400                                                   <---------YAB1                                                 <---------ICU4                 <-----------GT1                 --------->YAB1                --------->AHL20(2)   ---------->DOF2--------->YAB1            --------->AHL20(2)  ----------->GT1 --------->ICU4                                      -         --------->TOE2(3)    ---------->DOF2  --------->AHL20(1)       --------->ZAT14           ---         --------->TOE1(3)   --------->YAB1   --------->YAB1          --------->ANAC46<-----------RAV1(1)         --------->YAB1--------->TOE2(3) <----------ID1            <---------ZAT18   <---------ARR11(3)      <-----------GT1 --------->REM1(1)  ----------->GT1           --------->ZAT18   --------->ARR11(3)   aaacaattttaccataaattaactacatcaataaaagtaaaaagagaaaaataatgatatatatcgaagcacactaaacttgtttaagatgttggagaaa  4297500                                                                     --------->LBD16                                                                    <---------TGA1a                             <---------ICU4                         --------->TGA1a                         >>>>>>>>>>WRKY11                           --------->O2                         >>>>>>>>>>WRKY6                            --------->ANAC46                        --------->WRKY38(1)          ------>ZmHOX2a(1)----------->HVH21                        --------->WRKY45      --------->AHL20(2)    <---------O2            --------->ARR11(3)                <---------AHL20(2)    --------->ANAC55(2) -------->ANAC46<-----------GT1              --------->AHL20(2)<---------At4g35610 ------>ZAT6<---------ARR11(3)  <-----------GT1      --------->LBD16<---------ANAC55(2)   acactaaacaaggagatattaccaagttgactaattacacatctagattaaattcctgataatacatctcccgtgacaaaaacttcgatattgttcatat  4297600  Previous    Next  AGI:  At1g12620.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12300.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G22470.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12775.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4294592    to: 4297082    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version