Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->ICU4                                   --------->AtLEC2                                   --------->AHL20(1)                              <---------WOX13(1)                                   --------->AHL20(2)                              <---------YAB1                                   <---------AHL20(2)       --------->YAB1  <---------AHL20(2) --------->ALFIN1                 --------->AHL20(2)     ------>ZmHOX2a(1)  --------->ATHB51 ---ZmHOX2a(1)      --------->WRKY38(1)  <---------YAB1  <---------------AGL15  <---------YAB1   ----   gatgtggatgctgtttgaattgttgactaatacaaaaaaaattatgaattgtttttttcctataacaagttgtatgaataatttgattaatgcaaaattt  4274200                              <---------ICU4                                                 <-------                              -------->HAHB4                                <---------YAB1 <---------ICU4                             <---------ATHB51       <---------At4g35610<---------AHL20(2) --------->ICU4                             --------->ICU4    <---------TOE2(3) --------->YAB1      ----------->GT1                <---------TOE2(3)     ----------->GT1          <---------WOX13(1)<---------At5g28300    ----------->HVH21      --------->YAB1  --------->YAB1   <-------TEIL    <---------AHL20(2)<------ ------->GT1   <-----------GT1--------->YAB1   <---------YAB1--------->ATHB12   <-----------GT1   tgtgaaatgacattttctaacgatttttgtaataatgaaatcgtataataagatagctcatattcattgatatttttttttattacggtgtaaatattac  4274300                                                                                   --------->ALFIN1                                                                                   <---------MYB46(3)                                                                                <------MYB46(1)                                       <---------MYB46(3)                       <------MYB83     <---                                   --------->DAG2                              --------->MYB46(2)<---   <-----------GT1         <---------YAB1               ------->TEIL           --------->MYB111(1) --YAB1                    ----------->GT1           --------->AtLEC2          --------->MYB59   <--- -----GT1         ---------->DOF2 ---------->DOF2------->TEIL              <---------ZAT6   <--------   tgaattatcgatacaaaaacaaaagtatgttgataaaaaagttgttagatgtatcatgcatttatgcaatctatctggtgttaggttgtggcatcttttg  4274400                                           --------->ICU4                                        <---------AHL20(2)                                        <---------YAB1                                        --------->AHL20(2)                                       --------->AHL20(2)                                       <---------AHL20(2)                                     <---------YAB1                                    --------->AHL20(1)                                   --------->AHL20(2)                                   --------->ATHB51                                   <---------AHL20(2)                       <---------AHL20(2)                          --------->AHL20(1)                                --------->AHL20(2)       <---------AHL20(2) <---------AHL20(1)                          ----------->RAV1(1)    --------->YAB1        --------->ARR14(3)                        --------->LBD16 --------->YAB1           --------->ARR11(3)                       --------->ANAC46 ------ANAC58             <---------ARR14(2)--------->YAB1         --------->ANAC58 ------ANAC46             <---------ARR11(3)<---------ICU4         --------->ANAC58            ------ ------ANAC58             <---------ARR14(3)--------->ATHB51       --------->RAP2.6(2)        ------- --DOF2--------->AHL20(2) --------->ARR14(2)-------->HAHB4  <---------TOE2(3)         <----------DOF2   cttgcataataaaacatttttaaaacaatatcttgaattattttaattatcgcgagacaattaagaaaaccgcaacatttaaatatgtcttttttgcctc  4274500                                                               <---------AHL20(2)                                                               <---------AHL20(1)                      <---------AHL20(2)                       --------->AHL20(1)                  <---------RVE1(1)                            --------->AHL20(2)         <---------ICU4<---------YAB1                       <---------ICU4 --------->AHL20(2)   --------->YAB1                       --------->AHL20(2) <---------AHL20(2)   --------->AHL20(2)                   <---------ATHB51 ----------->TBP <---------ARR11(3)                        <---------AHL20(2)               *TSS----- ------>CBF      --------->ARR11(3)                        --------->ICU4                --------->MYB52(1) -->TOE2(3)----------->HVH21--------->TOE2(3)   ----------->HVH21                    <---------------   aatataaatactaatgacagatattaatattcttagaaaaacataagtatttgacagataaataattaattaagatgcttcagtttcaactaaacgaata  4274600                                                                                      --------->AtMYB61                                                                                      <---------ALFIN1                                                                                     --------->MYB46(3)                                                                                    ------>MYB46(1)                                                                                    ------>MYB83                                                                                   --------->ORA47(1)                                                                                  <---------MYB46(2)                                                                                  --------->MYB46(3)                                                   <---------ARR14(2)             <---------MYB55(2)                                                   --------->ARR14(2)        <-----------HVH21                                                   --------->GLK1(2)         ------>ZmHOX2a(1)                                                  <---------GLK1(2)  <---------MYB46(3)  --------->DEAR3(1)                                                  <---------ARR14(2)<--------P    --------->DEAR3(1)                                       <<<<<<<<<<<<<<<<<LFY        <---------MYB52(1)<---------MYB55(2)    --------->MYB52(1)        --------->ANAC58   <------NtERF2     <-------GAMYB  --------->DEAR4(1) ----->DOF2                   --------->ANAC58 <---------ANAC46   --------->LBD16 --------->DREB2C(2) ------WRI1---------->DOF2<-----------HVH21   <---------LBD16   <---------LBD16  --------->DEAR3(2)<-   aagaagtaactgtgaaagagcgaagaagagtcacacaaaaaaaacaatggcggaatcttcagagcctccggttgttctccttcaccgaccaccgtctcta  4274700                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                 <---                                                                                               <-----                                                                                             ------>NtERF2                                                                                             <-------                                                                                            ---------                                            --------->At1g77200                          --------->O2                                            --------->ANAC46                             --------->ANAC46                                            ----------->HVH21                            <---------O2                                            <---------ETT(1)                             --------->ANAC58                                            --------->DEAR4(1)                           --------->ANAC58                                 --------->ZAT14                                      ----------->HVH21                                 --------->SPL7                                       <---------MYB52(1)                               --------->LBD16                                       <-----------TGA1                               <---------SPL7----------->RAV1(1)                    --------->ANAC58                              <---------ANAC58  --------->HSFC1(2)                  --------->ANAC46                              <---------ANAC58  <---------HSFC1(2)                  --------->ANAC58                          --------->GLK1(1) --------->DEAR3(1)                      --------->TGA1a<-             --------->GLK1(2)<---------ANAC46 <---------ALFIN1                     <---------O2-----            <---------ARR14(2)<---------ANAC55(2)                                   --------->O2<----            <---------GLK1(2)--------------->AtSPL8                                 --------->bZIP60(2)            --------->ARR14(2)--------->ANAC55(2)                                  --------->LBD16---          ----------->ARR10  --------------->AtSPL3      --------->At4g35610----------------------->TaNAC69(2)  <---------AtLEC2        <---------GLK1(1) --------->DREB2C(2)       --------->LBD16<-----------HVH21 ---------DOF2       ----------->GT1  --------->YAB1  ------>ZmHOX2a(1)  <---------ZAT2<---------ALFIN1   actttcatggacgagattctgactcgtgaattccgtactctcatcaccgacacttcctcatcggaatcactcccgagcttcttcccccgtcacgcctcct  4274800      <---------HSFB2a(1) ------->LBD16                   ----------->HVH21 ---->NtERF2                    <---------MYB52(1)                                             ------ ------>ANAC46                 --------->LBD16                                               <------NtERF2 ------>ANAC58                <---------HSFB2a(2)                                       <---------ANAC58 ------LBD16                 <---------LBD16                                     <---------ZAT14 ----ALFIN1                 --------->MYB52(1)                                   --------->ZAT18    < --ATERF1(1)         <------NtERF2  --------->MYB46(3)                  --------->GLK1(2)   ------>NtERF2 >DEAR3(1)  <---------MYB52(1)--------->HSFB2a(2)                      <---------GLK1(2)<---------ANAC58 ----------HVH21     --------->At4g35610                               --------->ARR14(2)   <-------- ->ZmHOX2a(1)       ----------->RAV1(1)                --------->At4g35610       <---------ZAT18   <- -----ATERF1(1)   <---------At4g35610           <----------DOF2        <---------ARR14(2)  <---------DEAR3(1) ------>ANAC58    --------->At4g35610      ------->TEIL<---------At4g35610       --------->ZAT14<----   ccgccagagccttcgttatcagcggcagacttccggtaaccgatgaactcctttctcatctcccttctctccagattctcgtctgcactagcgtcggcat  4274900                                                                                           <---------MYB46(3)                                                                                          <---------DEAR3(1)                                                                                         <------NtERF2                                                                                         <---------MYB52(1)                                                                                       --------->DEAR3(1)                                                                                       <---------bZIP60(1)                                                                                       <---------ATERF1(2)                                                                                       <---------ANAC58                                                                              <---------YAB1     <---                                                                             <---------ANAC46<-------                                <------NtERF2                               <---------At4g35610  <---                   --------->ANAC58                  <------NtERF2      <---------ANAC58<---------RAP2.6(3)                <------NtERF2 <------NtERF2    ------>MYB46(1)          <---------bZIP60(2)<---------DEAR3(2)               --------->DEAR3(1)            --------->DEAR3(1)         <---------ANAC58------>NtERF2 --------------->WRI1     <-----------HVH21  --------->AtMYB61        <---------TGA2(2)<---------O2 ------ZmHOX2a(2)  --------->ANAC58  --------->TOE2(3)               ----------->HVH21 <---------ANAC46 -DEAR3(2)    --------->RAP2.3(1)  <------NtERF2    ------>NtERF2    ----------->TGA1<---------ZAT18 ----------HVH21------>NtERF2<---------LBD16--------->MYB46(3)     <---------At4g35610 --------->ATERF1(2) --NtERF2 ------>ZmHOX2a(2) --------->DEAR3(1) ------>MYB83        --------->At4g35610 <---------ANAC58   cgatcacatcgatctcgccgcatgcaagcgtcgcggcatcgttatcaccaacgctggcaacgcgttttccgatgacgttgctgattgtgccgtcggtttg  4275000                                       <-----------HVH21                                       <---------SPL7                                      <---------ANAC58                                      <---------ANAC55(2)                                      <---------ANAC58                                      <---------ANAC46                                   <---------MYB52(1)                                  <-------GAMYB                                 <---------MYB46(3)                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                               <---------ARR14(2)                               --------->ARR14(2)                             --------->DEAR3(1)                           <---------At4g35610                           --------->LBD16                           ------>NtERF2                          --------->RAP2.6(2)                          --------->RAP2.3(2)                          <---------ATERF1(2)                          --------->DEAR3(1)                          --------->ATERF1(2)                         --------->RAP2.3(1)                         --------->DEAR3(2)                                 --------->WOX13(1)                       ------>ZmHOX2a(1)                               --------->GLK1(1)     <---------ANAC58  =================HOX2a_HOX2a                   <---------ARR14(2)     <---------ANAC58  <-----------RAV1(1)                        <---------LBD16            <------- ------ANAC58          ================HOX2a_HOX2a             >>>>>>>>>SARD1           <---------TOE2(3) --MYB52(1)          ----------->RAV1(2)         <---------MYB52(1)   --------->ARR14(2)<---------TOE1(2) ------ANAC58--------->LBD16<------NtERF2--------->SPL7        >>>>>>>>>CBP60g          <---------TOE2(2)   cttattagcgttctccgtcgtattcctgccgccgatcgttacgtccggtctggtaattgggcgaaatttggggattttcaattagggtccaaggtttgtt  4275100  Previous    Next  AGI:  At1g12540.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein (bHLH125) [Arabidopsis thaliana] (TAIR:AT1G62975.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81995.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 4273135    to: 4274204    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g12550.1    Description:  oxidoreductase family protein. similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT2G45630.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24440.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139) Range:  from: 4274592    to: 4275979    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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