Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->ANAC46                          --------->MYB46(3)                        --------->ARR14(2)                <---------TGA1a                --------->TGA1a                              <---------ARR11(3)                <---------O2                         ----------->RAV1(1)                --------->O2----------->RAV1(1)     --------->ANAC46           ------->GAMYB<---------ARR14(2)        --------->ANAC46                                  <     --------->ANAC46  <---------CCA1(2)          --------->ANAC58                                 --     --------->ZAT6<-----------HVH21              --------->ANAC58                                --- ---->ANAC46  <---------ALFIN1             <---------HSFB2a(2)        --------->At4g35610         --- --REM1(2) ===============MYC_MYB          --------->HSFB2a(2)   --------->ZAT6               -------   agcattaacacaaccctcacatgtcatatccaccataaactcagtctggaacacacaacacaagttctcactagctcaaatccaaaaattgttgtataaa  4268500                                             <------ZmHOX2a(2)                      <---------ICU4                                             =============HOX2a_HOX2a               --------->YAB1    <------ZmHOX2a(1)       --------->At4g35610    ------>ZmHOX2a(1)               <---------ATHB12 -------TEIL ---------->DOF2----------->RAV1(2)  ----------->RAV1(2)          <---------ANAC55(2) ------->CCA1(2)            --------->ZAT2  --------->ARR14(2)                --------->ANAC55(2) ------>ARR11(1)           --------->GLK1(2)<---------ARR14(2)          --------->AHL20(2)          < ------>ARR11(3)        --------->ANAC46  ----------->ARR10       <---------At4g35610           ----- --->DOF2<---------ANAC55(2)<---------At4g35610 ------>ZmHOX2a(1) --------->At4g35610          <-----   gatacaggattacgagaaagacttacaagaagctgaggcatggctcgatcctcctgcaaatcaaattcagctacttaaatacttaatcatcgaatcagga  4268600         --------------->AGL15         <---------------AGL15                                                               <------NtERF2        <-----------------AG                                                              --------->ATERF1(1)        ----------------->AGL2                                                        --------->At4g35610     --------->DAG2                                                                   <---------ZAT14    ---------->DOF2                                                        --------->YAB1<---------ATERF1(1) ----------ID1                               <----------DOF2              <------ZmHOX2a(2)--------->RAP2.6(2) ----->DOF2                      ---------->DOF2    --------->AtMYB61  <---------YAB1 <---------At4g35610 -ZmHOX2a(1)            ----------->GT1 ---------->DOF2  ----------->RAV1(2)          --------->ZAT14   aagcgaaaaagctcaaattggaaatagggtatttcaaaagttcaaagctttaaaccaaaacctgatggagattacgatcagaagtgagagcagtcgccat  4268700                                              ------>ZmHOX2a(2)                                             ====================HOX2a_HOX2a                  <------ZmHOX2a(1)                    ---------->DOF2          ================HOX2a_HOX2a                      =======                    ========================bZIP_DOF                                   <------MYB83                <---------ANAC46             <------ZmHOX2a(2)                         <---------MYB46(3)               <-------TEIL                 --------->ARR14(2)                         <------MYB46(1)            <---------HSFB2a(1)             <---------ARR14(2)                        --------->MYB46(2)            --------->HSFB2a(1)      --------->REM1(2)                                --------->MYB55(2)            --------->HSFC1(2)      --------->ALFIN1                                  --------->MYB59            <---------ZAT2        <---------O2===================HOX2a_HOX2a          --------->MYB111(1)            <---------HSFC1(2)    <---------ANAC58                                    <---------AtMYB61            --------->ZAT2        <---------ANAC58                                    --------->MYB111(2)           ------->TEIL           <---------ANAC46                                    <---------MYB46(3)       <---------TOE2(3)          --------->TGA1a         <------ZmHOX2a(1)          <--------P      --------->MYB52(1)          <---------TGA1a        ----------->GT1             <---------MYB55(1)      <---------DOF5.7(2)         <---------bZIP60(2) <------ZmHOX2a(1)             <-------GAMYB   --------->At4g35610            --------->O2===============HOX2a_HOX2a      --------->CCA1(2)   >>>   <---------At4g35610           <-----------------------TaNAC69(2)        <---------TOE2(3)  =======   cggagagctaacgaagcttcgtgaaagtcccaagagacgtggagacgatcgggagaggaaggagaaattgagagattgagatttggggttggtagaggaa  4268800                                                         <---------At4g35610                                                        ------>NtERF2                                                       <---------DEAR3(1)                                                      --------->RAP2.6(3)                                                    ----------->HVH21                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                                <------NtERF2                                                --------->At4g35610                                                <---------At4g35610                                                --------->ATERF1(1)                                               ------>NtERF2                                               <---------ATERF1(1)                                               <---------MYB46(3)                                               <---------DEAR3(2)                                               <---------RAP2.3(1)                                               <---------ERF1                                              --------->ATERF1(2)                                              <---------DEAR3(1)                                              --------->DEAR3(1)                                              <---------RAP2.6(2)                                              <---------ANAC46                                             --------->DREB2C(1)                                             <---------DREB2C(1)                                             --------->ATERF1(1)                                             --------->RAP2.3(1)                                             <------NtERF2                                             <---------At4g35610                                             --------->DEAR4(2)                                            <---------RAP2.6(1)                                            <---------ERF1                                            ------>NtERF2--------->At4g35610                                            <---------ATERF1(1)                                            <---------RAP2.3(1)                                            <---------RRTF1(1)                                            <---------DEAR4(2)                                            <---------ORA47(2)                                           <---------RRTF1(3)                                           <---------RAP2.6(2)                                           --------->ATERF1(2)                                           <---------ATERF1(2)                                           <---------RAP2.3(3)                                           <---------RRTF1(2)       >>>>>>>>>TBF1                       <---------DREB2C(2)               <---------TGA1a    >>>>>>>>>TBF1                          <---------RAP2.3(2)            --------->WRKY12 >>>>>>>>>TBF1         ------>ZmHOX2a(2)   --------->ALFIN1               ----------->HVH21 ============================HOX2a_HOX2a   <---------DEAR3(1)            <---------MYB52(2)     <---- >>>>>>TBF1           <------ZmHOX2a(2)   <---------ABI4(1)             <---------At4g35610     ----- =============================HOX2a_HOX2a --------->ATERF1(1)    <---------MYB46(3)           -------   gaagaagaagaagaagagaaggcgatcgcgatgggaatcgcagaggcggcggctacgacggctgaagtcgttgccactgacctgagaattgatgccatta  4268900                                                           --------->YAB1                                                          <---------YAB1                                                         <-----------GT1                                                       <---------AHL20(2)                                                      --------->AHL20(2)          ----------->GT1                                               <----------DOF2       --------->AHL20(2)             <                                              --------->TOE1(3)  --------->AHL20(2)        --------->LBD16  <---------ANAC58      *TSS                  --------->TOE2(3)  <---------AHL20(2) <---------MYB52(1)  <---------ANAC58   <----------DOF2       ------->GAMYB<-----------GT1        ------------>MYB.PH3(1) -----ARR11(3)   <---------RAP2.6(2)      --------->MYB46(3) <---------YAB1  <---------AHL20(2)    <- ---->ARR11(3)   <---------RAP2.3(2)      <---------MYB111(2)--------->ICU4 --------->AHL20(2)  <---- -->ICU4        <---------LBD16----------->HVH21 --------->AHL20(2)  <---------AHL20(2)    <---------LBD16   tcttgcttcttcagtttttgcggctttttatttctgacctttcaacaacctttaaattttatcatttttaattaaaaaataaatcggttaatctggggat  4269000                                <-----------RAV1(1)                         --------->At5g28300                               --------->AHL20(2)                      <---------ZAT14                          --------->TOE1(3)                      <---------ZAT18                          --------->TOE2(3)                      --------->ZAT14                       <-----------GT1--------->YAB1         ----------->GT1----------->GT1             <------MYB83          <---------ATHB51      <----------DOF2 --------->ZAT18               <------MYB46(1)       <---------ATHB12         <- ---------ICU4  <---------AHL20(2)      <---------YAB1<---------ZAT6 --------->ANAC46             <-- --------YAB1  <---------AHL20(2)    <---------YAB1<---------AtMYB61 --------->ANAC58            ---- --ZmHOX2a(2)  --------->AHL20(2)<-------GAMYB     <---------MYB46(3)--------->ANAC58    ----------->GT1   cactattactttggtaaattaatgtgcagtaattctgttgttattacaaacagttggtgttattaccttaaacgcaataatatttcagagggagtttatt  4269100                                                         <--------HAHB4                                                         <---------ICU4                                                         --------->YAB1                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                           --------->ARR11(3)                                           <---------ARR14(3)                                           <---------ARR14(2)                                    <---------GLK1(1)   --------->ICU4                                    --------->GLK1(1)   <---------YAB1                              =====================HOX2a_HOX2a                              <------ZmHOX2a(1)       --------->YAB1                              ======================HOX2a_HOX2a                              <-------                             --------->ZAT2--------->ARR14(2)                                --------                             <---------ZAT2<---------ARR11(3)                               <--------                           <-----------RAV1(2)        <---------ICU4              --------------->AtSPL8 --------YAB1           --------->ANAC58   <-----------ARR10--------->AHL20(2)    <---------------AtSPL8 -------TOE2(3)         --------->ANAC58   --------->ARR14(3)                  --------->ARR11(3)   - ----->YAB1           ---------->DOF2     <------ZmHOX2a(1)<---------YAB1<----------DOF2  <---------ICU4   gatgatacaaaaaacagttttagccaaagccaggagggagttcaggatcttcttcatcatcattatatgcttctcctttgttatcttgtacatcatcact  4269200                                                                                          <----------                                                                                          <----------DOF2                                                                                          -----------                                                                                         <-----------                                                                                         <-----------                                                                                      <---------ANAC58                                      <---------At4g35610                         <---------ANAC58 --ICU4                       <----------DOF2       --------->ZAT14       <---------GLK1(1) ->ZAT6  --------------------->WRI1   --------->At4g35610           <---------ANAC46  <---------ANAC58 -YAB1   <----------DOF2 --------->At4g35610 <---------ANAC58<---------ZAT14      <---------ANAC58 -------->ANAC46         <---------At4g35610 <---------ANAC58--------->ZAT14    --------->ARR11(3)   acatgcctctcctttgttatcttctacagctcctttaatcagctcttgcttctgtttactcgctggactggtgttgaaatcagttcttgcttcttttttt  4269300                                          <---------ARR14(2)                                         <---------CCA1(2)                                      <<<<<<<<<<AtSR1                                      --------->LBD16                                     <---------ANAC58                                     <---------ANAC58                                     <---------ANAC46                                    <---------LBD16                                 ----------------------->TaNAC69(2)                                 --------->KAN4(2)                      <------NtERF2                                <----------TaMYB80                    <---------ANAC58                                --------->HSFB2a(1)                   <---------ANAC58     <---------GLK1(2)          <---------HSFB2a(1)                   <---------ANAC46 -----AGL15                    <-----------ARR10                     <-----------------------TaNAC69(2) ---->AGL15                    --------->ARR14(2)                <-----------RAV1(1) ------AGL3                    <---------ARR14(2)          --------->MYB59 ------AGL2<---------TOE1(2)<---------ANAC46             <--------P--------->ALFIN1     --------->ARR14(2)   ggtgttggaatcttatgttccatttctctagcggatgttccgcgtttctcgcctctcgggttagataatgtggcgtagacggattgaacggtttctctga  4269400  Previous    Next  AGI:  At1g12520.1    Description:  CCS1 (copper chaperone for superoxide dismutase 1); superoxide dismutase copper chaperone. similar to CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT2G28190.1); similar to Cu/Zn-superoxide dismutase copper chaperone precursor [Glycine max] (GB:AAK01931.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424) Range:  from: 4267104    to: 4268924    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g12530.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56420.1); similar to Os03g0228500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049452.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63631.1) Range:  from: 4268984    to: 4270785    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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