Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------AHL20(2)                                             --------->AHL20(2)   <---------TOE1(1)                                       <------ZmHOX2a(1)          <---------ANAC46                                     <---------TOE1(2)       <---------ICU4                                     <---------TOE2(2)       --------->ATHB12   ----------->GT1                 --------->TOE1(2)  ------>NtERF2   --------->At4g35610            <---------ANAC58   <---------DEAR3(1)   <---------At4g35610            <---------ANAC46 <---------RAP2.3(1) -ZmHOX2a(2)               <---------DAG2<---------YAB1<------NtERF2            <---------ATHB12 -->ARR11(3) <----------DOF2      <---------ANAC58<---------DEAR3(1)  <------ZmHOX2a(1) >AGL3       <---------DAG2<----------DOF2--------->ATHB12  <---------YAB1     <---------TOE2(3)   aagagagctaaaacactttctgtttgcaactttttttcgtaggatgatttattcggcgctggatgattacgaggactgactaatgaagaagacatggtcc  4221500                                                             --------->ANAC58                                <-------TEIL                 --------->ANAC58   <----------DOF2                                ---------->DOF2      ----------->GT1  --------->DAG2                    --------->ZAT14        <---------ANAC58 --------->DAG2     <---------ANAC58                --------->ZAT6 --------->CCA1(2)     --------->AtLEC2---------->DOF2   <---------YAB1              <-----------GT1 --------->ARR11(3)--------->ETT(2) --------->ANAC58      --------->ICU4          --------->ATHB12    --------->ARR11(1)<---------ZAT18  --------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)        <----------DOF2   ---------->DOF2  <---------ANAC58---------->DOF2     <---------ANAC58   atcttcttcggtttattgacactacgcttaaagatacagcgacatgcttgtggacatgaaaaaaagcaaggaaaagtgtttgctttgtgatgtttgtaag  4221600                                                                                 <---------------AtSPL8                                                                                 --------------->AtSPL8                       --------->AHL20(2)                                     <---------ICU4             --------->CCA1(2)                                                --------->ATHB12            <---------ARR14(2)                                                --------->ATHB51            --------->ARR11(3)                                               <---------YAB1   -------            --------->ARR14(2)                                             --------->YAB1    <-------            <---------ARR11(3)                                             <--------HAHB4   ---------           <---------HSFB2a(1)                                             <---------ICU4   ---------          ----------->ARR10                                          <---------ANAC58   --------->ANAC58        <------ZmHOX2a(1)    <----------DOF2          <------------MYB.PH3(1)--------->ICU4--------->WOX13(1)     <-----------RAV1(2)  <-----------GT1           <-----------GT1  <---------ANAC58   --------->ANAC46     <---------ANAC46  <---------AHL20(2)           --------->MYB52(1)    <---------YAB1--------->ANAC58   attagtggcaggaagatttgtgtatttatttctttcttagaaacatgttcagattaactgttttttttatgtcttgatcattatttgtacaagcaatcaa  4221700                                                            ----------->GT1                                             --------->YAB1--------->DAG2               ---------->DOF2                            ------->TEIL  --------------->AGL15                    <----------DOF2 --->DOF2             --------->ICU4      =========================================================MADS_MADS --ATHB12        ----------->GT1    <---------ICU4        ---------->DOF2          --------------->AGL15 >ANAC58        --------->ZAT6      --------->ATHB51----------->GT1                <---------------AGL15 >ANAC58--------->MYB52(1)--------->YAB1  <---------------AGL15              <----------DOF2     ----   gctcgtaaactactggttacagtaacaatgaaactgaataatttcaaatataagaagaaaaaaagttaattcatgtgaactttgacttttaaaagtgaga  4221800                                             --------->HSFC1(2)                                             <---------HSFB2a(1)                                             --------->HSFB2a(1)     <------MYB46(1)            ----------->GT1                  <---------HSFC1(2)      <------MYB83            --------->bZIP60(1)         ------>ZmHOX2a(2)           --------->MYB59            <---------bZIP60(1)       --------->ARR14(2)            <---------TOE2(3)            <---------TGA2(1)         <---------ARR14(2)     *TSS --------->ICU4  <----------DOF2              ---------->DOF2               ----------->GT1               ------>ZmHOX2a(1) ----->GLK1(1)         --------->DOF5.7(2)  ------->TEIL  <---------MYB52(1)    ---------->DOF2    <-   aacccttttgagtgatgtaataaacgataacttaaaagatgatccgaaccttctgtttcagttttgtaattaggttatcttataaagctaatccttctct  4221900                                                                                              <------                                                                    --------->ATHB12      <---------ANAC46             --------->YAB1                   --------->TOE2(3)    <---------YAB1         <---------ANAC58             <---------ICU4          <----------DOF2        -------->P<---------WOX13(1)  <---------ANAC58      ----------->HVH21          --------->GLK1(1)       <---------ANAC58          <---------ATHB12 ---------DOF2          <---------YAB1      ------>NtERF2<---------ANAC58     ------>ZmHOX2a(1)   cctttactgtgacaataatcgtcgttatcaaggtgatttctttctctgcctcaaacatcgcttaccctcttgattgattcctccaatcttcttcgtgtgg  4222000                  ------>ZmHOX2a(2)                  ====================================HOX2a_HOX2a                --------->ARR11(3)                <---------ARR11(3)             <--------P             <---------WOX13(1)            <-------GAMYB          <---------AtMYB61                                                         --------->CCA1(2)        --------->ALFIN1                                                           <---------ARR14(2)        <---------ANAC46           ===================HOX2a_HOX2a                  --------->ARR11(1)      --------->ALFIN1             ------>ZmHOX2a(2)                    <---------DOF5.7(2)    ================MYC_MYB ------>MYB83                                ---------->DOF2    ==================MYC_MYB    --------->ARR11(3)                  --------->TOE2(3)    <---------TGA1a         ------>MYB46(1)                          --------->TOE1(3)    --------->TGA1a       <---------MYB59                 <------MYB46(1)          --------->ARR11(3)  <-----------RAV1(2)--------->HSFB2a(2)                  <------MYB83--------->DOF5.7(2) ---AtMYB61<---------MYB46(3)    <---------AGP1------>ZmHOX2a(1)   --------->ICU4<---------TOE2(3)  <   tttcacaggtgtgtggttgatctctagaccaaattgatctggtttcatcctatttctatttggtctgtaatcgttaaagtcttaagatttgggaatcgag  4222100              <---------TOE2(3)              --------->MYB59              <---------TOE1(3)   --------->ANAC55(2)         <---------ANAC46         <---------ANAC55(2)       xxxxxxxxxxxxxxx>smallRNA(le3)    <---------ICU4                           <------ZmHOX2a(1)      <---------AtMYB61          --------->MYB59                               <---------TOE2(3)    <---------ANAC46           <---------MYB52(1)                            ---------->DOF2 <-----------RAV1(1)   --------->ARR14(2)         ----------->GT1      ----------->GT1 ---------TOE2(3)      <---------ARR14(2)     ------->TEIL       ------>ZmHOX2a(1)   tttatgttgtggtgtttaggtagcgaaaccccagttatgtaatcgttgcatctagtaatttggggtccttgaattgaaacaaaggattaatctttcattc  4222200                                                                <---------ANAC58                                                                <---------ANAC58                                                              <---------YAB1                                                             --------->KAN4(2)                                                            --------->KAN4(1)                 <------                                                            <---------KAN4(1)              <---------TOE2(3)                     <---------HSFB2a(1)                  <---------GLK1(2)                <---------TOE1(3)                     --------->HSFB2a(1)            <---------At4g35610              <-----------GT1                   <------ZmHOX2a(1)<----------DOF2 --------->At4g35610     <-----------GT1<---------YAB1   atctatgttctgagttatcgaggatgttcttgggtcatcttttgatgaaaattgagctcagattattcgtgttttgtattacaggttttacttatggtta  4222300                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                          <---------ARR11(3)            <---------HSFB2a(1)             <---------YAB1--------->GLK1(2)            --------->ALFIN1              <-----------GT1 <---------ARR11(1)            <---------ZAT6             <---------MYB46(3) --------->ARR11(3)     ---------->DOF2                  <---------MYB52(1) <---------ARR14(1)    --------->YAB1<---------CCA1(2)  <-------GAMYB       <---------CCA1(2)                   <-------   <---------ATHB12               <---------At5g28300--------->ANAC58               --------->YAB1--- --------->WOX13(1)              <-----------GT1     --------->ANAC58               --------->ATHB12 ---------------WRI1   --------------->AtSPL8      ------>ZmHOX2a(1)           <---------ATHB12  <---   atgcaatcaaaggagtgttcgtctcttggtacttcttaccgttgttacgattcctaagcaaatcttgatgaacacaattgaatcattcattgtttctttg  4222400  Previous    Next  AGI:  At1g12390.1    Description:  cornichon family protein. similar to cornichon family protein [Arabidopsis thaliana] (TAIR:AT1G62880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16964.1); contains InterPro domain Cornichon; (InterPro:IPR003377) Range:  from: 4220098    to: 4221772    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g12400.1    Description:  DNA binding. similar to DNA binding [Arabidopsis thaliana] (TAIR:AT1G62886.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16963.1); contains InterPro domain Nucleotide excision repair, TFIIH, subunit TTDA; (InterPro:IPR009400) Range:  from: 4221861    to: 4222835    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version