Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <---------YAB1                      -------->P                                        ------>ZmHOX2a(1)                   --------->At4g35610                            <---------DAG2          <---------AHL20(2)                   <---------At4g35610             ----------->GT1<----------DOF2        --------->AHL20(2)                 --------->REM1(1)                <-----------------------TaNAC69(2)     <---------AHL20(2)                <-------TEIL                 ---------->DOF2--------->TOE2(3)  <---------WOX13(1) ->GT1       --------->At4g35610    ------>ZmHOX2a(1)       --------->TOE1(3)--------->ATHB12   ttcaatgtctaaattagcttcatctaccatttcaattcctcatataacaaagagcgtaaaaaccctaacttttcctctatgattgctctaatttaaaatg  4208500                                                                                --------->ANAC58                                                                                --------->ANAC46           <------ZmHOX2a(2)                                                    --------->ANAC58    <---------ANAC58                                                         ----------->HVH21    <---------ANAC58                                                         ----------->TGA1    <---------ANAC46                                                       --------->ZAT2  <---------ANAC46                                                         <---------ZAT2  <---------ANAC58                                                         --------->At4g35610  <------MYB83                             --------->ANAC46            <---------REM1(1)  <------MYB46(1)                          --------->ANAC58          <---------MYB46(3)  <---------ANAC58                         --------->ANAC58       <------MYB46(1) <---------AtMYB61                       --------->MYB52(1)       <------MYB83<---------TGA2(2)------ <---------MYB46(3)         --------------->AGL15                <---------AtMYB61           >>>>>>>> --------->MYB111(1)       --------->At4g35610                   --------->MYB111(1)     <----------DOF2 --------->MYB46(2)        ----------->RAV1(2)            --------->GLK1(2)<---------At4g35610-------   ggtttggtgtgagatcgagctatggactcacctgtaagagaaaaaacggaatttggagagaatcgatttggtggtgaagctgacgcaaaccctttaacat  4208600                                                                     <------MYB46(1)                                                                     <---------DEAR3(2)                                                                     <------MYB83                                                                    <---------AtMYB61                                                                  <-------GAMYB                                                                 <------NtERF2                                                                ------>NtERF2                                                            <---------DEAR3(1)                                                            --------->ATERF1(2)                                                            --------->DEAR3(1)                                                            <---------ATERF1(2)                                                           --------->DEAR3(2)                                                           --------->ATERF1(1)              <--------                                                           <------NtERF2                    <--------                                                          <---------ATERF1(1)               <--------                                                          --------->MYB52(1)          <---------WRKY12      <---------WOX13(1)--------->HSFB2a(2)               ------>NtERF2             --------->AGP1  <    <---------ICU4      <---------HSFB2a(2)              <---------ALFIN1           <---------ARR11(3) --------->TOE2(3)  <---------ANAC46                  ------>NtERF2<---------MYB52(1)<------ZmHOX2a(2) --------->TOE1(3)  <---------ANAC58                  <---------ATERF1(1)   <---------MYB52(1)<------NtERF2 --->TOE2(3)        <---------ANAC58               --------->MYB52(1)<---------MYB46(3)--------->MYB52(1) >MYB98        <---------DAG2              <---------WOX13(1)  <---------ANAC46    --------->At4g35610 -->YAB1       <----------DOF2     ------>ZmHOX2a(2)--------->RAP2.6(3)   <---------YAB1  ------->GAMYB   aaaccctaattgcctcgcttttgcgtccagaaattgatcgaacagattgaaaacgacggccaccggcgcgttggttctgtttgccagatcaacggcgtgg  4208700                                                             <---------MYB52(1)                                                         ------>MYB46(1)                                                         ------>MYB83                                                        <---------ALFIN1                            -                                                       --------->MYB46(3)                         ---                                                       <---------MYB55(2)                         <--                                                       <---------ABI4(2)                         <---                                                      --------->TCP15(2)                        <----                                                      --------->DEAR3(2)                        -----                            ------>ZmHOX2a(2)        --------->PCF2                             -----                          --------->ARR11(3)         <---------TCP20               ------->TEIL<-----   ------->GAMYB        --------->WRKY12             <---------TCP15(1) <---------MYB46(3)     ====== -ANAC58               <---------MYB52(1)           <---------PCF2 ------>ZmHOX2a(2)           ====== -ANAC58    <---------YAB1<---------ARR11(3)       ----------->HVH21 --------->MYB52(1)   <----------DOF2 -ANAC46 <---------MYB52(1)<---------GLK1(1)    <---------LBD16    --------->MYB46(3) <----------DOF2 -----------GT1     --------->MYB46(3)      <---------DOF5.7(2)    ==================================   attaacgcccagttatctttcaaccgttgatctctgaacatccagtaaacgacgggacccaccgtttgatccaacggttgccatgagcctttctttagga  4208800                                                                                                <----                                                                                               ------                                                                                               <-----           --------->LBD16                                                                     <-----         <---------LBD16                                                                      <------     ----------->HVH21                                                                        <------     <---------ETT(1)                                                                        <-------    --------->DEAR3(2)                                                                       <-------    ------>ZmHOX2a(2)                                                                       ---------   <------ZmHOX2a(2)                                                                      -----------  <---------ARR14(2)                                                                 <---------MYB52(1)  --------->ARR14(2)                                                                 <---------ARR14(2)  <-----------ARR10                                                                  --------->ARR14(2) -------->LBD16                                                                     <-------GAMYB --->ZmHOX2a(2)                                                                    <---------DEAR3(2) -------LBD16                                                                      --------->LBD16 ---ZmHOX2a(2)                                                                    <---------ANAC46<-- -----ARR14(2)                  ------>NtERF2               <-----------GT1       <---------DEAR3(1) ---->ARR14(2)                 --------->ANAC58         --------->ARR14(2)       <---------LBD16<---- ---->ARR11(3)                 --------->ANAC46         <---------GLK1(2)        <------NtERF2------>NtERF2 -ZmHOX2a(1)<-------GAMYB      --------->ANAC58         <---------ARR14(2)      <---------RAP2.3(1)-- ==========HOX2a_HOX2a       <---------ATERF1(1)   --------->CCA1(2)           <---------DEAR3(1) --- =========HOX2a_HOX2a       <---------ETT(2)   <------ZmHOX2a(1)              --------->ZAT18-------- =HOX2a_HOX2a               --------->ETT(2)<------ZmHOX2a(1)<-----------GT1 --------->ALFIN1<-------   tccggatccgacccggttgaactgagactgtcgacgccattacgaaggaggagagacggatttttccgatttcactaatgtgcgccggttatgcgacggc  4208900    <------ZmHOX2a(1)   ----------->GT1 <------ZmHOX2a(1) -----ANAC46 --->ATERF1(1) ----LBD16 -NtERF2 ---RAP2.3(1) ---ATERF1(1) --O2                                  --------->ZAT18 --RAP2.3(2)                           <---------ZAT18                   --------->YAB1 >ATERF1(1)                    ----------->RAV1(1)                       <--------ATHB1 >HVH21                       ----------->HVH21                         <---------ATHB51 ----NtERF2                 --------->ANAC58                            <---------ATHB12 -----DEAR3(1) ============================RAV                      ------------>CBF ------->ALFIN1<-----------RAV1(2)---------->DOF2                  ----------->GT1 ------>ATERF1(1)           --------->ANAC46                       --------->ANAC58                 < ->O2        <---------ANAC46 <----------ID1                       --------->ANAC58            <----- --DEAR3(1) <---------LBD16 --------->ANAC58     *TSS        <---------ANAC46               <--------   ggaggaggataatttgcgcaggggatgctcaagcgacaaagcgcgcgatgtcttcgaaaaatggagggaaggcaataatacactgtttgagtttgtggtt  4209000                                    <-----------HVH21                                  <-------MYC2                                  -------->ABF1                                  ------->MYC4                                  ------->MYC2                                  <-------MYC3                                  <-------MYC4                                 <---------TGA1a   <---------ANAC58                                 <---------ANAC55(2)        <---------ANAC58                                 --------->ANAC55(2)      <-----------GT1                <------MYB46(1)  <---------O2      <---------ANAC58      ------>ZmHOX2a(2)          --------->O2<---------YAB1 <---------ANAC58  <----------DOF2 ------------CBF<------MYB83     --------->TGA1a<---------WOX13(1)        <---------ARR14(2) ----ANAC46     <---------MYB46(3)------->MYC3--------->ATHB12            --------->ARR14(2)     ---- -TOE2(3)<---------ANAC46      <---------ALFIN1<------------CBF <---------CCA1(2)        <---------MYB52(1)   tgaattgatctacgtggatggtttacattatcaacacgtgtcagactgtgattgcttaattttcttgtctctcgcgaattctttcttagcagttagcata  4209100                                                                                         ------------                                                                                         <-----------                                                                                        <------------                                                                                     <----------DOF2                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  ----------->GT1<xxxxxxxxxxxxxxxxxxx                                                          --------->HSFB2a(2)   <xxxxxxxxxxxxxxxxxxxx                                                          <---------HSFB2a(2)  --------->TOE1(3)          <---------WOX13(1)                              ----------->GT1<---------AHL20(2)        --------->ATHB12                                 <---------LBD16--------->AHL20(2)      -----       <---------YAB1      --------->TOE2(3)        --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----->AHL20(2)    ---------->DOF2         <---------ANAC46--------->LBD16    ----------->RAV1(2)   ttaatacatttgattgaagtttaaagaaaacttaatatttgtgtaatgtgtatagatgttcgggaaaaatgttatttaatacctgaactttcaaaaaatg  4209200                                                                                                    <                                                                                                  xxx                                                                                                <xxxx                                                                                                <xxxx                                                                                               <xxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                       ------>NtERF2<                                                                                     <xxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)         --------->At5g28300                                                   xxxxxxxxxxxxxxxx>smallRNA(i)         --------->LBD16                                                    <---------YAB1xxxxxxxxxxx        ------->GAMYB                                                       <---------TOE2(3)<xxxxxxx      <---------At5g28300                                                  xxxxxxxxxxxxxxxx>smallRNA(s)     <-----------GT1                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->MYB52(1)                                                  <---------AHL20(2)<xxxxxxxxx   <xxxxxxxxxxxxxxxxsmallRNA(i)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxsmallRNA(s)                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->AGL15                                                            --------->AHL20(2) xxxxxxxxxxxx ----AGL15                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----AGL1<---------MYB52(1)               <---------AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxsmallRNA(le3)           <---------MYB52(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxx xxxsmallRNA(le3)      ----------->HVH21  <---------ATHB12     <-----------GT1 <---------MYB52(1) --- ------>GT1 xxxxxxxxxxxxxxxx>smallRNA(i)  --------->AHL20(2)  <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   gtcaaattaaccgtgaatttttgaaatgaccgttttatacttcaataaatagttgatttctaatttaacctataaattatcgttgattcggccaaatcga  4209300            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxx>smallRNA(i)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->ZAT6      <---------DOF5.7(2)    <---------MYB52(1)    --------->DOF5.7(2)   <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxsmallRNA(i) xxxxxxxxxxsmallRNA(s) xxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxsmallRNA(s) xxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(le3) xxxxxxsmallRNA(i) xxxxxxxxxxx>smallRNA(fl3)                                         ------->GAMYB xxxxxxsmallRNA(s)                                                --------->MYB46(3) xxxxxxxxxxxx>smallRNA(le3)           <---------MYB46(2)         ------>MYB46(1) xxxxxsmallRNA(i)                     <------------MYB.PH3(2)    ------>MYB83 <---------MYB52(1) xxxxxxxxxxx>smallRNA(fl3)            <---------MYB111(1)       --------->MYB52(1) xxxxxsmallRNA(s)                     <---------MYB52(2)       --------->TOE2(2) xxxxxxxxxxx>smallRNA(si3)       ----------->GT1               --------->TOE1(2) xxxxxxxxxxx>smallRNA(le3)   ---------->DOF2                  --------->MYB46(3)--------->MYB59 ---------At5g28300  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(s)          >>>>>>>>>>MYB80 <-----------HVH21 xxxxxxxxxxx>smallRNA(se3)  --------->MYB52(1)          --------->TOE2(3)    <-------GAMYB xxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)------>ZmHOX2a(1)  <----------DOF2 xxxxxxxsmallRNA(i) <---------At4g35610               ---------->ID1    --------->MYB46(3)   <xxxxxxx xxxxxxxxxx>smallRNA(le3)  ------>ZmHOX2a(1)        <---------ANAC58  --------->MYB52(1)  <xxxxxxxxxx xxxsmallRNA(le3)   --------->At4g35610 --------->MYB52(1) ---------->DOF2  <---------MYB46(3)      < -------->HVH21<xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)    <   ctcaccgttaacacttcttaacagctctcctaacagcgtaactaacaattgttttcgtccttaaaccaacgacaacggctgttaggccatgttttgtaat  4209400  Previous    Next  AGI:  At1g12370.1    Description:  PHR1 (PHOTOLYASE 1). similar to CPD photolyase [Cucumis sativus] (GB:BAB39480.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79335.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16970.1); contains InterPro domain DNA photolyase, FAD-binding; (InterPro:IPR008149); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050); contains InterPro domain DNA photolyase, FAD-binding/Cryptochrome, C-terminal; (InterPro:IPR005101); contains InterPro domain DNA photolyase, class 2; (InterPro:IPR008148); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729) Range:  from: 4206413    to: 4208949    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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