Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->ATHB12                         <---------ICU4                         -------->ATHB1                         --------->ATHB51                        <---------ATHB51                                                         <---          <---------RVE1(1)         <---------------AGL15                                       -----          <---------CCA1(1)         --------->TOE2(3)                                     <------ZmHOX2a(1)         --------->AHL20(1)         --------->TOE1(3)                                   <---------TOE2(2)         --------->ARR11(3)        ----------------->AGL3                               <---------TOE1(2)         <---------AHL20(1)   <---------ANAC58        ----------->GT1                 --------->TOE1(2)         <---------ARR11(3)   <---------ANAC58        <---------At4g35610            <---------ANAC58     ---------->DOF2    --------->ICU4        <------ZmHOX2a(2)                      <---------ANAC46 ---------->GT1         <---------YAB1       --------->ARR11(3) <----------DOF2      <---------ANAC58 -->HSFB2a(2)     --------->ARR14(2)--------------->AGL15       <---------DAG2<----------DOF2-------- ---HSFB2a(2)     <---------ARR14(2)--------->YAB1    --------->At4g35610     <---------DAG2<--------   taacgagaaaagatatttcgaatcccattattgcttaaccataagtagatcaagagagctaaaacactttctgtctgcaactttttttcgtaggatgatt  4198000            --------->ATHB12            <---------ICU4     ------>NtERF2    <---------DEAR3(1)                                                             ---------->DOF2  <---------RAP2.3(1)                                                              <-------TEIL <---------DEAR3(1)            <---------ATHB12                        --------->ZAT14           ---- ------AHL20(2)  <---------ANAC46                                  --------->ZAT6 --------->CCA1(2) ---->AHL20(2)   <---------TOE1(1)                               <-----------GT1 --------->ARR11(1) ->ATHB12  <---------YAB1     <---------TOE2(3)              --------->ATHB12    --------->ARR11(3) -YAB1<------NtERF2  <------ZmHOX2a(1)                     <----------DOF2   ---------->DOF2     <---   tattcggcgctggatgattacgaggactgactaatgaagaagacatggtccatcttcttcggtttattgacactacgcttaaagatacagcgacatgctc  4198100                                                                          --------->AHL20(2)                                                                --------->CCA1(2)                                                               --------->ARR14(2)                --------->ANAC58                               --------->ARR11(3)                --------->ANAC58                               <---------ARR14(2)            --------->ANAC58    xxxxxxxxxxxxxxxx>smallRNA(i)   <---------ARR11(3)            --------->ANAC58   <----------DOF2                <---------HSFB2a(1)    ----------->GT1  --------->DAG2   --------->ICU4         ----------->ARR10--------->AHL20(2)    --------->AtLEC2---------->DOF2   <---------YAB1       <------ZmHOX2a(1)  <---------AHL20(2) --->PIF5  --------->DAG2     <---------ANAC58          <---------ANAC46  <---------AHL20(2) ----PIF5 ---------->DOF2     <---------ANAC58          <-----------RAV1(2)  <---------AHL20(2)   gtggacatgaaaaaaagcaaggaaaagtgtttgctttgtgatgtttgtaagattagtggcaggaagatttgtgtatttatttatttcttagaaacatgtt  4198200                                       --------------->AtSPL8                                       <---------------AtSPL8                                    <---------ICU4                                    --------->ATHB12                                    --------->ATHB51                                   <---------YAB1   ---------->DOF2                                   --------->ICU4  <---------ATHB12                                 <                                 --------->YAB1   --------->ANAC58                            -------                                 <--------HAHB4   --------->ANAC58                    ------->TEIL  =                 <-----------GT1 <---------ICU4  --------->WOX13(1)             --------->ICU4<------     <------------MYB.PH3(1)    <---------YAB1--------->ANAC58             ----------->GT1    -------   --------->MYB52(1)      <---------ANAC58   --------->ANAC46            --------->ZAT6      <------   <-----------GT1         <---------ANAC58   --------->ANAC58    --------->MYB52(1)--------->YAB1  -   cagattaactgttttttttttatcttatgtcttgatcattatttgtacaagcaatcaagctcgtaaactactggttacagtaacaatgaaactgaatatt  4198300          ----------->GT1                                             ----------->GT1   --------->YAB1                                           <----------DOF2 ---------------AGL15                                  --------->GLK1(1) -->ARR11(3)                                           <---------GLK1(1) =========================================================================MADS_MADS ---ARR11(3)      ----------->GT1              --------->DAG2         --------->bZIP60(1)      ------ -->AHL20(1)     --------->DAG2               ---------->DOF2         <---------bZIP60(1)     <------ ---AHL20(1)    ---------->DOF2          <----------DOF2  <---------------AGL15    <---------ARR11(3) -------------->AGL15              <----------DOF2--------->ALFIN1    <---------TGA2(1)  ---------->DOF2   ttcaaatataagaagaaaaaaagttaattcatgtgaactttgacttttaaaagtgggaaaccctttagagtgatgtaataaacgagaacttaaaagatga  4198400                           <------MYB83                   <------MYB46(1)                   <------MYB83                   ----------->GT1   --------->HSFC1(2)      <------MYB46(1)   <---------HSFC1(2)     <---------TOE2(3)   --------->HSFB2a(1)    --------->MYB59   <---------HSFB2a(1)  --------->ICU4  ------->TEIL    --------->MYB59                                                       <----------DOF2 --->ATHB12       --------->MYB46(2)             ------>ZmHOX2a(1) --------->YAB1   --------->GLK1(1) ---YAB1   *TSS <---------MYB52(1)    ---------->DOF2 ----------->HVH21    <---------YAB1        <---   ttcgaaccttctgtttcagtttggtaattaggttatcttataaagctaatccttctctcacactgacaatcgtcgttatcaaggtgatttctttctctgc  4198500                                                                     ------>ZmHOX2a(2)                                                                     ================================                                                                   --------->ARR11(3)                                                                   <---------ARR11(3)                                                                <---------WOX13(1)                                                                <--------P                                                               <-------GAMYB                                                             <---------AtMYB61                                                       ================MYC_MYB                                                       ==================MYC_MYB                                                       <---------TGA1a                                             <---------AtMYB61<---------MYB46(3)                   --------->ATHB12      <---------ANAC46  <---------ANAC46             <---------MYB46(3)           -------->P<---------WOX13(1)  <---------ANAC58  --------->ALFIN1            --------->ALFIN1        <---------ANAC58                 <---------ANAC58--------->ALFIN1    <---------MYB59        <---------ANAC58     ------>ZmHOX2a(1)         --------->TGA1a      --------->ANAC46 --------HVH21    <---------YAB1  <---------ATHB12   <-----------RAV1(2)--------->HSFB2a(2)       ---   gtcaaacatcgcttaccctcttgattgattcctccaatcttcttcgtgtggtttcacaggtgtgtggttgatctctagacccaattgatgtggttccatc  4198600                                                                 <---------TOE1(3)                                   --------->CCA1(2)             --------->MYB59         <------MYB83             <---------ARR14(2)             <---------TOE2(3)         <------MYB46(1)          --------->ARR11(1)        <---------ANAC46    <---------AHL20(2)          <---------TOE2(3)         xxxxxxxxxxxxxxx>smallRNA(le3)   <---------YAB1               <---------TOE1(3)        <---------AtMYB61             <---------AHL20(2)  <---------AHL20(2)        <----------DOF2            <---------ANAC46               --------->AHL20(2) ====HOX2a_HOX2a      ---------->DOF2              <---------TOE2(3)      --------->ARR14(2) --->ZmHOX2a(1)    --------->YAB1 --------->ARR11(3)<-----------RAV1(1)   <---------ARR14(2)     ----   ctatttttatttggtctgtaatcgtaaagtctttaagatttgggaatcgagtttatgttgtggtgtttaggtagcgaaaccccagttattaaatcgttgc  4198700                              <---------TOE2(3)                            ---------->DOF2                     <---------WOX13(1)                                <---------ARR14(2)                  <---------AHL20(2)                                   --------->ARR14(2)                  --------->AHL20(2)                     <---------MYB46(3)   --------->HSFB2a(1) ----------->GT1------>ZmHOX2a(1)              --------->YAB1         --------->GLK1(1)   --------->DAG2 --->TEIL       <----------DOF2 <------ZmHOX2a(1)  <----------DOF2    <---------GLK1(1)  ---------->DOF2   atctagtaatttggggtcctttaattgaaacaaaggattaatctttcattcatctttgttcgttcattagcgaaatccgagccttctctgaaaaagccca  4198800                                       <---------GLK1(2)                                    <---------WOX13(1)                                 ----------->HVH21                                  <------MYB83                                --------->LBD16                                     <------MYB46(1)                               <---------ANAC58                                    <---------MYB46(3)                               <---------ANAC58                                    --------->ALFIN1                               --------->ANAC55(2)                                 <---------AtMYB61                               <---------ANAC46                                   <---------WOX13(1)             <---------ANAC58  <---------ANAC55(2)                           <---------LBD16             <---------ANAC58  <---------ANAC55(1)       =========================HOX2a_HOX2a             <---------ANAC46 <---------LBD16            <------ZmHOX2a(1) ------>ZmHOX2a(2)    --------------->AtSPL8   <---------At5g28300     ---------->DOF2      <---------GLK1(1)--------->At4g35610   tttttgttcgttcttccttgtttcttcgattttccgtgactgattctgttttgcgaaaaggattgaaatgagttcgatctctggattggtggaagatgaa  4198900  Previous    Next  AGI:  At1g12340.1    Description:  similar to cornichon family protein [Arabidopsis thaliana] (TAIR:AT1G12390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16964.1); contains InterPro domain Cornichon; (InterPro:IPR003377) Range:  from: 4197394    to: 4198308    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g12350.1    Description:  ATCOAB (4-PHOSPHO-PANTO-THENOYLCYSTEINE SYNTHETASE); catalytic/ phosphopantothenate--cysteine ligase. similar to DNA/panthothenate metabolism flavoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G02080.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76608.1); contains InterPro domain DNA/pantothenate metabolism flavoprotein, C-terminal (InterPro:IPR007085) Range:  from: 4198411    to: 4200800    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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