Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     ----------->RAV1(1)                                 <-----------HVH21                                 --------->LBD16                                 ------>NtERF2                                --------->ANAC58                                --------->ANAC58                                --------->ANAC46            ------>ZmHOX2a(1)               <------NtERF2                               ------>ZmHOX2a(2)           --------------->AGL15         --------->ATERF1(1)                               ====================================HOX2a_HOX2a          <---------At4g35610                              --------->ARR14(1)           <---------ANAC58             --------->At4g35610                              =====================================HOX2a_HOX2a          <---------ZAT2                              --------->CCA1(2)            <---------------AGL15        --------->ZAT2                              <------ZmHOX2a(2)            <---------ANAC58            <---------ARR14(2)                             --------->ARR14(2)            --------->TOE2(3)        --------->ANAC55(2)                             <---------GLK1(2)            ----------------->AGL1    --------->ANAC58                             --------->AGP1              ------>MYB83               <---------ANAC55(2)                   <---------KAN4(1)                   <---------MYB59              --------->ANAC46                   <----------TaMYB80                 <---------HSFB2a(1)           --------->ANAC58                   --------->KAN4(1)                  <---------HSFC1(2)           <---------LBD16                  --------->ARR14(2)                  --------->HSFC1(2)         ----------->HVH21                  <---------KAN4(2)<---------ALFIN1<---------MYB52(1)           <-----------HVH21      <---------ARR14(2)     <---------ARR14(2)   --------->LBD16               <-----------TGA1      --------->ARR14(2)    --------->At4g35610  --------->ANAC46              <---------ANAC58    --------->ANAC46--------->KAN4(2)         ------->TEIL----------------->AG --------->ANAC46   ----------------->AGL1   <---------At4g35610 <---------LBD16        <----------DOF2 --------->ARR14(2)   <-----------------AGL1  ----------->ARR10------->GAMYB------>MYB46(1)       <---------ANAC55(2) -----GLK1(2)     <---------ARR14(2)       <---------MYB52(2)          ----------------------->TaNAC69(2) ----ZAT2         ---------->TaMYB80       --------->MYB46(3)      <---------ZAT18--------->MYB52(1) ----At4g35610   <---------GLK1(2) --------->DEAR3(1) --------->HSFB2a(1)      <---------ANAC58 <----   ttctctccgatactggtcagaatatgcctcagatccgccacagcaacgaacccggtaccttccttatcgagcactttgaatgcgtcacggagctggcgat  4187700                  --------->HSFC1(2)       <---------ANAC58       <---------ANAC55(2)                                                                   --------       <---------ANAC46                                                                      <-------       <---------ANAC58                                                          --------->ICU4    <-       <---------ANAC55(1)                                                 --------->ARR14(2)--------       --------->ANAC55(2)                                          --------->GLK1(2)        --------    --------->ARR14(2)                                             --------->ARR14(2)      <---------    <---------ARR14(2)                                             <---------GLK1(2)    --------->GLK1(1)  --------->HSFB2a(1)                                            ----------->ARR10  <---------TOE2(3)  <---------HSFB2a(1)           <------ZmHOX2a(2)    --------->MYB52(1)    <---------ARR14(2)<------- --------->DAG2   <---------HSFC1(2)   --------->GLK1(2) --------->At5g28300     <---------ATHB51  <- --ZmHOX2a(2)  <---------At4g35610   <------ZmHOX2a(1)  ----------->GT1<---------LBD16  <---------GLK1(1)   cgaaaggttccgtcttcagatgtttcgccatgagatcgaggaatctgttgaaatcaaacggtgaagagagattctcggatgcgattatggatttcagctg  4187800                                                 <---------DEAR3(2)                                                <---------DEAR3(1)                                             ----------->TGA1                                         --------->ZAT2                         ===============HOX2a_HOX2a                         ------>ZmHOX2a(2)   ----------->HVH21                        ================HOX2a_HOX2a                  ------>NtERF2       --------->LBD16           --------->ARR14(2)       ------>ZmHOX2a(2)              <------NtERF2      <---------ANAC46  <------ZmHOX2a(2)<---------ZAT2           ------>NtERF2 --->RAV1(2)     --------->DEAR3(1)<------ZmHOX2a(2)             --------->DEAR3(1) --At4g35610   <---------At4g35610<---------ARR14(2)             <---------ETT(2) --------ANAC58------>NtERF2      --------->ARR14(2)            <------NtERF2<---------ANAC46 ->At4g35610 <---------LBD16      <---------ARR11(3)            --------->ATERF1(1) ->ZAT2    <---------ARR14(2)     <---------ARR14(3)           <---------ATERF1(1) --RAV1(2)<---------GLK1(1)       --------->ARR11(3)           ------>NtERF2<------NtERF2 --ZAT2   --------->GLK1(1)       --------->ARR14(3)          <---------ATERF1(2)               ----- --------ANAC58--------->LBD16   <------ZmHOX2a(1)            --------->DEAR3(1)        --------->RAP2.6(3)   ggcttgggtcgggtttccgccgagagatcgcatgaggatcccgagctctgacggtgcgattttgccgtcgccatcggtgtcgaagagcatgaaggcttcc  4187900                                                                                 --------->At4g35610                                                                                 <---------At4g35610                                                                               <-----------RAV1(2)                                                                             <-----------HVH21                                                                           --------->LBD16                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                         <---------LBD16                                                                       --------->GLK1(2)                                                       --------->LBD16 --------->ARR14(2)                                                      <---------ANAC58 <---------ARR14(2)                                                      <---------ANAC46<---------ARR14(2)                                                      <---------ANAC58<---------GLK1(2)                                                     <---------LBD16  --------->ARR14(2)                                                 --------->HSFC1(2)  --------->At4g35610            ----------->HVH21                    --------->HSFB2a(1) <---------At4g35610          <--     --------->ANAC46           <----------DOF2<---------GLK1(2) <-----------HVH21                <-- ---->TOE2(3)   ------>ZmHOX2a(2)          <-----------GT1      <---------At4g35610          <-------   ttcatcgacgagacctgatcgtcgctcagaccatctttccccatttttcgattcttccgggttttcaggtcagattccgggtcagatgtttctctctttt  4188000                                                                           <------NtERF2                                     <---------ANAC58                    --------->bZIP60(1)                                     <---------ANAC46                    <---------ANAC58        --------->ZAT14   <------ZmHOX2a(2)                              <---------bZIP60(1) -------ANAC58        <---------TOE2(3)            <-----------GT1       <---------ANAC46 -------ANAC58 ------->GAMYB         <---------ANAC58 *TSS               <---------ANAC58 ---DOF2<---------ZAT14 <------ZmHOX2a(1)      <----------DOF2--------->ALFIN1   gcttcttctctgtacaacgaaatttaggatcagagagtcgcgtttgtaacttttaacgagagaggtgttgatatggcgtcgttttatctaatattcaagg  4188100                                                                                        ------>ZmHOX2a(2)                                                                                       <------ZmHOX2a(2)                                                                                      --------->ARR11(3)                                                                                      <---------ARR14(2)                                                                                      <-----------ARR10                                                                   <---------ZAT6     <---------ARR11(3)                                                           --------->YAB1             --------->ARR14(2)                                                          <---------ATHB12           <------ZmHOX2a(1)                                   ---------->DOF2       ------>MYB83              <---------TOE2(3)                               --------->TOE1(3)         ------>MYB46(1)     <---------TOE1(3)                               --------->TOE2(3)        --------->WOX13(1)   <---------TOE2(3)                             <---------ARR11(3)       --------->MYB46(3)    ---------->DOF2 <--------  <-----------------AGL2     --------->ARR11(3)       ------------>CBF     <---------AHL20(2)   cccaactatttctggcccatttatctcttgaaatcttaaaagatgaacaaagtctaaccaatcatattagtggaaatttaaagtttaggatcttattttt  4188200                                                                                        <------MYB46(1)                                                                                        <------MYB83                                                                                    <---------ANAC46                                                                                    <---------ANAC58         <----------DOF2                               ---------->DOF2     <------ZmHOX2a(1)      --------->ARR11(3)                         --------->AHL20(2)        --------->YAB1         ---    ------->TEIL   ---------->DOF2        <-----------GT1     --------->AHL20(2)    <---------ANAC58 -YAB1<---------ARR11(3)       <---------YAB1    <---------AHL20(2)       ----------->GT1         <--   gaaatgaatgtctttcgcctataaagttttgatatgtttgctagttacaaattaaaaaaaagaatcaaatattagtaggataatttgagtgggtttgcat  4188300                                  -------->HAHB4      <---------ICU4                                  <---------ICU4      --------->ATHB12                                  --------->ATHB12    --------->YAB1      ----------->GT1        ----                                 --------->ICU4      --------->ICU4 --------->DAG2               ----                                 <---------YAB1      <---------ATHB12  --------->ALFIN1  --------->YAB1                          <---------ANAC58    <----------ID1       ---------->DOF2  <---------KAN4(2) ------>AHL20(2)          <---------ANAC58 --------->ZAT14 <---------YAB1----------->GT1 <---------ICU4 -------AHL20(2)          <---------ANAC46 <---------ZAT14 <---------TOE2(3)   ---------->DOF2 <-----   tttaatatttgtattggcaaatgaaattgcttaaaatgattccactatacaacaaatcattaagtttgagaaagtgggataaaaagaataaacatgacct  4188400                                                                             --------->ATHB51                                                                             --------->ATHB12                 --------->MYB46(3)                                         <---------YAB1    <------              --------->MYB46(3)                                        ----------->RAV1(1)----------         --------->ANAC46                                <---------TOE2(3)--------->ANAC46 <---------ANAC58         --------->ANAC58                           <---------YAB1   --------->PCF2        <---------ANAC46     <----------DOF2                              --------->YAB1     ---------->ID1  ------>ZmHOX2a(2) -->MYB46(1)  <---------ALFIN1                <------ZmHOX2a(1)   --------------->AtSPL8   <---------ANAC58 -->MYB83--------->ANAC58             ----------->HVH21---------->DOF2  <---------ALFIN1  <---------- ----MYB59  --------->RAP2.6(2)   ---------->DOF2--------->ICU4--------->ATHB12    <---------AGP1   aatatttctttaagccacaaccgatagagtcgttttcaaagtgacataggaattataaaaaggtttgatttgtcccacataattggatctatggggtaca  4188500                                                                             <---------ALFIN1                                                              <---------AHL20(2)                                                       <---------ANAC55(2) ------>MYB83                                                       --------->ANAC55(2) ------>MYB46(1)                                                     <---------ICU4     --------->HSFB2a(1)                                                  --------->YAB1---------->DOF2 -TEIL   --------->AHL20(2)       ------->TEIL <---------bZIP60(1)      <---------HSFB2a(1) ->GT1   <---------AHL20(2)     <<<<<<<<<EIN3  --------->bZIP60(1)--------->DAG2 -----AtSPL8  <-------TEIL <---------YAB1    --------->YAB1 <---------------AGL15            <-------   aagacaattgtttaaatgcattggtcactatcaatgtatatagcaaatgatatcatcatgtgatttaaaaggtaaccttccacttggatgatttttcaca  4188600  Previous    Next  AGI:  At1g12310.1    Description:  calmodulin, putative. similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G62820.1); similar to unknown [Populus trichocarpa] (GB:ABK92941.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 4187163    to: 4188054    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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