Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <---------YAB1                                                                                    <---------ICU4                                                                                    --------->YAB1                           ------>ZmHOX2a(2)                                       <---------ATHB12                         <-----------ARR10                                       --------->WOX13(1)                         --------->ARR11(3)       --------->MYB52(1)            <---------AHL20(2)            --------->ANAC58                 --------->ANAC58                   --------->AHL20(2)            --------->ANAC58                 --------->ANAC58                  <---------ATHB12    <-            --------->ANAC46    <---------------AGL15                     --------->ANAC58         --   --------->MYB59       <---------ARR11(3)  <----------ID1             ---------->DOF2--------->YAB1 --------ZAT6           --------->YAB1      --------->DAG2   --------->ANAC46--------->WOX13(1)    -- --YAB1<-------TEIL   <---------TOE2(3)    ---------->DOF2 <-----------GT1--------->ANAC58        ---   agtgttaggctcatacccaagtttaatgatcttccccatagcagaaaaagccaaacagagtttacgacatcgacaaaagcaattaatcataatactcaga  4185700            --------->LBD16           --------->ANAC46          <---------LBD16      <---------ARR14(2)                                            <---------ANAC46      --------->ARR14(2)                          --------->ZAT6    <---------ANAC58   <---------TOE2(3)               <---------ANAC58      <------ZmHOX2a(2) --------ZAT14                     <---------ANAC58     <---------ARR11(3)          --------->ANAC58 ------->REM1(2)                   <---------ANAC46     --------->ARR11(3)       --------->ZAT18 ------->ZAT14         --------->AHL20(2)    <---------At4g35610    <---------ANAC58--------->ANAC58 ------>ALFIN1       <----------DOF2         --------->At4g35610  <-----------------AGL1            -   gtgtagaggttatgcgcgattccctttaattccatttgcttgcagagagctaacacaagatcatactgtttcgttttggcaatggcactaaacaatctac  4185800                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                           <----------ID1                                                              ----------->RAV1(2)     --------->O2                     <------ZmHOX2a(1)  <---------LBD16       --------->At4g35610  --------->ZAT18            --------->ALFIN1      --------->YAB1              <---------At4g35610  <---------ZAT18       --------->YAB1====================================HOX2a_HOX2a       <---------ETT(2) -------->GLK1(1)   <----------ID1<---------ICU4  <------ZmHOX2a(2)--------->TOE2(3)<---------ALFIN1   tgaaatctataacagtgggaagaggacgagagtgaatcatgtctcggaacagatcaatagcatcatctgccttaatatcgacaagcccacttctcaatct  4185900                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                               ======================                                                                               ---------->DOF2                                                                           --------->WOX13(1)                                                                          --------->AHL20(2)                                                             --------------->AGL15                                                             <---------------AGL15                                                            <-----------------AGL1                                       ------>NtERF2---------->DOF2       <---------AHL20(2)                                       --------->LBD16      <-----------------AG --------->ANAC46                         ---------->DOF2        --------->At4g35610      <---------ATHB12             --------->GLK1(1)        --------->RAP2.6(2)  <---------At4g35610--------->YAB1            <---------GLK1(2)    ---------->DOF2<---------At4g35610    --------->WOX13(1)        ----   ctctctataagacagatttctatcgctgaaagcagagaagccgcgttcgcagcaaaaagatagctcatttgggcaattaatcaaagcaattctcagagta  4186000            --------->O2            <---------TGA1a            <---------O2        <------ZmHOX2a(1)      --------->LBD16     <---------LBD16     <-----------RAV1(2)     --------->HSFB2a(2)     <---------HSFB2a(2)                                --------->YAB1  --------->ETT(2)                                    <---------ARR11(1)                 <----------DOF2  <---------ETT(2)                                   <---------CCA1(2)      --------->At4g35610 =====================bZIP_DOF                      --------->LBD16         <---------At4g35610 ------->RAV1(2)                                  <---------LBD16<-----------GT1  --------------->AtSPL8   cctgtctccaggagacgaggctgaacaaatttcgaaacttgagaactcaatctccgtatcatcaacttcaccatctcaagctgaatcgttccttttcaaa  4186100                                                               --------->At4g35610                                                               <---------ZAT2                                                               <---------At4g35610                                                               --------->ZAT2                                                           <---------DEAR3(1)                                                          --------->SPL7                                                         --------->MYB52(1)                                                        <---------SPL7                                                    <---------TGA1a                                                    --------->TGA1a                                                    --------->O2                                                    =================================bZIP_DOF                                                    --------->ANAC58                            -----                                                    =========================================MYC_MYB-                                                    --------->ANAC58                        ---------                                                    --------->ANAC46                    --------->ANAC46                                                    ----------->HVH21                   --------->ANAC58                                             --------->bZIP60(2)     <----------ID1     --------->ANAC58                                      ========================bZIP_DOF               ------->GAMYB<--                      *TSS            ---------->DOF2--------->MYB52(1)             <---------ALFIN1-              <---------ANAC46       --------->MYB52(1) ----------->HVH21 ---------->DOF2   ---------   ctctcactctcactctgtgtgtaaattgcaaaccctacaaaacagccatggcacacgacggacggagcttagagacaaaagaaacaacacccgaaacgta  4186200                                                                      <---------RVE1(1)                                                                     <---------ARR11(3)                                                                     --------->ARR11(3)                              --------->ARR14(2)                     <---------GLK1(2)                              <---------ARR14(2)                 ---------->DOF2                             <------NtERF2                    <---------ANAC55(2)                            <---------RAP2.6(3)               --------->ANAC58    <-----------GT1         --------->LBD16                   --------->ANAC55(1) -->TEIL   ------------>CBF--------->LBD16                    --------->ANAC55(2)          <---------ANAC46 ----->MYB46(1)            --------->RAP2.6(2)                --------->ANAC46          <---------ANAC46 ------>AtSPL8            <---------LBD16               --------->AHL20(2)<-----------GT1 <---------DEAR3(1) -------MYB59             <-----------------AG      <---------YAB1 ----------->ARR10    <---------ANAC58 ----->MYB83          <---------ICU4          ------->TEIL   <---------LBD16            <---------ANAC58 ------>AtSPL3       <---------ATHB51        <---------CCA1(2)--------->ANAC58<----------DOF2   ccaaataaaccggttcaattcaaattatgccggaattggttttttttgtatcttactataaaatacggaaagatttttatcttttaagttgctcggtgga  4186300                                                        --------->ANAC58                                                        --------->ANAC58                                                        --------->ANAC46                         <---------TOE1(2)              <---------O2                         <---------TOE2(2)              <---------TGA1a                        =========================HOX2a_HOX2a                        ------>ZmHOX2a(1)               --------->O2<---------ANAC58                        ==================HOX2a_HOX2a   --------->TGA1a                        <-----                   --------->DEAR3(1)          --------->ARR14(2)   <---------ANAC58    ----------->GT1                  --------->ANAC58             <---------ARR14(2) <---------AHL20(2)  --------->ZAT14                  --------->ANAC58        <------ZmHOX2a(2)       <-----------GT1     --------->ZAT18                 ------>NtERF2     ------>ZmHOX2a(2)    --------->bZIP60(2)<---------ARR14(2) <------           <----------DOF2       --------->ARR11(3)   <---------ALFIN1--------->AtLEC2<---------ZAT14   atgcatcaatggcctttggcaccctcctacgttttgatctagcgatccaaatactgccacgtctcaatttacttgcaaatagggagagtccagtaactcg  4186400                                                                                            ------>MYB46(1)                                                                                            ------>MYB83                                                                                        ------->TEIL                                                                                      <---------ZAT14                                                                                      --------->ZAT18                                                                                   <---------ANAC46                                                                                 <---------ZAT14                                                                                 --------->ZAT18                 <---------YAB1                                                  --------->ZAT14        --------->ARR11(3)                                                 --------->YAB1 <---------MYB59 ----LBD16<---------ANAC58                           --------->LBD16      <-------TEIL--------->ZAT14 ---LBD16 <---------ANAC58            <---------AHL20(2)                <---------GLK1(2)--------->DEAR3(2)   ggattagagagagcttgtttttattcactcgtgtttttgtttaatcggtctaaaccggacattgtatgttaacagattcatagtgtagtgaaccgaacat  4186500                        <---------AHL20(2)                        --------->AHL20(2)                                                      <----                <---------ANAC58                                                              <------                <---------ANAC58                                                           --------->ICU4                <---------ANAC46 <----------DOF2                                       ------->GAMYB                <---------ANAC55(2)                                              --------->TOE2(3)     <---------YAB1--------->ARR14(2)        --------->ZAT6             <-------MYC3<---------DOF5.7(2) <---------ANAC58  <---------ARR14(2)     <-----------GT1               ------->MYC3--------->MYB52(1) <---------ANAC58 <---------CCA1(2)   <----------DOF2         <---------YAB1   --------->ICU4 <------   tttgggtatcattctaatgcgtatatttatatgctcttttcttttcaccactacaatacttcttatcatttacatgtggtattcattaacggaaatatta  4186600  Previous    Next  AGI:  At1g12300.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12620.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G22470.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12775.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4183064    to: 4186122    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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