Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                ---------->ID1                                                               <-------      --------->YAB1                                               --------->YAB1          <---------DAG2     <---------ATHB12                                           --------->WOX13(1)         --------->TOE2(3)   --------->WOX13(1)                                       --------->ANAC58 --------------->AGL15 ------>ZmHOX2a(2)                                          --------->ANAC58 <---------------AGL15 ----AtLEC2<----------DOF2                               ------>ZmHOX2a(1)  ----------------->AGL2   tgatccaatcagacttttgtccatttggggctcttcccttgtaaaacacaagtgttttcctcatgccaattagactatgcctcaaatagatagccttatc  4164100         <----------DOF2        <---------ANAC58        <---------ANAC58       <------NtERF2                                                 <----------DOF2       <---------ATHB12      ------>NtERF2          ---------->ID1                        ---------->ID1         ------>MYB83    <---------MYB52(1)     <-----------RAV1(1)             <---------HSFC1(2)             ------>MYB46(1)   --------->LBD16         <---------MYB46(3)              --------->HSFC1(2)            --------->WOX13(1) <---------LBD16        <----------DOF2                  --------->ARR14(2)       <---------------AtSPL8 ----CCA1(2) <---------HSFB2a(2)       <---------MYB46(3)<---------ARR14(2)       --------------->AtSPL3 --CCA1(2)   --------->HSFB2a(2) <----------DOF2   <-----------RAV1(1)        ---------->DOF2     <--   tcttccggtggctttccaaaaccctgcttttgttgctctattggttcgagtccctgtgggatacttcttgtctttatggctaaagaagtaccaatcactc  4164200                                                            <-----------ARR10                                               ---------->DOF2          <------ZmHOX2a(1)                                           --------->AHL20(2)      --------->TOE2(3)           <-----                                    --------->MYB52(1)      --------->ARR11(3)     ---------->DOF2        <-----------------AGL1    <---------MYB52(2)        <---------ARR11(3) <----------ID1<------- -------At4g35610                 --------->MYB46(3) <----------DOF2------>ZmHOX2a(1)     --------->ICU4   tgctcttcatgcccaattttgcacaactctatttccacaaacgaataaaaaaagacttttaaaatctttccttaggaaatagagacaaagtaatgaagga  4164300                                                              <---------DAG2                                                              ------>ZmHOX2a(1)                                                              <----------DOF2                                                     ================HOX2a_HOX2a                                                     <------ZmHOX2a(2)   --------->ALFIN1                                 --------->ARR11(3)   <---------AtMYB61         --------->PCF2         <---------ARR11(3) -ZmHOX2a(1)         --------->TOE2(3)            --------->ICU4                                 <--- --TOE2(3)           --------->TOE1(3)          ---------->DOF2        <---------ATHB12          <---   tagagatggtgggattgggcaaaccttgaaggtcccatggctcaatcttgtaaagatcaatgtcctttatgaaatcaatttctattctcttcgatgcgac  4164400                                                                 ----------->GT1                                      <-------GAMYB             --------->ALFIN1                                      <---------ANAC46         ------->PIF5                                      ==================================MYC_MYB                                      ----------->GT1          --------->TOE1(2)                                     <---------MYB46(3)        <-------PIF5                                    <---------ANAC58          --------->O2                                    --------->ETT(1)          <---------O2                                    <---------ANAC58          --------->TGA1a                                  <-----------HVH21           <---------TGA1a                                 <-----------RAV1(1)          <---------ANAC58                                 ----------->HVH21            <---------bZIP60(2)      <-----------RAV1(2)      <---------At4g35610            <---------ANAC58                     <-     ------>ZmHOX2a(1)         --------->At4g35610         ----------->HVH21                     ---- <-----------GT1        <---------ARR11(3)             --------->LBD16                ---------->ID1 ------DAG2             --------->ARR11(3) --------->GLK1(1)  <---------ANAC46       *TSS    -------- -------DOF2       <---------REM1(2)<---------ANAC46 <---------LBD16            <---------YAB1  -----   ttttttcctcaggtagtagtctacaagttcttcatctgtcgggtgaaatctaaaacccggagggacgtgggaaaatgaattcatgtttgtcttcttgatc  4164500                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                            <--------                                                                                            ---------                                                                                           <-------TEIL                                                                                       --------->MYB111(2)                                                                                       --------->MYB46(2)                                                                                       --------->MYB111(1)                                                                                       <---------MYB46(3)                                                                                       ----------->GT1      --------->At4g35610   ------>MYB83                                            <------MYB83     --------->GLK1(2)      ------>MYB46(1)                   --------->TOE1(2)     <------MYB46(1) --------MYB52(1)         <---------MYB46(2)                ------->TEIL            ------------>MYB.PH3(2) ------->GT1              --------->MYB46(3)          <---------ATHB51             --------->MYB59 ->ATHB12              <-----------GT1                --------->ICU4 ----------->GT1<---------STY1(2) ->ZmHOX2a(2)  --------->YAB1             ---------->DOF2<---------YAB1   <-----------TBP <----------   ggttaataatctgcctataagaaaatcaccaaacaaatcgaaaacaaagtcatgaaattatgaacataagaaggttatatatagctaggtagttacatat  4164600        <---------YAB1 ----ARR11(3) --->ARR11(3)                                                      --------->CCA1(2) ---CCA1(2)                                                       <---------ARR11(3) -ANAC55(2)                     --------->ETT(2)  --------------->AtSPL3  ----------->GT1          -- >ANAC55(2)                <---------ICU4   --------->ATHB12      --------->AHL20(1)              --- -GT1 <---------ZAT6      <---------YAB1   <---------YAB1  --------->At4g35610             ----------   cttacatagtgtgattgtgaattagttgattatttcgacagacatatgattagacgtactatgctgaatatataagaggttgaattcaaaatcgaaagga  4164700                                                                                                  <--                                                                                                  ---                                                                                                <----                 <---------ICU4                                                              <------MYB83   <-----------HVH21                            --------->REM1(1)                            <------MYB46(1)   <-----------TGA1                         <---------ANAC58                            --------->MYB59 ------->YAB1   --------->AHL20(2)          <---------ANAC58                        --------->MYB52(2) ------>ICU4    <---------AHL20(2)    <-----------GT1                             <---------MYB52(1) >DOF2      --------->AHL20(2)     <---------ZAT6    ---------->DOF2              <--------P---------   attatcgtcagacatttattaattacaagaattagttgtgttacatgcttacatctaaagaaatatgtgaagactattcacatggttagttatgtaggtt  4164800      --------->AHL20(1)                                                                       <-----      --------->AHL20(2)                                                                      <------      <---------AHL20(1)                                                                    <--------      <---------AHL20(2)                                                               --------->AHL20(2)  --------->ICU4                                                                       <---------AHL20(2) <---------ARR11(3)                                              ----------->GT1       --------->YAB1 -------HSFB2a(2)                                              ---------->DOF2        <---------ATHB12 ------>HSFB2a(2)        ---------->DOF2        --------->MYB52(1)        ----------->GT1  <--------- ---TEIL  --------->AHL20(2)              --------->At5g28300--------->ANAC58    --------->ANAC58 <-- >MYB59   <---------AHL20(2)             ----------->GT1     --------->ANAC58    --------->ANAC58----   cgagataattaattaaactcactagtttaaagtcatggactcatggtaaataactgaattttcaagaaagtaaaatcagtgaaacccaattatataccgt  4164900                                                                   <---------AHL20(2)  ----------->GT1              --------->YAB1                      --------->AHL20(2) ----SPL7            <---------AHL20(2)  <---------At4g35610       <---------AHL20(1) ---ANAC46          --------->AHL20(2)   --------->At4g35610      <---------AHL20(2) -At5g28300      --------->ATHB12 --------->ATHB51                --------->AHL20(2) --GT1   ----------->GT1   --------->At4g35610                   <---------YAB1        <-----------GT1 -------YAB1   <---------WOX13(1) <---------ICU4               <--------HAHB4  <---------At4g35610 ----->SPL7 <---------AHL20(2)<-------TEIL                    --------->ICU4  <---------YAB1   ------   atgatggtatatagttaattgatttaatgagatgcataatttcagcttcaaatagactagatcgattattaaatttgattctgcttatatttccatctaa  4165000  Previous    Next  AGI:  At1g12260.1    Description:  VND4 (VASCULAR RELATED NAC-DOMAIN PROTEIN 4); transcription factor. similar to VND5 (VASCULAR RELATED NAC-DOMAIN PROTEIN 5), transcription factor [Arabidopsis thaliana] (TAIR:AT1G62700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70322.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) Range:  from: 4162830    to: 4164485    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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