Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------  <---------ARR14(2)                                                                        ---------  --------->ARR14(2)                       ----------->HVH21                               <---------AtMYB61 <------ZmHOX2a(1)                <---------ANAC58      <---------YAB1                  <---------AtMYB61 --GAMYB ----------->HVH21        <---------ANAC58   <---------YAB1                     --------->ALFIN1 ---ANAC46            ----------->GT1    <---------ANAC46                      <---------ZAT6<-------GAMYB   tgaggagccccatgacccaaaaaatgggaaaatggttcttgtgatgtgaaggaatattatgagtctcagttctcttaagtagagtttgatgtggtggttg  4143700                    <---------At4g35610                    --------->At4g35610               <---------TOE2(3)         <---------ZAT14                                                                         ----         --------->ZAT14                                                                         ----      <---------ANAC46                                                                        -------  <---------At4g35610     --------->ARR11(3)                                                  <------  <---------ZAT2   <-------TEIL            --------->YAB1                               <---------ARR14(2)  --------->ZAT2  <--------P       --------->ALFIN1                                    <------ZmHOX2a(1)  --------->At4g35610 ----------->HVH21   <---------YAB1                          <---------ANAC46--- -MYB46(3) --------->At4g35610   <---------ANAC46             <----------DOF2    --------->At4g35610 >MYB55(2) <---------At4g35610  <---------AtMYB61        <<<<<<<<<TBF1           <---------At4g35610   agacagctccgtctactgaggtagatgacatcttgaggtggattatcatcaagagtttcttcttctttacgcttagggctcgtagcggaggaatcgaatc  4143800           ------>NtERF2          <---------ETT(1)          ----------->HVH21                               --------->YAB1          --------->ANAC46            --------->ZAT6     --------->KAN4(1) <---------At4g35610             --------->YAB1         <---------KAN4(2)      --------->AHL20(2) ----->TOE2(3)               --------->AHL20(1)        --------->YAB1         --------->AHL20(2) ----->TOE1(3)               <---------AHL20(1)<---------YAB1        <---------ATHB12 -->ARR14(2)           ------>ZmHOX2a(1)     ----------->GT1       --------->WOX13(1) ---ARR14(2)     <---------DAG2--------->AHL20(2)    <---------TOE2(3)        <---------ATHB12------- --->ZmHOX2a(1)  <----------DOF2<---------AHL20(2)--------->ICU4 <---------ATHB12   ---------->DOF2   cttagctaatctccgacaacttttcctgtaatatataataacacaagttgtaattaagaataatcaaatcaatgaattcaataaataaaagcctagatga  4143900                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                            --------->YAB1  <--------                                   --------->TOE2(3)                        --------->AHL20(2)                                   --------->TOE1(3)             <------ZmHOX2a(2)          ---------                         ----------->GT1                        --------->ARR14(2)          ---------                         <---------ANAC55(2)<---------AHL20(2)  <---------ARR14(2)        <---------ALFIN1 ---->HVH21        --------->ICU4 ----------->RAV1(2)        ------>ZmHOX2a(2) ---------->DOF2   cagaaatatttctcaattgcaaagattaagtgaataacctgaatatgaaattgatcagagtgatccgatcccttcaaattataaagtctcgcacacgtac  4144000                                                                          <---------ALFIN1                                                                     ------>NtERF2                                                                 --------->PCF2                                                                 <---------TCP20                                                                 --------->ANAC46                                                                ------>NtERF2                                                               --------->ANAC46                                                               --------->ANAC58                                                               --------->ANAC58                                                               <---------ALFIN1                                                               ------->GAMYB   <---------LBD16                                                               --------->DEAR3(1) ------>NtERF2                                                              <---------MYB55(2) --------->LBD16                                                            ------>NtERF2------>NtERF2                                                           <---------ALFIN1<---------ALFIN1                                                          --------->MYB46(3)   --------->SPL7                                                         --------->DEAR3(1)<---------ATERF1(1)                                                        --------->ANAC46--------->DEAR3(1)                                                        <---------TCP20 <---------ALFIN1                                                        --------->PCF2  ------->GAMYB                                                       ------>NtERF2<---------ALFIN1                                                      --------->DEAR3(1)--------->ANAC46                                                      --------->ANAC46  --------->ANAC58                                                      --------->ANAC58  --------->ANAC58                                                      --------->ANAC58 --------->MYB46(3)                       <---------ANAC58               ------->GAMYB--------->MYB46(3)                       <---------ANAC58               <---------ALFIN1<---------ALFIN1         <----- >ANAC55(1)            --------->ANAC55(2)           --------->MYB46(3)--------->DEAR3(1)   --------- >ANAC55(2)            <---------ANAC55(1)   --------->ANAC58 --------->DEAR3(1) ------>NtERF2 ------ >ANAC46               <---------ANAC55(2)   --------->ANAC46 --------->MYB46(3)--------->DEAR3(1) -ANAC55(2)       <---------ICU4    <---------YAB1<---------ALFIN1--------->DEAR3(1)  --------->MYB52(1) >ANAC58         --------->ICU4    <-----------HVH21 <---------MYB55(2)<---------MYB55(2) >>>>>>>>>NAM >ANAC58     <------------------ATHB9        --------->ANAC58<---------ALFIN1<---------ALFIN1--------   tgaattttcttccagcgtaaacattacgtttcgatgttgtcataggcccgaaacacccgccccacccgccccacccgcccctccggcccaagggatgatg  4144100                                                          ----------->TBP                                                        <-----------TBP                                                        <---------AHL20(2)                                                        --------->AHL20(2)                                                      <-----------TBP                                                    <---------AHL20(2)                                                   --------->AHL20(1)                                                   <---------AHL20(1)                                                  <---------AHL20(2)                                                <-----------TBP                                   ---                   ---------->ID1               --------->AHL20(2)                               ----        <---------ATHB12                      <-----------TBP                                    ---- ----YAB1     <----------DOF2  ------>ZmHOX2a(1)<---------AHL20(2)             <---------DAG2    ---- >ICU4  --------->ICU4<----------DOF2         <---------AHL20(2)               <----------DOF2  <---- --->ICU4 <---------GLK1(2) ------>NtERF2     --------->AHL20(2)          <---------MYB59<---------YAB1 ->YAB1 <---------YAB1------>ZmHOX2a(1)     <-----------TBP    <-----------HVH21    <-----------GT1   attcttccccatgattcttttgtcctttgcctcctaaaccctagctatatatatatatttatatatgtcatttgggcctaactttttttctattattcca  4144200                                         --------->ANAC58                                         --------->ANAC58                                         --------->ANAC55(2)                                         --------->ANAC46                                       --------->SPL1(1)                                       <---------SPL1(1)                                      <---------RAP2.6(3)                            <------MYB83                                      <---------SPL1(2)                             <---------TOE1(2)                                      <---------SPL7                                <---------TOE2(2)                         <---------AHL20(2)                                        <---------MYB52(1)                         --------->AHL20(2)          <---------ICU4               <-------GAMYB                        <---------ATHB12--------->SPL1(2)                        <---------MYB46(3)              <------MYB46(1)       --------------->AtSPL3                       <---------ANAC58   <---------ALFIN1   --------->WOX13(1)--------->SPL7  <---------WRKY18(1)      <---------ANAC46 ------>DEAR3(1)    ------------>CBF<---------------AtSPL3          --------->TOE1(3)<---------MYB46(3) ----->ANAC58 <------MYB83         <------------------SPL14         --------->TOE2(3)<------MYB46(1) ----->ANAC58--------->MYB59      ------------------>SPL14      ---------->DOF2  <---------ANAC58 ----->ANAC46<---------AtMYB61    <-----------GT1  <---------ARR11(3)      --------->DAG2 -----LBD16<---------MYB52(1) <----------DOF2      --------->ARR11(3)     ---------->DOF2        <---   cggcccaacttcggtttggtttgtcaattaatcttttagccgtacggaatcgaaatcttgaccccttaaacctcaaaaaagtgtcgttggttttgttctg  4144300                              <---------ANAC58                              <---------ANAC46                              <---------ANAC58                 --------->At4g35610                                                        <--------                 <---------At4g35610                                                   <---------ZAT6      <----------DOF2    <---------ICU4                                            <---------YAB1      <---------DAG2  <---------ETT(2)                         --------->ZAT14 <------------CBF    <- ------MYB52(1)--------->REM1(1)                     --------->MYB46(3)  --------->ATHB12 <---------YAB1   ttactctgctttttgcttcatctgtcaacatgacttgcacatcaaacttctaacaacaactccagtttagttgtatgtttggattgtgagtgttcattgt  4144400         >>>>>>>>>ARR1         >>>>>>>>>ARR2         <------------CBF         >>>>>>>>>ARR1                                 <---------ZAT18         >>>>>>>>>ARR2                                 --------->ZAT14                              <   <---------STY1(2)                                  <---------ZAT6                --------->CCA1(2)  ------->TEIL                                 ------>ZmHOX2a(1)             --------->YAB1     ----- ----CBF<------ZmHOX2a(1)      ----------->GT1--------->ANAC55(2)       ------>ZmHOX2a(1)       ----- --------REM1(1) <---------AHL20(2)           --------->TOE2(3)        --------->TOE2(3)   <---------   aatgtagctaggattgtattttaagtgggaagaatgtgaaaatatgttccttaatagtgttctctctctgtttcctcaagtataagatagaagaagacaa  4144500                                         <-----------HVH21                                       <-------TEIL                                      <---------ALFIN1                                    <------MYB46(1)                                   --------->ANAC58                                   --------->MYB59                                    --------->ANAC58                             <---------------AGL15                                    --------->ANAC46                             --------------->AGL15                                   --------->ZAT18         --------->YAB1     <-----------------AGL2                                 <---------ZAT14        <---------YAB1      <-----------------AG                                   --------->ZAT14 ---------YAB1              <-----------------AGL3        <-----------GT1          --------->ZAT18 ---->ANAC58                <-----------------AGL1    <---------AHL20(2)           <---------ZAT18 ---->ANAC58             <---------GLK1(1)   <---------At4g35610                 <---------ZAT18 -ID1 --------->YAB1  <---------YAB1<------MYB83      <---------YAB1             --------->ZAT14   gtatgctagtatgatgagttgattttgatttctcaatttggttcgtcagcctattttttattaccctatgtgatcaattccagtgtgcacaccacttgtt  4144600  Previous    Next  AGI:  At1g12210.1    Description:  RFL1 (RPS5-LIKE 1); ATP binding / protein binding. Identical to Disease resistance protein RFL1 (RFL1) [Arabidopsis Thaliana] (GB:Q8LGP7;GB:Q8LGP8;GB:Q8LGP9;GB:Q8LGQ0); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G12290.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G12280.1); similar to RPS5 (RESISTANT TO P. SYRINGAE 5) [Arabidopsis thaliana] (TAIR:AT1G12220.1); similar to disease resistance protein [Arabidopsis lyrata] (GB:ABB00216.1); similar to RFL1 [Arabidopsis lyrata] (GB:AAL65637.1); similar to disease resistance protein [Ara Range:  from: 4140946    to: 4143603    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g12211.1    Description:  unknown protein Range:  from: 4143864    to: 4144112    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version