Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------ALFIN1      --------->AtMYB61     --------->MYB46(3)   <---------ALFIN1   --------->DEAR3(1)   --------->AtMYB61                                                     ------>ZmHOX2a(1)  --------->MYB46(3)    <---------TOE1(2)                            <---------ALFIN1 -------->AtMYB61      ------>ZmHOX2a(1)                           ------>ZmHOX2a(1) -------->ANAC46 --------->SPL7                                   <---------ALFIN1 ---------ALFIN1------>ZmHOX2a(1)                               ------>ZmHOX2a(1) ------->MYB46(3)<---------TOE1(2)   ------>NtERF2         <---------At4g35610                  ----- ---ICU4 <---------ALFIN1        --------->DEAR3(1)        <---------GLK1(1)                   ------ -->YAB1 --------->AtMYB61<----------DOF2                 ------->TEIL------>ZmHOX2a(1)        <-----   caccaccaccaccatctcctacgtcctactttccaccgatgccaagcgtctcatatgatgcatctcctcctcctcctccgtcttactactagtttcaacc  4072400                             <---------TOE2(3)             <---------DEAR3(1)       --------->AHL20(2)   --------->MYB52(1)       <----------DOF2         <---------ANAC58       <---------AHL20(2)   <-----------GT1    <---------AHL20(2)            <---------ANAC58 ----------->GT1       <---------YAB1          --------->AHL20(1)     <---------AHL20(2) ---->ATHB12           --------->ICU4          <---------AHL20(1)     --------->AHL20(2) --->MYB46(3)      <---------DAG2             --------->YAB1 <------NtERF2   <---------ANAC46-------- ----ATHB12 <-------TEIL--------->ATHB12      --------->AHL20(2)    <----------DOF2         <--------   attgagtaaaaaaatgcattgccttatgattaacgagactactcacaattatattcttttggctgcgagactttaatttgtgtgttttgttgatttaaag  4072500                               --------->AHL20(1)                               <---------AHL20(1)                              --------->ICU4                       <---------ANAC58                                      --------->At4g35610                  <---------------AGL15                                      <---------ZAT2                  --------------->AGL15                             ----------->HVH21     <---------ARR11(3)<---------ANAC58                         ---------->ID1          --------->At4g35610     --------->ARR11(3)<---------ANAC46                         <-----------GT1 --------->At4g35610 ---------->DOF2  <---------DAG2          <----------DOF2      <-----------GT1  <---------At4g35610 -->DOF2          <----------DOF2      <-----------GT1     <----------DOF2   <---------At4g35610  <-- -AHL20(2)    <---------MYB52(1)  <---------AHL20(2) --------------->AtSPL8  --------->ZAT2       ---   aaaaaaagacattccagttactttttcttgtaatatttttttttcttttggatattatgttcttttttccctaacacagagctgctcattagcagcaatg  4072600                                                             --------->YAB1                                                      ----------->GT1                                                    ---------->DOF2   <----------DOF2                                                 --------->YAB1 <---------AHL20(2)                  <                                                <---------AHL20(2)    ------>ZmHOX2a(1)            --                   --------->AHL20(2)       --------->AHL20(2)  <---------ICU4                     <- -------ANAC46     <---------AHL20(2)   ----------->GT1    --------->AHL20(2)                     --- -------->GT1     --------->AHL20(2)    <---------ANAC46--------->AHL20(2)                 --------->TOE2(3)   gagtatatagtttcagtttatttaatttgatactaaaatgttctgtataaataataaagaaaataataaatcctttcacaaaatccatttttatctcaaa  4072700                                     <---------WRKY12                                    --------->DOF5.7(2)                                  <---------bZIP60(1)                                  --------->O2                                  <---------O2                                  --------->bZIP60(1)                                      <---------ALFIN1                                  <---------ANAC46                                       -------->P               <---------WOX13(1) <---------TGA2(1)                                      ------>MYB46(1)            <---------AHL20(2)    --------->TGA2(1)                                      ------>MYB83            --------->AHL20(2)   <-----------STF1                                       --------->MYB55(1)           --------->AHL20(2)    ----------->STF1                                      <---------MYB46(2)    --------->AHL20(2)          <---------TGA2(2)                   --------->At4g35610<---------MYB111(2)  <------------CBF           <---------ICU4                    --------->ANAC58        <---------MYB59 ---------YAB1<------------CBF ----------->TGA1              --------->MYB52(1)--------->ARR11(3)   < ------->AHL20(2)           --------->ICU4          <---------ICU4  <---------At4g35610<---------MYB111(1) --------AHL20(2)         ---------->DOF2         *TSS--------->At4g35610      --------->GLK1(2)    < ------>AHL20(2)       ----------->GT1           --------->YAB1--------->ANAC58<---------ARR11(3)   <   ttaaaattgaatatttaattgaaaactgtaaagatgacgtcaacttctcagtcatcatctcaaaaacggaagcttaagaaaaatctatacctaccacttc  4072800                                                             <-------TEIL                                                          --------->GLK1(1)                                                      --------->DEAR3(1)                                                     <---------LBD16                                               <---------HSFB2a(1)                   <---------ARR14(2)                                               <---------HSFC1(2)         <------NtERF2         <----          ------>ZmHOX2a(1)             --------------------->WRI1      <---------DEAR3(1)      <<<<<    --------->ZAT6                     <---------ANAC58 <------NtERF2<---------DEAR3(1)    --------->ARR14(2) ---------MYB52(2)    --------->HSFB2a(2)      --------->HSFB2a(1)--------->ANAC46   --------->GLK1(2) ------------MYB.PH3(2)       <---------LBD16  --------->HSFC1(2)--------->SPL7<----------DOF2------- ---------MYB59   <----------DOF2      <---------ANAC58--------->LBD16 <------NtERF2 --------->ARR14(2)   gaactaactctcctctctcgcttactggaatttggggattagcttgggaaacttcgccggagattcatacgtcgtcgtcgtctttagtatctgtatcgtc  4072900                                                               <---------MYB52(1)                                                              <---------DAG2                                                         --------->HSFB2a(1)                                                         <---------HSFB2a(1)      --------->At4g35610                               --------->GLK1(2)      <---------At4g35610                               --------->ARR14(2)    <<<<<<<<<MYB2                                       <-----------ARR10   <-------GAMYB                                     --------->LBD16  <---------bZIP60(2)                               <---------HSFB2a(2)                             -  <---------ANAC58                               --------->ARR14(2)                       --------->ANAC58  <---------ANAC46                      <---------ALFIN1<---------ARR14(2)                --------->ANAC58  <---------ANAC58                    --------->ANAC58 <---------GLK1(2)           --------->ARR14(2) -----WRKY12                          --------->ANAC58 --------->ARR14(2)          <---------ARR14(2) <<<<WRKY18                      ----------->ARR10  --------->HSFB2a(2)          --------->LBD16    - -->TOE2(3)             <-----------RAV1(1)      <---------ARR14(2)            <---------LBD16     --   aatggcgttgctgaagtctttcatcgatgttggctcagactcgcacttccctatccagaatctcccttatggtgtcttcaaaccggaatcgaactcaact  4073000               --------->MYB52(1)          <------NtERF2         ------>NtERF2         <---------RAP2.6(3)        <---------O2        --------->DEAR3(1)        <---------ATERF1(2)                           <---------At4g35610                   <--------        <---------ANAC58                   <---------MYB52(1)                         --------->ANAC58        <---------ANAC58            --------->AtMYB61 --------->ZAT2                  --------->ANAC58        --------->ATERF1(2)       ------->TEIL        <---------ZAT2                <------ZmHOX2a(1)        --------->bZIP60(1)    --------->HSFB2a(2)    --------->At4g35610      ------>ZmHOX2a(1)     ------>ZmHOX2a(1)         <---------HSFB2a(2)----------->HVH21           --------->TOE1(3) <---- -------->TOE1(1)         <------MYB83    --------->At4g35610                 --------->TOE2(3)<----- -------->TOE2(1)         <------MYB46(1) <---------At4g35610<---------DAG2  ------>ZmHOX2a(2) <----- ---->ZmHOX2a(1)      <---------ARR14(2) --------->ANAC46    <----------DOF2 ==============HOX2a_HOX2a   cctcgtcctgccgtcgctatcggcgatttggttctggacctctccgctatctctgaagctgggcttttcgatggtctgatccttaaggacgcagattgct  4073100                                                                   --------->LBD16                                                                  <---------ANAC46                                                                  <---------ANAC55(2)                                                            --------->HSFB2a(1)        --------->MYB52(2)                                  <---------HSFB2a(1)       <-------TEIL                                    --------->LBD16  <-----------RAV1(2)                                 --------->LBD16            --------->ARR14(2) - -WOX13(1)                                           --------->TOE1(2)           <---------ARR14(2) < ------DOF2            ------>ZmHOX2a(1)             <---------LBD16     --------->ATHB12          <- ----ANAC58   <-----------GT1                       ----------->RAV1(2)  <---------ICU4        ------ ----ANAC58  <-----------GT1  <---------LBD16     --------->ZAT18 --------->ANAC55(2)         -------   ttcttcaggttcgtttttccgattcctataaactcggattactatgtagtagtaccctgggaatgtttccgtaaatgatttcgaatttgctatttgaacc  4073200                                                                                              -------                                                                                      <---------ANAC46 ------>ZmHOX2a(2)                                                                    <---------ANAC58 -------->GLK1(1)                                 ----------->GT1                     <---------ANAC58 ---------GLK1(1)                   --------->WOX13(1)                            <-------GAMYB --------ARR11(3)                   --------->KAN4(2)                          <---------ANAC58 ----->RAV1(2)         --------->ATHB12    <---------MYB52(1)                  <---------ANAC58 >TEIL      --------->At4g35610   <------ZmHOX2a(2)                    --------->ANAC46      <-------TEIL   tgatctctgaagtttgctccatggtttattggatagatcaatcccgtttagctcgaaaaaaatccattgttctactcaattgctcgttgcttcgattcat  4073300  Previous    Next  AGI:  At1g12040.1    Description:  LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); protein binding / structural constituent of cell wall. similar to LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2), protein binding / structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G62440.1); similar to leucine-rich repeat/extensin [Nicotiana plumbaginifolia] (GB:BAF48663.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 4070122    to: 4072565    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g12050.1    Description:  fumarylacetoacetase, putative. similar to hypothetical protein [Vitis vinifera] (GB:CAN77935.1); similar to unknown [Populus trichocarpa] (GB:ABK92546.1); similar to Fumarylacetoacetase [Medicago truncatula] (GB:ABD33010.1); contains InterPro domain Fumarylacetoacetase, N-terminal; (InterPro:IPR015377); contains InterPro domain Fumarylacetoacetase, C-terminal-related; (InterPro:IPR011234); contains InterPro domain Fumarylacetoacetase; (InterPro:IPR005959); contains InterPro domain Fumarylacetoacetase, C-terminal-like; (InterPro:IPR002529) Range:  from: 4072750    to: 4076205    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version