Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <---------TOE2(3)                                                                         ------>ZmHOX2a(2)                                                                        <------ZmHOX2a(2)                                                                        =============HOX2a_HOX2a                                                                        --------->CCA1(2)                                                                       --------->ARR11(3)                                                                       <-----------ARR10                                                                       <---------ARR11(3)                                                                       <---------AGP1                       --------->HSFB2a(2)                             --------->AGP1                       <---------HSFB2a(2)                    ==================HOX2a_HOX2a              <---------ANAC58                                <------ZmHOX2a(1)     <---------YAB1              <---------ANAC58                                =================HOX2a_HOX2a <---------     <---------YAB1 <----------DOF2           --------->MYB46(3)   ---------->DOF2--------->YAB1 ----------DOF2    <---------DAG2    <---------At4g35610    <---------TOE1(2)    --------->ICU4 <---- ----DOF2--------->MYB52(2)     ----------->HVH21           <---------TOE2(2) <------ZmHOX2a(1) -----   ctcttttatgctagttgctcaccttttggaagacttgacaactgatgaacaactcttactcataggattgaaagatctaaggaatgatgatatatacacg  4069700                                                                  -------->ZAP1                                             --------->ALFIN1    <---------At5g28300                                           <---------ANAC58     <---------WRKY18(1)                                           <---------ANAC46    --------->WRKY12                                       <---------ANAC58        --------->WRKY38(1)    <---------ANAC58                                       <---------ANAC58        ----------->HVH21      ------>ZmHOX2a(2)   ----------->HVH21        <-----------------AGL1             --------->WRKY45       <---------ANAC58 --GT1        <---------ANAC58      <------MYB46(1)          --------------------->WRI1    <--------- ---MYC3      <---------ANAC58      <------MYB83         <----------DOF2            <---------ARR11(3) -->MYC3     <-------TEIL  ---------->ID1  <---------ANAC58  <----------DOF2        --------->ARR11(3)   tttttgtgacagacatgcgtccaagttttgttcccatttggtcgtgcgtgcaggtttctctttctttgaccgcttctaattccatagatcgtgctataat  4069800                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                 ----                                                      <---------At4g35610                       <----                                                      --------->At4g35610                       -----                                                     ------>NtERF2                              -----                                                    <---------RAP2.3(3)                         -----                                                    <---------RAP2.3(2)                         -----                                                   --------->RAP2.6(3)                          <----                                                  <---------DOF5.7(2)                           -----                                                 --------->WRKY12                               -----                                                 --------->WRKY38(1)                            <----                                                 ----------->HVH21                             <-----                                                --------->DOF5.7(2)                            <-----                                             <---------TOE2(3)                                 <-----                                             <---------TOE1(3)               <---------YAB1    ------                                            <---------DOF5.7(2)       <----------DOF2       <------ZmHOX2a(1)                      <-----------GT1       <-----------GT1     <---------AHL20(2)       --------->HSFB2a(2)                <---------ARR11(3)    <---------YAB1<---------RAP2.6(2)    --------->YAB1<---------HSFB2a(2) -DOF2      --------->YAB1      <----------DOF2--------->TOE1(3)--------->AHL20(2) <---------GLK1(2)<   gtagttttgagttatcaacatattaaactctatactttatatgatttaacgttgacggctgactattttattctttaacatcatagaacctctaggaacg  4069900 --------ANAC58 --------ANAC58 -----TEIL ----->ALFIN1 ---PIF5                                            <---------At4g35610 -->MYC4                                            --------->At4g35610 ---->TOE2(2)                               ---------->DOF2 ---->TOE1(2)                             --------->LBD16 -->PIF5                                 --------->ANAC58 ---MYC2                                 --------->LBD16 -->MYC2                                 --------->ANAC58 -->MYC3                                 --------->ANAC46                             <-------MYC3 ---MYC3             ----------->TGA1   --------->LBD16   ----------------------->TaNAC69(2)    <---- ----HSFB2a(1)       ----------->HVH21  <---------LBD16 <----------DOF2               ------->MYC3 ----ANAC58  <------ZmHOX2a(1)         <-----------------AGL1 ---------->ID1         <---------ANAC46 ----ANAC58<---------TOE2(3)<---------MYB46(3)      <---------ZAT2       <---------MYB52(1)    ------ --->HSFB2a(1) --------->GLK1(1)  <-----------GT1 <---------WRKY12      --------->TOE2(3)    <------- ---------PCF2 <---------GLK1(1) <-----------GT1<-----------HVH21      --------->ANAC46 --------->REM1(2)   tgcgtccaagtttgaggaattcagtgacgatggttttatctccccgcaaaggtcagctctttttgtcttctctacgttatttcatcaacgtgtaaacatg  4070000                                                              <----------DOF2                                                         <-------TEIL                --------->LBD16                         --------->ARR14(1)               --------->ANAC55(2)                      --------->CCA1(2)               <---------ANAC55(2)                     <---------ARR14(2)    <---------WOX13(1)  ---------->DOF2                --------->ARR14(2) -------HVH21  ----------->GT1      <------------CBF   --------->ARR11(1) --->bZIP60(2) <---------ANAC46 ----------------->AGL1--------->CCA1(2)                        <----- --ICU4       <---------LBD16 <----------ID1     ---------->DOF2                      ---------->DOF2   tcactaattgaaaatttccgtaaaaaaaaagaaggccaaattggagagagagaaagagatacgactttggaatttctaaactgttttataaagatggagc  4070100                      --------->ICU4                      *TSS                    <--------HAHB4                    <---------ICU4                    --------->ATHB51                   <---------YAB1                 --------->ANAC46                   --------->ICU4               ---------->DOF2                 --------->YAB1           <---------WRKY18(1)      --------->CCA1(2)                <---------ANAC58     --------->ARR11(3)           <---------ANAC58--------->ANAC58     <---------ARR11(3) ----------->GT1<---------ANAC58                          <----------DOF2 ----At4g35610  <-------TEIL      <---------ANAC58--------->ANAC58  ------>ZmHOX2a(1)    <-----------GT1   acatagagatattagatgttcataattagtaaaattgggtttcttgacccataagcaatgttgttccctcctcttcgttccctctttctcttcaccctct  4070200                                                    --------->O2                                                    <---------ANAC46                          ====================================bZIP_DOF                          ---------->DOF2           ===========================bZIP_DOF             -                <---------ANAC58                    <---------TGA1a ---------->DOF2                --                <---------ANAC58                    <---------O2--------->GLK1(1)           <--------           --------->MYB52(2)                ---------->DOF2    <---------bZIP60(1)         ---------           <---------MYB46(3)                =================bZIP_DOF                      <--------         <---------MYB52(1)          --------->ANAC46      ----------->GT1    --------->MYB52(1)-----     ------>ZmHOX2a(1)  <---------ATHB12   <---------YAB1<---------------------WRI1         ---------   tgctctcctccgtttgtttcttacaaatcaaagcagaccacgacgatgaaagcgacttgggcagtgatatcaaagtagacaaacgtctcaagttcgagaa  4070300        <-----------HVH21       --------->REM1(1)       --------->ANAC58       --------->ANAC58       --------->bZIP60(2)      <-------TEIL   --------->HSFC1(2)   <---------ZAT2   <---------HSFC1(2)                     --------->ANAC58   --------->ZAT2                         --------->ANAC58 -------->LBD16                          --------->DAG2 ------->ANAC46                         ---------->DOF2 -HSFC1(1)                         ----------->GT1                       --------->At4g35610 >HSFB2a(2)                     --------->YAB1              ------>ZmHOX2a(1) -HSFB2a(2) --------->ANAC58    <---------ICU4            ------>ZmHOX2a(2)                <---------At4g35610 ---->GLK1(2)                  <---------ATHB12  <----------DOF2         <---------At4g35610 >HSFC1(1)  --------->ANAC58 --------->WOX13(1) <---------ICU4     <-----------HVH21     <-----------RAV1(2)   cccgaagctacgtcaagcctacattgctcttcaatcatggaaaaaagcaatcttttctgatcctttcaacttcacagctaattggaatggttcagatgtt  4070400                                                                                            <--------                                                                                          <---------DEAR3(2)                                                                                          -----------                                                                     --------->TOE2(3)    <---------MYB46(3)                                                                  <---------WRKY18(1)    <---------DEAR3(1)                                                                 --------->WRKY38(1)   ------------>AtMYB77                                                                 --------->WRKY12  <---------bZIP60(2)                                                             <------NtERF2         ================MYC_MYB                                                            ------>NtERF2          <---------O2<-----                                                           <---------ATERF1(2)     <---------TGA1a                                                           --------->ATERF1(2)   ------>NtERF2 <-----                                                          <---------ANAC58      ----------->HVH21   <                                           ==================================================bZIP_DOF                                         --------->LBD16  <---------ANAC58   --------->ANAC46 -------                                        --------->LBD16  <---------ZAT2    ------->GAMYB<---------ANAC46                                ------>ZmHOX2a(1)    <---------MYB46(3)    <---------ALFIN1<-------GAMYB                          ------>ZmHOX2a(1)---------->DOF2<---------ANAC46 ==================MYC_MYB<   ------>ZmHOX2a(1) <---------At4g35610--------->ANAC46 --------->ZAT2   --------->MYB46(3)---------   tgctcctacaatggaatctattgtgctccttctccttcatacccgaaaacccgagtcgttgctggcattgacctcaaccacgctgacatggccggttact  4070500       <---------ZAT2       --------->STY1(2)       --------->ZAT2       <---------STY1(2)    <---------ANAC58    <---------ANAC58                                             --------->ZAT14 -MYB52(1)                                                     --------->At5g28300 >GT1--------->LBD16                                          <---------ANAC46 ----ANAC58<------MYB46(1)                                   <---------DEAR3(1)               <------ ----ANAC58<------MYB83                                     <---------ZAT14           ------->GAMYB ---------ANAC58        --------->ARR11(3)                  <---------LBD16         <---------At5g28300 -->MYB52(2)      ------>ZmHOX2a(1)   <---------ALFIN1  --------->ARR14(2)         <-----------GT1 ---------ANAC58  ===============HOX2a_HOX2a            <---------ARR14(2)   <---------TOE1(2)------- >ARR14(2)--------->MYB59 ------>ZmHOX2a(2)            <---------MYB52(1)  ----------->HVH21 ------->TEIL   tggcttccgagctaggtctcctctctgatctcgctctgttccacattaactcaaaccgtttctgcggtgaagtccctctcacgtttaaccgcatgaagct  4070600  Previous    Next  AGI:  At1g12040.1    Description:  LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); protein binding / structural constituent of cell wall. similar to LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2), protein binding / structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G62440.1); similar to leucine-rich repeat/extensin [Nicotiana plumbaginifolia] (GB:BAF48663.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 4070122    to: 4072565    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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