Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           ---------->DOF2                    <------NtERF2                   ----------->GT1                  --------->ANAC58                  --------->ATERF1(2)                  --------->ANAC58                 --------->SPL7       ----------------->AGL2                                                        <---------AHL20(2)       ----------------->AGL1                                                  --------->YAB1 --ZmHOX2a(1)    --------->RAP2.6(3)                                        --------->TOE1(3) ---->YAB1      --------->MYB52(1)                 <---------AHL20(2)       --------->TOE2(3) ----->GT1     ----------->HVH21                  <---------AHL20(1)        --------->YAB1 ---TOE2(3)    <---------SPL7                     <---------AHL20(2)  --------->ANAC46 -->AGL15  <---------ARR14(2)             <-------TEIL                --------->ANAC58              - ---AGL15  --------->ARR14(2)---------->DOF2      --------->AHL20(2)  --------->ANAC58          -----   ataaatcgaaccaaaaccggacggcaaaaaagaaagaaaacaaattcatcaatttttttttgtttttcaaacactcaaccataatattcaattgtcaata  4045200                                                              <---------ANAC58                <------                                                              <---------ANAC58           <---------AHL20(2)                                                              <---------ANAC46           <---------YAB1          ------->TEIL                                   <----------DOF2          <---------AHL20(1)     >>>>>>>>>NAM                                     <------ZmHOX2a(1)           <---------AHL20(2) --------->DAG2                              <---------ARR11(3)                   --------->AHL20(2) --------->DOF2                              --------->ARR11(3)               <---------AHL20(2) ---->AHL20(2)                   <---------TOE2(3)---------->DOF2            <---------YAB1 <--------   taaaaagggatgaatttgatatttgaactgtttttaagtttggataagttcttaaaggacttttgggtgaatttcaatttttattttattttttattaaa  4045300                                                                                     --------->ARR11(3)             <---------ANAC55(2)                                          --------->ANAC55(2)  <---------HSFC1(1)                                                      <---------ANAC55(2)  --------->HSFC1(1)            <---------WOX13(1)                        <---------ANAC58  --------->HSFB2a(2)          <------------CBF                 <---------AHL20(2)   <---------ARR11(3)  <---------HSFB2a(2)         --------->ATHB12                 <---------YAB1       ----------->GT1 ---AHL20(2) --------->ANAC58<---------YAB1<-----------GT1  <---------YAB1<---------ANAC58 -YAB1       --------->ANAC58<---------AHL20(2)            <---------GLK1(2)     ---------->DOF2  <--   acttctagaagtatcaagtaaaccatgaaatttgattgggttttttttcagtacaaagaaagattattaatggattacttgataaaaggtatttcagttt  4045400                                <------------CBF                              <---------AHL20(2)                              <---------YAB1                           --------->AHL20(2)                      --------->MYB52(1)                           <---------AHL20(2) <---------ARR11(3)  <---------AHL20(2)                         ------->TEIL         --------->ARR11(3)  <---------ATHB51                 --------->TOE1(3)         --------->AHL20(2)<<<<<<<<<MYB98             ------------>CBF --------->TOE1(3)   <---------TOE2(3)------>ZmHOX2a(2)     ----------->GT1         <---------GLK1(1) --------->TOE2(3)--------->DOF5.7(2)<---------At4g35610   ----------->GT1      <---------HSFB2a(2) ---------GT1    --------->TOE2(3)  <---------AGP1        --------->AHL20(1)    --------->HSFB2a(2)   ttaccttaattttgctaaacgttaatgaattttttattgatctgataaaatctactaaaatatgttaaataatggatttgttttggaaattccaatgcct  4045500                                                      <---------AHL20(2)                                                     --------->AHL20(1)                                                     <---------AHL20(1)                                                    <---------AHL20(2)                                                --------->CCA1(2)                                   <-----------GT1<-----------TBP                               <----------DOF2 --------->ARR11(3)                   <---------ARR14(2)          <---------ARR11(3)   <----------ID1     ----------->GT1   ------>ZmHOX2a(1)   --------->LBD16  --------->ATHB12  ---------->DOF2  --------->ARR14(2)  --------->MYB52(1)  <---------YAB1---------->DOF2   aaaaaaaaggaaataactccaaatccttcaaggcttttaactatccgaagatatatatattttgatttgagagacaaaagacaaggttgagagcgagaga  4045600                                                                                    <---------At4g35610                                                                        ------->GAMYB                      ---------->DOF2                                <---------DOF5.7(2)                    <------ZmHOX2a(2)                                --------->MYB52(1)                   --------->ARR11(3)                               ----------->HVH21                   <---------ARR11(3)  ----------->GT1            <---------At4g35610               -            <---------AtLEC2          <---------ANAC46            --------->At4g35610    <------ZmHOX2a(2)          --------->ANAC58         ----------->HVH21       <---------TOE2(3)  --------->ATHB12 ------          --------->ANAC58      --------->GLK1(2)          <---------YAB1    <---------YAB1----------   gaaaacttgagtaagcatggagatcaaagtgaagactctgacggaaaaacaaatagacattgagattgagctaacggacacgattgagcggatcaaagaa  4045700                                              <---------REM1(2)                     <---------ICU4                                       --------->ARR14(2)                           --------->YAB1                                       <---------ARR11(3)                    --------->DEAR3(1)                                       --------->ARR11(3)                    --------->ANAC46                                       <---------ARR14(2)                    ------->GAMYB                                      <------ZmHOX2a(1)                      --------->RAP2.6(2)                                  ---------->DOF2                           --------->MYB46(3)                          ======================HOX2a_HOX2a                <---------At5g28300      <                          ------>ZmHOX2a(1)   --------->ZAT14             <-----------GT1           < ------>TEIL           =========================HOX2a_HOX2a          --------->ATHB12               - --->MYB52(1)          ------>ZmHOX2a(1) ------>ZmHOX2a(2)          <---------YAB1 <---------ATHB12 - >DOF2   ---------->DOF2----------->RAV1(2)   <---------ZAT14     <---------At4g35610            <<<<   cgaatcgaagagaaagaaggcattcctcctgttcatcaaaggatcgtctacactgggaaacaacttgctgatgatttaaccgccaaacattacaacctag  4045800                                          <-------GAMYB                                         --------->MYB111(1)                                         --------->MYB111(2)                                         --------->MYB55(2)                                         <---------MYB46(3)                                         --------->MYB52(2)           --------->ZAT6                                      --------->MYB55(2)        <---------YAB1       <---------ZAT6                 <---------MYB46(3)   <------MYB83 --------->ALFIN1                    --------->ALFIN1      <---------MYB46(3) -------MYC2                         <---------AtMYB61     ----------->GT1     <------MYB46(1) -------MYC3                <---------------AGL15          <------MYB46(1)     <------MYB83 ------>MYC3               ----------------->AGL1--------->GLK1(2)  --------->YAB1 ------>MYC2           <---------ANAC58 <--------P        --------->MYB59  <---------STY1(2)        < <<<ZML2<---------ZAT18<---------ANAC58<-------GAMYB      <---------AtMYB61--------->STY1(2)     <---   aacgtggtagtgttcttcatcttgttcttgcccttagaggtggttgttgctaatctaggtttggttacaataagactagctaggtttatgtcaattgttt  4045900                                                                                            -------->ZAP1                                                                                         --------->WRKY38(1)                        <----------DOF2                       <----------DOF2          <----------DOF2                       <------------------------ANAC81    <--------P           --------->GLK1(2)                    <----------DOF2                      <---------ANAC58     <---------GLK1(2)          <---------AHL20(2)                             <---------ANAC58   ----------->ARR10         <---------AHL20(2)                        <---------AHL20(2)       <---------YAB1<---------WRKY18(1)         <---------AHL20(1)                <---------ANAC58  <---------ANAC46 --------->ARR14(2)         --------->AHL20(2)                <---------ANAC46  <---------ANAC58 --------->ARR11(3) <<<<<<<<MYB2<-----------GT1               <---------ANAC58  <---------ANAC58 <---------ARR14(2) <--- ------AtMYB61  <----------DOF2      --------->ATHB12   <---------MYB46(3)--------->YAB1 --------->WRKY12   tggttttctaatttttttctttctttcttttcttctgtttgatttgcttatgttatattggttgcttttggttctatgaagattctgaactttgacctag  4046000                                                                                              <------                                                                                              -------                                                                                       --------->ANAC46                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                       --------->YAB1                 --------->ZAT18                                                   --------->AHL20(2)               <---------ZAT14                                                   <---------AHL20(2)               --------->ZAT14                                                  --------->AHL20(2)              <-------MYC3-------        --------->ALFIN1                   <------ZmHOX2a(1)     <---------AHL20(2) <---------ZAT18      <---------ANAC46    <---------YAB1 <---------TOE1(2)       --------->AHL20(2) --------->ZAT18     <------ZmHOX2a(1)    <---------AHL20(2)      <---------ATHB12                ------->MYC3<------ ------ZAT6   <----------DOF2<---------WOX13(1) --------->WOX13(1)          <---------CCA1(2) -------   ttttagaggagtgtttctttattgtgttttaattgaatttttgtaggattcaattaataagaaacatataaatctcacatatcatgtgcacaccaaaatc  4046100  Previous    Next  AGI:  At1g11980.1    Description:  RUB3 (UBIQUITIN-RELATED PROTEIN 3). Identical to NEDD8-like protein RUB3 precursor (RUB3) [Arabidopsis Thaliana] (GB:O65381); similar to RUB1 (RELATED TO UBIQUITIN 1) [Arabidopsis thaliana] (TAIR:AT1G31340.1); similar to unknown [Populus trichocarpa] (GB:ABK94272.1); similar to unknown [Populus trichocarpa] (GB:ABK94447.1); similar to polyubiquitin [Populus tremula x Populus tremuloides] (GB:AAF70460.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 4045617    to: 4045853    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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