Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->TOE2(3)                                  --------->YAB1            --------->YAB1                               ------>MYB83                 <---------ICU4 --------TOE1(2)               ------>MYB46(1)             <---------ATHB12 --------TOE2(2)           >>>>>>>>>MYB2                 --------->WOX13(1)                         - ->YAB1          <---------ATHB12<---------ATHB12 --------->YAB1                         ----------->GT1   atatgtttctgcaatgccaataaacagaaaaccaaatcatcaatttgcagaatcaccatcaatcatcaacttccacatataactatgaacaatgtaaatc  4014300                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                      <---------ANAC58                                                                                      <---------ANAC46                        <---------At4g35610           --------->YAB1                  <---------ANAC58         --------->GLK1(1)                        <---------AHL20(2)             ----------->HVH21         <---------GLK1(1)                        --------->AHL20(2)           --------->ZAT2    ---- <---------AHL20(2)   --------->HSFB2a(2)        --------->AHL20(2)            --------->At4g35610--- -------->YAB1        <---------HSFB2a(2)   <---------ALFIN1              --------->ZAT6  ---------->DOF2   tataaaaatggatttctcagttttcgagatgactacaaaaaaactcacacatttaatcagaaaacttcgtaatcaaacactagctgaagcgtgaaagccc  4014400                                                                                                  ---                                                                                                 ----        --------->MYB52(1)                 <---------HSFB2a(1)                               -------- ----->ANAC58                              <---------HSFC1(2)                               --------- ----->ANAC58                              --------->HSFC1(2)                             --------->At4g35610 ----->LBD16                       <---------MYB46(3)                                     <---------ZAT14 ----->ANAC46         --------->At4g35610  --------->HSFB2a(1)                            --------->ZAT14 ------>LBD16<------ZmHOX2a(2)    <---------ATHB12                                    <----------CDC5   cgaaactaaaaaacgatcaaactcagaagaacagcaatggttcgaaatttcgcatcttcatcgaatcaaacattgatagaagaaactcgctgagcagtaa  4014500                                              <---------HSFB2a(2)                                              --------->HSFB2a(2)                                           --------->ARR14(2)                                      --------->MYB52(1)                                         <--- --------->YAB1                   --------->ANAC58                                               ---- ------>WOX13(1)                  <---------ANAC55(2)                                            <--- ----->MYB46(3)                   --------->ANAC58                                --------->MYB46(3) ->At5g28300                      --------->ANAC46        <---------GLK1(1)     <---------ARR14(2) -->GT1                       ------->TEIL <---------ARR14(2)                   --------->ARR14(2)---   caatcagaaaacaacaacgagagcataacatgaatcacgaaaacggttctggatttttggaattcataccatagaaatgaaggaacctccatagacgggg  4014600           <---------ETT(2)          ============================HOX2a_HOX2a          <------ZmHOX2a(2)        ------->GAMYB       --------->MYB46(3) ------ARR14(2)          --------->At4g35610             ----------->HVH21      *TSS ----->ARR14(2)  --------->bZIP60(2)                 <---------ANAC58         <---------GLK1(1) ------GLK1(2) <---------ALFIN1------>ZmHOX2a(1)     <---------ANAC58 --------->ARR11(3) ------>GLK1(2)--------->AtMYB61               ------>ZmHOX2a(1)      <---------GLK1(2)           <--   attctcttaacgatcgaccacttcatcatcttcctcggtaatctatctcctctctgcttgtgacatttttcagatttttgatttctgagggaattagttt  4014700                                                                                         --------->ANAC58                                                                                         ----------->GT1                                                                                         --------->ANAC58                                                                                        --------->DAG2                                                                                       ---------->DOF2                                                                                    --------->AHL20(2)                                                                  ----------->GT1   <---------AHL20(2)        <-----------GT1                                          <---------TOE2(3) --------->AHL20(2)   <---------YAB1                                          ------------>CBF --------->ANAC58  ------------>CBF           ------------>CBF      --------->TOE2(3)        --------->ANAC58 -------MYB46(3)----------->GT1       <-----------GT1<-----------RAV1(2)    --------->ANAC46    -----   tggttacaattaacacattagttaatatcgagccaatttgaaaccatcttaaacctcagggaccaataagataaatacacgaaaatttaaaaagcaaaat  4014800                                                                          --------->ARR14(2)                                                                  <---------ARR11(3)                         --------->ANAC58                         --------->ARR11(3)                         --------->ANAC58                       --------->HSFC1(2)                  <-----------GT1                               <---------HSFC1(2)               <---------AHL20(2)             *TSS              <---------HSFB2a(1)              <---------AHL20(2)           --------------------->WRI1     <---------ARR14(2)        --------->At4g35610                ------>ZmHOX2a(1)    --------->HSFB2a(1)        <---------At4g35610               --------->TOE2(3)   ---------->DOF2                   <----   ----------->HVH21  ------>ZmHOX2a(1) ------>ZmHOX2a(1)    <------ZmHOX2a(1)   <-------GAMYB  <---- ------>GT1   --------->AHL20(2)   <----------DOF2    ----------->HVH21   <---------GLK1(2)     -----   gttatttgacagcttattaatttcctcacgacttcaactttcctccttagtattttccgacgaggaaagttcttcaaattcgctgttgaattttgtttct  4014900                                                                                                   --                                                                                                   <-                                                                          <-------GAMYB          ----         --------->YAB1                                                  <-----------RAV1(1)    <----        <---------YAB1                                                 <---------At4g35610  <-------GAMYB     --------->ICU4                                               <---------ZAT6           --------->MYB111(2) -----HSFB2a(2)                                             --------->WOX13(1)             <---------MYB46(3) -----LBD16                                   ---------->DOF2   <---------At5g28300       <--------P< ---->HSFB2a(2)         <------ZmHOX2a(2)   <------ZmHOX2a(2) --------->ICU4           <---------TOE2(3)   cggagaaattatcaaaaccctagacgatcacattatcgcttctgagatcaaagacgatgcagcaattactgttcgctgttgttctcttcgaggttgttgt  4015000                                                                      <---------MYB46(3)                                                                      <---------ANAC46                                                                  --------->ALFIN1                                                       ------>ZmHOX2a(2)         <---------MYB46(3)                                 --------->At4g35610   --------->HSFC1(2)----------->HVH21        <----------DOF2          <---------ZAT2        <---------HSFB2a(1)      <---------AtMYB61 ------->ICU4                    <---------At4g35610   --------->HSFB2a(1)     <---------MYB52(1) --------YAB1                 ================================HOX2a_HOX2a--------->WRKY38(1) ----->YAB1                   <------ZmHOX2a(1)--------->ZAT2   <---------ANAC58--------->ALFIN1 -----YAB1            <------NtERF2       <---------ICU4        <---------ANAC58<---------DEAR3(1) ---------ICU4       ------>NtERF2       --------->ICU4<---------HSFC1(2)--------->WRKY12       -----   gataatggcgctttccttcaagacgccgattaggaagctgttgattatgagcttggatcgttccaagcgtggtcgtggaccggtggtgattcagacggtt  4015100                                --------->REM1(2)                                <---------ZAT14    --------->HSFB2a(2)                ------>ZmHOX2a(1)                                --------->ZAT18    <---------HSFB2a(2)       <---------ANAC46       <---------MYB52(1)    <---------ANAC46     ------>ZmHOX2a(2)          ----------->GT1      --------->At5g28300    <---------ANAC58    <------ZmHOX2a(2)         --------->ZAT14      <-------GAMYB          <---------ANAC58   --------->ARR14(2)         <---------ZAT14<---------At4g35610     <---------MYB46(3)  <---------ANAC58       <---------ARR14(2)        <---------ANAC46--------->At4g35610    <---------DEAR3(1)   <---------ANAC58  <---------ANAC46               <---------REM1(1)   <------  ------------>AtMYB77----------->HVH21  --------->ATHB12        ============================HOX2a_HOX2a ----------->HVH21  <---------At4g35610 <---------YAB1           ------>ZmHOX2a(2)<---------ARR14(2) ---->ARR14(2)     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------MYB46(3)   --------->ARR14(2)<   tctgcgacggttattgtgcttctggtgacgagcgtgtacaatatgatggggatccagaagcgttggatcgaagatggtgtagtgaatcctacagatgagg  4015200  Previous    Next  AGI:  At1g11900.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G51965.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G06920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70009.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4013120    to: 4014680    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g11905.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21260.1); contains InterPro domain B-cell receptor-associated 31-like; (InterPro:IPR008417) Range:  from: 4014846    to: 4016538    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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