Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <-----------GT1                             --------->TOE1(2)                                <---------AHL20(1)                           <---------------AtSPL3                             --------->AHL20(1)                           <---------------AtSPL8                   <---------AHL20(2)   <-------MYC3                     ----------->GT1                                <---------YAB1 <-----------GT1                   <---------ANAC58                           <---------AHL20(2)  --------->AHL20(2)                   <---------ANAC58<---------CCA1(1)    <---------ANAC58      --------->AHL20(2)                   <---------ANAC46<---------RVE1(1)    <---------ANAC58      <---------AHL20(2)         <-----------------AGL1   --------->ARR11(3)    <---------ANAC46     --------->AHL20(2) --------------------ANAC81--------------->AtSPL8 --------->ZAT18  --------->AHL20(2)    ------->MYC3   tttttcttctgttctgttttggcctgaaaaatgtacgatattttgccaagagggcattgcttatttcatttttattgaaataaatttaacacatgtaata  4003400                                                                    <------ZmHOX2a(1)                                          --------->LBD16         <---------TOE2(3)                                    <------ZmHOX2a(2)       ------->TEIL<---------ANAC46                     xxxxxxxxxxxxxxxx>smallRNA(s)        ------>ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(s)       ============================HOX2a_HOX2a         --------->YAB1   gtatcagagcccatggttttaatgtgtctcgattgtggatcacccgtggatgtccagtcctgaacgtgaaggatgtgtgttagaaattagaatatgtctc  4003500                                                        --------->ATHB12                                                        --------->YAB1                             <-                                                       <---------YAB1                              --                                                  >>>>>>>>>TBF1                                   <--                                            --------->ALFIN1                --------->WRKY12      ---                                        <------ZmHOX2a(1)      <----------ID1 <---------TOE2(3) -----     ------->TEIL                 <------ZmHOX2a(1)  --------->YAB1         ----------->HVH21--------   tcatatgtatatataagtatgtgaacaagaacaagaggaagaggaagtggaagaagaatgataagaagacgaaggcccttgacgttgttcataagttgta  4003600      <---------ARR14(2)                   <---------ANAC58 --------ICU4                              <---------ANAC46                                <---------ZAT14 ------>HAHB4                ------>ZmHOX2a(1)                                             <---------ZAT18 -------ATHB51        <------------------------ANAC81                         --------->YAB1 ------>ICU4         <---------ANAC58      <---------ANAC58                  <---------YAB1--------->ZAT14 ---->YAB1           <---------ANAC58 <<<<<<<<<TBF1         ----------->RAV1(1)       --------------- --->GT1       <-----------GT1    <---------YAB1 ---------->DOF2           --------->YAB1  --------->ZAT18   ataatgcagaattggattaactttcgtcttcctcttattcttcttccttgtaaaagtttcaacaacataagatagaattatcatacttcatagttcactt  4003700                                                                ------->MYC2                                                                <-------MYC2                                                                -------->ABF1                                                                <-------MYC3                                                                ------->MYC3                                                                <-------PIF5                                                                ------->PIF5                                                                ------->MYC4                                                                <-------MYC4                                                               --------->O2                                                               <---------ANAC55(2)                                                               --------->ANAC46                                                               --------->TGA1a                                                               <---------O2                    ------                                                               --------->ANAC55(2)             ------                                                               <---------TGA1a           <------ZmHOX2a(2)                                                      ===================bZIP_DOF       --------->ARR14(2)     --------->ANAC58        <---------TOE2(3)        ---------->DOF2 --------->ANAC58  <---------ARR14(2)     --------->ANAC46  <---------AHL20(2)  --------->ZAT6     <-----------------------TaNAC69(2)     --------->ANAC58  <---------YAB1     <---------ZAT14  --------->CCA1(2)       --------->MYB52(1) ------>WRI1     ---------->ID1<------ZmHOX2a(1)   --------->YAB1     --------->ANAC58  --------->AGP1   catacatacgcaaaacgttgtcgtttttattgaggagagatgtcaacactgaatcataaagaaacacgtggcaagtcaaaccagttaacagatccaaacg  4003800                                                                                      --------->LBD16                                                                                    <---------LBD16                                                                                  <---------ARR14(2)                                                                                  --------->ARR14(2)                                                                                 --------->HSFC1(2)                                                                                 --------->ZAT2                          --------->At4g35610                                    --------->HSFB2a(1)                  --------->LBD16                                                --------->At4g35610                 --------->ANAC58                                                <---------HSFB2a(1)                 --------->ANAC46                        <---------ANAC58        <---------HSFC1(2)                 --------->ANAC58                        <---------ANAC58       ----------->ARR10                <---------LBD16                         <------NtERF2    <---------At4g35610              --------->ARR14(2)                       <-----------HVH21 --------->At4g35610     --------->AHL20(2)   <---------At4g35610         <---------DEAR3(1) <---------ZAT2 <---------DEAR3(1)     ----------->TBP     ----------->RAV1(1)         <------NtERF2       --------->ZAT2 ----------->HVH21  --------->TOE2(3)    ---------->DOF2             <---------DEAR3(1)  <-----------RAV1(2) --->ANAC58  --------->WOX13(1)              *TSS <------NtERF2      <-----------TGA1<---------DEAR3(1) --->ANAC58------------>CBF     ----------->GT1 <---------DEAR3(1)   <-----------HVH21------>NtERF2   acaacgtttaaatagcaatccgcaaaacagcagaagataaaactaaatcgtcgtcgtcgtcgtgtcttcttcgtcagcagagaagctccggcgatgggtt  4003900                            ------>ZmHOX2a(1)                        <---------ARR14(2)                        --------->ARR14(2)                       <-------GAMYB                       --------->ATERF1(1)                      <---------DEAR3(2)                      --------->ABI4(2)                      <---------ATERF1(1)                      <---------MYB46(3)                     <---------DEAR3(1)                    <------NtERF2                   ------------>AtMYB77                   <---------RAP2.3(1)                  --------->DEAR3(1)                                                            -----                  <---------DEAR3(1)                                                            -----                  <---------RAP2.3(2)                                                          ------                 --------->ZAT2                                                                ------                 <---------At4g35610                     --------->ANAC58                      ------                 <------NtERF2                           --------->ANAC46                     <------                 <---------ZAT2                          --------->ANAC58         <---------TOE1(2)                 --------->At4g35610                  ------>ZmHOX2a(1)           <---------TOE2(2)             --------->ANAC58                        --------->TOE2(3)           --------->STY1(1)             --------->ANAC58            ------>ZmHOX2a(1)                       <---------STY1(1)   tacacaaattgagactcgcagcggcggttcctgtaaccttctcctctcgcctcttcctcaagccatttaccaatactcttaccctaggtttgttttcccg  4004000                                                              <---------ARR11(3)                                                              --------->ARR14(2)                                                       <---------SPL7                                                      --------->DEAR3(1)                                                      <---------ANAC46                                                     --------->RAP2.3(1)                                                     <------NtERF2                                                     --------->ATERF1(1)                                                    ------>NtERF2                                                    --------->ABI4(1)                                                    <---------ATERF1(1)                                                   ------------------>SPL14                                                   --------->RRTF1(2)                                                   --------->RRTF1(3)                                                   --------->ATERF1(2)                                                   --------->RAP2.6(2)                                                   --------->RAP2.3(2)                                                   --------->RAP2.3(3)                                                   --------->DREB2C(2)                                                   <---------DEAR3(1)                                                  --------->RAP2.6(1)                                                  --------->ATERF1(1)                                                  --------->ORA47(2)                                                  --------->RAP2.3(1)                                                  --------->ERF1                                                  --------->DEAR4(2)      <---------ALFIN1                                                  --------->RRTF1(1)    ----------->RAV1(1)                                                 --------->At4g35610   <---------TCP20          ----------->GT1                        <---------At4g35610  ------>NtERF2          <---------ANAC55(2)                    ------>NtERF2<---------ARR14(3)          --------->ANAC46                       <---------ATERF1(1) --------->ANAC46        ------->GAMYB                            --------->LBD16     ------>NtERF2      -------->P                                 <---------RAP2.3(1)<---------RAP2.6(2) ->NtERF2 --------->ANAC55(2)                   --------->ANAC46   <---------LBD16 ---->LBD16                                <---------At4g35610--------->ARR14(3) --->ANAC58                                --------->At4g35610--------->ARR11(3)           ------>ZmHOX2a(1) --->ANAC46                              <---------LBD16      <---------ARR14(2) --------->TOE1(2) --->ANAC58--------->LBD16          <----------DOF2--------->DEAR3(1)--------->LBD16   --------->ARR14(2) ---LBD16<---------LBD16    <-----------HVH21 <---------ATERF1(1)--------->GLK1(2)     <---------ARR14(2)   ccatcttcaaccccgtaataagcctctccttgtcagagctttctccgcttccgccgccgtacaagatattccggccacacagacctccgattcctctggt  4004100                                             <---------At4g35610                                <----------DOF2                    --------->At4g35610           ----                               <---------ANAC58     <---------ANAC58                           <-----       <-----------GT1         <---------ANAC58     <---------ANAC58            <-----------RAV1(1)      <-----------GT1--------->O2         ---------->DOF2 <----------DOF2--------->ANAC58  <------NtERF2     --------->ZAT14 <---------O2  <---------YAB1  --------------->AtSPL8--------->ANAC58  <---------At4g35610   attccagtttaccctctcttacctcgtggcattgcttttgaatgcaaagctgattcgttcctttttagtagcagcaaggcctctgtggaaggcagcgatt  4004200                           --------->At4g35610                                          <---------DAG2                           <---------At4g35610                                          <----------DOF2                        <------ZmHOX2a(1)                                  <---------At4g35610           --------->MYB52(1)                          --------->GLK1(1)   --------->ZAT2    -------- ----->ATHB12         <---------TOE2(3)              <------ZmHOX2a(1)     --------->At4g35610 ----WOX13(1)        --------->YAB1            <------ZmHOX2a(1)           <---------ZAT2   <--------   gatttcaaatggataagggacaataaggaagcagtcgaaatcaacatcaggaacaggaattcgaatgctaatttggaagctgtgctccagctttatgaga  4004300  Previous    Next  AGI:  At1g11860.1    Description:  aminomethyltransferase, putative. Identical to Aminomethyltransferase, mitochondrial precursor (GDCST) [Arabidopsis Thaliana] (GB:O65396;GB:Q42123); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G60990.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G60990.3); similar to aminomethyltransferase [Arabidopsis thaliana] (TAIR:AT1G60990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21220.1); similar to Aminomethyltransferase, mitochondrial precursor (Glycine cleavage system T protein) (GCVT) (GB:O49849); similar to Aminomethyltransferase, mitochondrial precursor (Glycine cleavage system T protein) (GCV Range:  from: 4001279    to: 4003441    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g11870.1    Description:  AtSRS (OVULE ABORTION 7); serine-tRNA ligase. similar to seryl-tRNA synthetase / serine--tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G27470.1); similar to seryl-tRNA synthetase [Zea mays] (GB:CAA73496.1); similar to Os11g0610900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068265.1); similar to unknown [Populus trichocarpa] (GB:ABK95128.1); contains InterPro domain Aminoacyl-tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Seryl-tRNA synthetase, class IIa, N-terminal; (InterPro:IPR015866); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Aminoacyl-tRNA synthetase Range:  from: 4003845    to: 4006737    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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