Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                <----                                                                                                <----                                                                                               ------                                                                                               <-----                                                              <-----------bZIP910(2)           ------                                                             --------->TGA2(2)                 ------                                                            <-----------TGA1                   <-----                                                           --------->bZIP60(1)                -------                                                           --------->bZIP60(2)                -------                                                           --------->ANAC46                   -------                                                           <---------bZIP60(1)                -------                                                           <<<<<<<<<<HY5                     --------                                       --------->ANAC58    <---------TGA2(1)                 --------        ----------->HVH21              --------->ANAC58    <---------O2                     ------>NtERF2      <---------ICU4                ------->GAMYB          --------->TGA2(1)                <--------  <<<<<<<<<TBF1                  --------->MYB52(1)        --------->O2                     --------- ------->ID1                     ----------->RAV1(1)      <-----------STF1              <---------ALFIN1 ----DOF2                     --------->ANAC58           ------>NtERF2     <---------DAG2  --------->ANAC46 -------ANAC81                --------->ANAC58          --------->DEAR3(1) <----------DOF2 --------->DEAR3(1)   gttcttcttcatgacaccttgcgattcagagcaaacaacagaagcaccatcgacctcgacgacgtcatcatccatagctttacgcttgatacaccgccgc  3986900  ---------->DOF2 <------ZmHOX2a(1) ------>At4g35610 --NtERF2 -------RAV1(2) --->LBD16 -NtERF2 >NtERF2                                                             --------->GLK1(1) --->At4g35610                                                       <---------GLK1(1) ----At4g35610                                                    =================================== -->DEAR3(1)                  --------->At4g35610                 =================================== -->RRTF1(2)            <------ZmHOX2a(1)                         ------>ZmHOX2a(1) -->RAP2.3(2)    --------->MYB52(1)                               --------->LBD16 ---->RAV1(1)   ----------->HVH21                             <---------ARR14(2) ->RRTF1(1)    --------->MYB46(3)                             --------->ARR14(2)                ----- ->RAP2.3(1)   --------->DEAR3(2)                       --------->WOX13(1)                     <----- -ATERF1(1)  --------->ARR14(2)                      --------->GLK1(2)                     <------NtERF2 >ABI4(1)    <---------ARR14(2)     <---------MYB52(1)<---------ATHB12                   <---------DEAR3(1)   agaggaaagaaaacagacccgacggaggaatcagcgtcgttactctcgagacccgaatcagtcaaatcctgaaatcccaagagagaagacgttggcgatc  3987000           --------->TGA2(2)           ----------->HVH21          <-----------HVH21          <-----------TGA1         <---------TGA2(1)         --------->TGA2(1)         <---------TGA1a         --------->bZIP60(1)         <---------O2         --------->TGA1a         --------->bZIP60(2)         <---------bZIP60(1)         --------->O2                         <-------TEIL         --------->ANAC46                     --------->ZAT14         --------->ANAC58                 <---------------AtSPL8         ===========================================bZIP_DOF                        --------->ARR14(2)         --------->ANAC58      --------->ANAC55(2)                                --------->LBD16        <-----------STF1       <---------ANAC58                                 --------->HSFB2a(2) ==HOX2a_HOX2a                 <---------ANAC58       --------->AtLEC2          <---------HSFB2a(2) =HOX2a_HOX2a                 ------->TEIL--------->DAG2  --------->ANAC58      <---------LBD16     - ->ZmHOX2a(2)             <---------------AtSPL3 --------->ANAC46      <-------TEIL <---------ARR14(2) -ZmHOX2a(2)           --------->ARR11(3)---------->DOF2  --------->ANAC58  <---------SPL7       ----   gtgttccacagacgtcacagattgagttcttgtacgtgttcaaaaaagtacaggccttgcaagcccatttagcttcatcgttcgcggaaattgagagaga  3987100                                               --------->ANAC58                                               --------->ANAC58                                               --------->AtLEC2                                           --------->ARR11(3)                                           <---------ARR14(2)                                      --------->AtLEC2                                      --------->ANAC58                                   <-----------RAV1(1)                                      --------->ANAC58                                   --------->MYB52(2)         <----------ID1         <------ZmHOX2a(1)                              ---------->DOF2        <------ZmHOX2a(1)       ===================HOX2a_HOX2a                <------ZmHOX2a(1)     <------ZmHOX2a(1)       <-----------RAV1(2)          --------->GLK1(2) <---------TOE2(3) <------ -------->ALFIN1           --------->CCA1(2)<------ZmHOX2a(2)     --------->ANAC58       <---------MYB46(3) ----->DAG2  ---------->DOF2<-------TEIL   <---------ARR11(3)     --------->ANAC58  <-------TEIL <---   aggtggaggaggagacaaagaagggagagatacaggagccaagcagatcatgcaattgagtttctgagacgcagaattgaggaaagtacatttgttgcag  3987200                                                               --------------->AGL15                                                               <---------------AGL15                                                               --------->TOE2(3)                         ----------->HVH21        <---------MYB46(3)         <-----------GT1         ------>NtERF2 ----------->GT1         <---------MYB46(3)   --------------------->WRI1 ---AtLEC2      <---------ANAC58       --------->GLK1(1)      ----------------->AGL2     *TSS <------ ---ZmHOX2a(1)  <---------ANAC58       <---------GLK1(1)     <---------At5g28300     <---------YAB1   gaccaagacgacgacattgctcgacttgtgacaattctcagaaatcggattgttgttgacatttaccctaattagtttttatcgattttgattttttgac  3987300                                    --------->ANAC58                                    --------->ANAC46                             <---------ICU4                             --------->YAB1                            --------->ICU4                     <---------ANAC58                     <---------ANAC46                     <---------ANAC58                     <---------ANAC55(2)                     --------->ANAC55(2)                     --------->O2   --------->ANAC58                                            -----                     <---------ANAC55(1) <---------------------WRI1             --------->AHL20(2)              --------->RAP2.6(3) <-----------GT1                               <---------AHL20(2)---             <-----------GT1<---------YAB1                        ------------>CBF        --------->DAG2 -----GT1    --------->MYB52(1)<---------YAB1       ---------->DOF2     ------------>CBF---------->DOF2   gcttcggttttcatttaacggctacgtgttattattatacgacatcgttttggacaaagaagatggtttacaatttcaatgtttaaatttgaaaggtgaa  3987400                                                                   ----------->RAV1(1)                                                                  <----------ID1                                                          <---------LBD16                         --------->ARR14(2)           <---------MYB46(3)                   ------->GAMYB                      <-----------RAV1(1)                 -------->P                         --------->At4g35610              <---------MYB52(2)                    <---------At4g35610 -->TEIL    <-----------ARR10        --------->HSFB2a(2)<---------MYB52(1)                    <------ ------>TOE2(3) --------->MYB52(1)   <---------HSFB2a(2)--------->ALFIN1                     <------ZmHOX2a(1)   ccgtaatcaaaccgaaactaaccgaagtatacccatataccagaagacagaattagctgttggggaatacaacaaaaacaaaaacatactatttaggaga  3987500               <---------YAB1                                                   --------->At4g35610               --------->AHL20(2)                                        <---------AHL20(2)               <---------AHL20(2)                                       --------->YAB1               --------->AHL20(1)                                       --------->AHL20(2)      <-----------GT1                                                   <---------AHL20(2)   <---------AHL20(2)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------ZAT6  --------->AHL20(2)              --------->ARR11(3)     <-------TEIL   <---------AHL20(1) ----ID1      --------->AHL20(2)  <---------ARR11(3) --------------->AtSPL8     <---------At4g35610   caaattttatacaaaattttattgtcaagagactaaaatctatactagcattttcgaagtacatctcttggcaataaaatttagatgactagttttagtc  3987600                          ------>ZmHOX2a(1)                         --------->TOE2(3)                   ==============HOX2a_HOX2a                  <---------ARR11(3)              <---------ICU4                  --------->ARR11(3)            --------->ARR11(3)        <----------DOF2<------ZmHOX2a(2)        <---------ARR11(3)                                  -    <----------DOF2<------ZmHOX2a(2)       ------->TEIL               <-----------HVH21 <----------DOF2   tattgtctttctttttctaagatcgatcctaaatgtattgacatgaacatgatcatgtctattgcaaaaacctgtcattctatcttcaaactttaagaag  3987700                                                                                             <------ZmHOX2a(1)                                                                                     <---------ARR11(3)                                                                                     --------->ARR14(2)                                                                                  <------MYB83                                                                                  <------MYB46(1)   <                <---------TOE2(2)                                             <---------ANAC46      -               ------>ZmHOX2a(1)                                              <---------REM1(1)  ----    ----------->GT1                                                --------->ARR14(2)<---------ARR14(2)   ----------->GT1                                                 <---------ARR14(2)--------->ARR11(3) -------->ALFIN1<---------TOE1(2)        <-----------GT1     <-----------RAV1(1) --------->MYB59 ----   aagagggggaaaaactcctacgtttaaaatgagtaagtctatttttcaactcggaagaacaaaatgttggatttgcagtgatgtaggtatcttcaggaca  3987800  Previous    Next  AGI:  At1g11800.1    Description:  endonuclease/exonuclease/phosphatase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO21226.1); contains InterPro domain Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) Range:  from: 3985224    to: 3987289    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g11803.1    Description:  pseudogene, auxin responsive protein, blastp match of 74% identity and 1.2e-15 P-value to GP|3043536|dbj|BAA25434.1||AB000708 SAUR {Raphanus sativus} Range:  from: 3987754    to: 3988029    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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