Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <-----------ARR10                                                           --------->HSFB2a(2)        <---------ARR11(3)                                                          <---------HSFB2a(2)        --------->ARR11(3)                                                          <---------HSFC1(1) -------------AGL15                                                                 --------->HSFC1(1) ------------>AGL15                                                                <---------LBD16 ------------->AGL2                                                      ----------->GT1 --------------AGL3                           --------->AHL20(2)        ----------->GT1          <--- ------------->AGL3             <---------ATHB12  --------->YAB1       --------->DAG2           <---- --------------AGL2       --------->TOE2(3)   <---------AHL20(2)      ---------->DOF2          <-----   ctatatatagtatcttagggtttagttttcttaaatcaatagatgttttaaattagaatgaattgatataaaaaaagttaaattttctggaaattttctg  3980800                                                                                                 <---                                                                                        <-----------GT1                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <xxxxxxxxxxxxxxxxx                      --------->MYB52(1)           <---------MYB46(3)           <---------ARR11(3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         --------->ARR11(3)                   --------->ANAC58           <---------TOE2(3)                 <---------ARR14(2)                   --------->ANAC58         ---------->DOF2                <------ZmHOX2a(2)<xxxxxxxx ------MYB52(1)    --------->ANAC46 <---------YAB1 ----------->GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---GAMYB       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------ICU4    --------->ARR14(2) ------RAV1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->MYB52(2)<----------DOF2    xxxxxxxxxxxxx   ttggattggagagaagagaagaagcaacgaagaagatgatgaatgaaaaaggtttgttaaaaaaacattacctttagatcaatatctgattcacaatcca  3980900                                                   <----------ID1                                    <-----------ARR10                                    <---------ARR11(3)                         ----------->GT1                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <-----------HVH21  <----------DOF2 <---------KAN4(1) --------->ARR14(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------MYB52(1)   --------->KAN4(1) <---------ARR14(2)         <---------YAB1 ----------->GT1 xxxxxxsmallRNA(si3) <-----------GT1--------->ARR11(3) *TSS    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxsmallRNA(le3)  <------ZmHOX2a(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ----------->GT1 xxxxxxxxxx>smallRNA(le3)<----------DOF2         --------->MYB52(1)         <------------CBF   ttacctttagaacatatggaatattacctttagatcaatatctgatcaacaaaacgaagaagatgatgagtcatggcaaattggaaaatagggaaataat  3981000                                                           ----------->GT1                                               <---------ANAC46                                               --------->ANAC55(2)                                               <---------ANAC55(2)                                               <---------ANAC58                                               ----------->GT1      --------->TOE2(3)                                               <---------ANAC55(1)  --------->YAB1                                               <---------ANAC58     --------->TOE1(3)             <--                                   <---------ANAC58    <---------AHL20(2)                         ---               --------->ICU4      <---------ANAC58   <---------AHL20(2)  <---------AHL20(2) <-------          ----------->GT1         --------->MYB52(2)  --------->AHL20(2)  --------->AHL20(2) <------- <------ZmHOX2a(1)            <---------MYB46(3)--------->TOE2(3)--------->YAB1 ---------->ID1<------   acaggaatagacttgtaattagttagagtttttggttacttgctgaattacgtaaattatatggttataatcttaattttttgtcgaaatatggctacac  3981100                          <-----------TGA1                                        <---------DEAR3(2)                          <-----------HVH21                                      <---------DEAR3(1)                         --------->ANAC46                                        --------->ETT(1)                        ------->MYC3                                             <---------DREB2C(2)                        <-------MYC3                                             <---------At1g77200                       --------->O2                                              <---------DEAR4(1)                  --------->ARR14(2)                                          <-----------RAV1(1)                  <---------ARR14(2)                                      <----------DOF2       --------->ANAC58--------->ANAC58                                --------->ARR11(3)     -------       --------->ANAC58--------->ANAC46                                <---------ARR11(3)     <------       --------->ANAC46--------->ANAC58                              ------->GAMYB----------->GT1 --- -------At4g35610 --------->ARR11(3)                                --------->MYB46(3)    <---------AHL20(2) ------>At4g35610--------->CCA1(1)             --------->ETT(2)   --------->MYB52(1)      --------->AHL20(1) --REM1(2)       --------->RVE1(1)         <---------YAB1         ----------->RAV1(1)     --------->AHL20(2) --ZAT14     --------->AHL20(2)          <---------AHL20(2)    --------->ANAC46 <---------ORA47(1)--- ---ALFIN1   <---------AHL20(2)         --------->AHL20(2)<----------ID1  <---------DAG2 --------->AHL20(2)   agctaattcacccaaataaatatccacgcgtcatcaaaactatttattgttgacagaaaaaaaacaaacaacagacctttttgtcggtgaaattaattaa  3981200                                       --------->AtLEC2   <---------ANAC58 --------->AHL20(2)             <-----------GT1       <----------DOF2 <---------AHL20(2)             --------->MYB52(1)   <---------DAG2 -->AHL20(2)                  <---------MYB52(2)--------->ALFIN1         <---------ARR14(2)         < ---AHL20(2)                 --------->ANAC58  *TSS------->TEIL          --------->ARR14(2)         - ------>AHL20(2)             --------->ANAC58 --------->ALFIN1           <---------ZAT14        ----- ------>YAB1             ----------->GT1  ---------->DOF2 <---------ANAC58                  <--------   taaaaaaatgatatatgtgtgtatgaaatgtaagtaacgtcttgcaaagtgtggacctttccgtctgagtaagagtattctgagttttgctcttctttga  3981300                                                                        ------->GAMYB                                                                      ------>MYB83                                                                      ------>MYB46(1)          --------->GLK1(1)                                           -------->P          <---------GLK1(1)                                          --------->MYB55(1)      <---------HSFB2a(2)                                           <---------ALFIN1      --------->HSFB2a(2)                 --------->ZAT6            --------->AtMYB61      <---------HSFC1(1)              --------->DOF5.7(2)           <---------MYB111(2)      --------->HSFC1(1)              <---------MYB52(1)            <---------MYB46(2)    ------>MYB83                   ---------->ID1                   --------->MYB46(3)    ------>MYB46(1)            <---------O2                         <---------MYB111(1) ---------ARR11(3)             <---------ANAC58                     <---------MYB55(2)            <-- -------->ARR11(3) <----------DOF2 <---------TOE2(3)                --------->DEAR3(1)           ---- ----->DOF2        <---------DAG2----------->HVH21                 --------->MYB46(3)      <--------- --DOF2--------->LBD16         <---------ANAC58             <----------DOF2  --------->ARR14(2)  ----   aagaccttccagaaatccagactttttgttgtgacttgacgttatctctatgactctccattctttctcaccaaccccatttccccattgagacttttgt  3981400                                                       <-----------ARR10                  <----------               <---------ARR11(3)                      --------->ARR11(3)                 -----------               --------->ARR11(3)                      <---------ARR11(3)                ------------   ------>MYB83<-----------ARR10                      --------->RVE1(1)                  ------------   ------>MYB46(1)                            --------->At4g35610                        <----------- <---------MYB59                              <---------At4g35610                        <----------- -------WRKY18(1)                             ------>ZmHOX2a(1)                          <----------- ----->WRKY38(1)                            <---------ZAT14                             <-----------GT1 -DOF2   ------>ZmHOX2a(1)                  --------->ZAT14      <----------DOF2 <---------ANAC46 ----->WRKY12 <---------GLK1(2)     >>>>>>>>>>GATA-1  --------->CCA1(1)      <----------CDC5   tgacctaattcctccaaaatctcaccttcacattgctcgatttcagtcctctgaaaaaatctccctgctttgctatggctctgaggtgttttcccatttg  3981500   ---------->ID1                                                                                   < -----AGL15                                                          <---------MYB52(1)  --------->ZAT14 ---->AGL15                                                          <------NtERF2       --------->ZAT18 ----->AG                                                           ------>NtERF2 <---------HSFB2a(2) ----->AGL1        <---------ICU4                                   <-----------HVH21    <---------ZAT18 ------AG--------->MYB52(1)                                        --------->DEAR3(1)    <---------ZAT14 ------AGL2       <---------YAB1                                --------->ANAC46  --------->HSFB2a(2) ------AGL1     --------->YAB1------>ZmHOX2a(1)        <---------At4g35610       <---------LBD16    -   ggtttgtccccaaacgactcatcatcgttctcctctcatgggtctcgctgaattcgacgctgataaacgccgtcgtttctgtctctgggagtgctcttct  3981600                                                                  ------>ZmHOX2a(1)               <-----------HVH21                     <---------At4g35610            --------->At4g35610                      --------->ZAT2            <---------ZAT2                           <---------ZAT2  --------->At4g35610  <------ZmHOX2a(1)            --------->ZAT2                       --------->LBD16  <---------At4g35610    <---------At4g35610            <---------At4g35610                  ------>NtERF2  --------->ZAT18          --------->At4g35610 <---------GLK1(2)                       <----------DOF2    --------->DAG2             <-----------RAV1(2) ---------At4g35610                  --------->GLK1(2)     ---------->DOF2    <---------ANAC58 -------->At4g35610                 <---------GLK1(2)--------->At4g35610      <---------ANAC58   tcagcttctcagagagctgtcactgccattgaaggcgagattccttttagccgcgagctcaaaaagtcctctgatgaattgggtttgactcaggagactc  3981700  Previous    Next  AGI:  At1g11785.1    Description:  unknown protein Range:  from: 3979861    to: 3980955    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g11790.1    Description:  ADT1 (AROGENATE DEHYDRATASE 1); arogenate dehydratase/ prephenate dehydratase. similar to ADT2 (AROGENATE DEHYDRATASE 2), arogenate dehydratase/ prephenate dehydratase [Arabidopsis thaliana] (TAIR:AT3G07630.1); similar to ADT2 (AROGENATE DEHYDRATASE 2), prephenate dehydratase [Arabidopsis thaliana] (TAIR:AT3G07630.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO21230.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086) Range:  from: 3981247    to: 3985214    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version