Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <----------DOF2        <------ZmHOX2a(2)       <---------AGP1                                                  --------->YAB1       --------->AGP1                                               <----------DOF2       <---------ARR14(2)                                           ------>ZmHOX2a(1)       --------->ARR11(3)                                         ------>ZmHOX2a(2)       <---------ARR11(3)                                        <------ZmHOX2a(2)       --------->ARR14(2)                                       <---------ARR14(2)      <---------CCA1(2)                                         --------->ARR14(2)    ------>ZmHOX2a(1)               --------->TOE1(2)           --------->ARR14(3) ---------ARR14(2)                  --------->TOE2(3)           <---------ARR14(3) -------->ARR14(2)     --------->MYB46(3)    <---------YAB1     --------->ARR11(3) ------ANAC58          <---------MYB52(2)  ----------->GT1      <---------ARR11(3) ------ANAC58        ----------->RAV1(1) <------------CBF     ----------->ARR10 ---------->DOF2    <- -----CBF------>ZmHOX2a(2)          --------->TOE1(3)    ---------->DOF2------------>CBF          <--   agtatcctagatctttgttttggcaacaaatgactaaaccttagattgttattcaaattcaaagaagatcctttcacaattcaaaagcacagagaaatgg  3967100                                               <---------AHL20(2)                                              --------->AHL20(1)                                              <---------ARR11(3)          --------->AtLEC2   --------                                              <---------AHL20(2)       <---------WRKY38(1) <---------ANAC55(2)                           <-------TEIL       --------->AHL20(2)       <---------WRKY12    <---------TOE2(3)                 ------------>CBF             <---------AHL20(1)    --------->WOX13(1)   <---------AHL20(2)                --------->ANAC58              --------->ARR11(3)--------->YAB1    ----------->GT1    ------->TEIL--------->ANAC58        ----------->GT1      --------->YAB1      --------->DAG2 --------AtLEC2--------->DAG2       <------ZmHOX2a(1)<---------AtLEC2 --------->WRKY18(1)--------->AHL20(2) -----TEIL    ---------->DOF2     <---------------AtSPL8   --------->AHL20(2)  ---------->DOF2   tgcatgaatttgtagataaagcaatgggattcatatgaggaacagaaatatatttgcatcaaaaaataatcagtcaatgcaaaaaggctaattaagtata  3967200                                      <---------ATHB12                                      --------->ICU4                                 --------->ANAC58                                 --------->ANAC58      --------->ICU4                                --------->WOX13(1)     <---------YAB1                              --------->WRKY18(1)    --------->YAB1                           <---------AtMYB61         <---------ICU4                         <---------ANAC46           <---------YAB1                      <-----------RAV1(1)           --------->ICU4                           <-------                    <---------ANAC55(1)           --------->YAB1                        xxxxxxxxxxxxx  <---------ANAC46  --------->ANAC55(2)         ------->TEIL                         <---------ALFIN1 ->YAB1             <---------ANAC55(2)      <---------ATHB12                   --------->AtLEC2   agtgatgtattctatgtgaattaagtgttgtggtcaagcaatgactaatgaatcataatgactaattaagagtttgaacaacatgcacaacctctctttt  3967300                                                          <---------PCF2                                                        <---------ZAT18                                                       --------->ALFIN1                                                   <-------TEIL                  --------->AHL20(1)      <----------DOF2                            --------->ARR14(2)              <---------AHL20(1)  <-----------GT1                  <-----------GT1--------->CCA1(2)      ----------->GT1   ---------- ---DOF2            <---------ARR14(2)           <---------ARR14(2)      <---------YAB1<---------YAB1 xxx>smallRNA(i)    --------->ARR14(2)      --------->MYB52(1)         --------->YAB1  <---------TOE2(3)   tttgtttcctttcacaaatgcaaaaccgtctctaattttacaaaattaacagatacagtgggcctattttgaatcatgttaaaaatattaagtttgtaat  3967400                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                  <--                                                        <---------ZAT2                           <---                                                        ----------->RAV1(2)                      <---                                                        --------->At4g35610                      <---                                                       ------->TEIL                             <----                                                     --------->ZAT14                            -----                                                     --------->ZAT18                            -----                                           --------->HSFB2a(1)              <-----------HVH21<-------                 <---------ARR14(2)      <-----------GT1<---------At4g35610 *TSS             <-------                 --------->ARR14(2)<<<<<<<<<<MYB80   <---------ZAT14 <---------PCF2     <-------GAMYB            --------->ATHB12      <------MYB83  <---------YAB1    --------->HSFB2a(2)   <---------At4g35610     <------------CBF             <------MYB46(1)    <---------ZAT18----------->HVH21  <-----------RAV1(1) ->GT1      --------->YAB1  <---------YAB1 <---------HSFB2a(1)   <---------LBD16 <-----------RAV1(1)<   ttgggcttattgaatcatggatttgggcttataatttggtttgaaaccttctgagtgcacctgagtctctgggacctgtgtcactgttgctgttgccttg  3967500      ----------->GT1      <------MYB46(1)      <------MYB83     --------->MYB59    <-------TEIL <------MYB83 <---------ANAC58 <------MYB46(1) <---------ANAC58 -------->MYB59 ------MYB83 ------MYB46(1)                                       <-----------HVH21     --------->ANAC46 ------P                                           --------->At4g35610   ------->TEIL           <---- ------ANAC58                                  ------>NtERF2       ------>NtERF2                <---- ------ANAC58                                  <---------SPL7     --------->ANAC46              ----- ----GAMYB       <---------ANAC58              <---------RAP2.6(3)--------->ANAC58              ----- -----MYB46(3)   <---------ANAC58             <---------ANAC58    --------->ANAC58         --------->ZAT2 ---->MYB55(2)   --------->MYB52(2)      <---------ANAC58 <---------At4g35610              <---------ZAT2 ---->ATHB12    <-------TEIL             <---------ANAC58 --------->At4g35610--------->LBD16   ------ --ANAC58   <---------TOE2(3)     --------->TOE1(3)------>ZmHOX2a(1)----------->RAV1(2)    <---------At4g35610 --ANAC58  ---------->DOF2        --------->TOE2(3)<---------At4g35610----------->HVH21    --------->At4g35610 ---------MYB46(3)       --------->MYB52(1)   <---------ANAC58  <---------ALFIN1        ---------->DOF2   gttgggttcggtttaaagttcgtggccaaacagtaaccttgagtcttgccgtcctctgtcatctatccacgcctgaacccgaaaaactctgaaagctgag  3967600         <---------ANAC46         <---------ANAC58         <---------ANAC58                                        --------->TOE1(3)        <---------LBD16                                          --------->TOE2(3) -----ZAT2 <------NtERF2                            <---------HSFB2a(2) -----At4g35610                ------>ZmHOX2a(1)    <---------HSFC1(1)    ------>MYB46(1)       ----- ---->ZAT2--------->LBD16  <---------ALFIN1         --------->HSFB2a(2)   ------>MYB83        <------ ---->At4g35610           <---------At4g35610       --------->HSFC1(1)   <---------ALFIN1     <<<<<<< ----->ARR10            <-----------GT1<----------DOF2     --------->ANAC46     <----------DOF2------   ctctggtaatggcgggtttagcaatttcacctcctctcggtctttccttctcttctcgaactcgaaaccctaaacccacttcctttctatctcacaatca  3967700                                                     --------->TOE2(3)                                                     --------->TOE1(3)                                               --------->At4g35610                              <---------ALFIN1 <---------At4g35610                       --------->WOX13(1)     <---------YAB1                    --------->ANAC58     --------->YAB1                --------->ATHB12 ----->DOF2         --------->ANAC46     -------->HAHB4               <---------YAB1           <----- ---ATHB12          --------->ANAC58    --------->ICU4            ------->TEIL                 <----- <<ARR2    <---------DAG2<---------ATHB12<---------ICU4        <---------YAB1           ------>ZmHOX2a(1) --->YAB1  <----------DOF2--------->YAB1<---------ATHB12    <---------AHL20(2)    <------ZmHOX2a(1)   aaggtactactaacttttctaaacgcaatcacacactctcaaatgattatgctgaccttaaatttatgaattttgatttgtgtaggaatcctataagacg  3967800                                           ----------->GT1                                        <---------At4g35610                                        <---------ZAT2        <---------ANAC58                                     ---------->DOF2          <---------ANAC58                                   ----------->HVH21    --------->ATHB12                              --------->GLK1(2)    --------->AHL20(2)            --------->ZAT14  <---------ARR14(2)  --------->TOE1(3)         <----------DOF2     --------->ARR14(2)  --------->TOE2(3)  <---------At4g35610 ----ANAC46 <---------ZAT14  <---------GLK1(2)   <----------DOF2 <---------At4g35610            <---- ----ANAC55(2)             ----------->ARR10 <--------P<---------ATHB12         ---------->DOF2 <----   tatagtttctgctctacagagtccatatggagattctctgaaagctggtaactttaaatcatttgcttgctgctactagctctaaagcatttgggtttta  3967900                                                                --------->ATHB12                                                          <---------WOX13(1)                                   <----------DOF2     --------->LBD16                               <---------At4g35610    --------->HSFB2a(2)                         <---------ANAC58            <---------LBD16                         <-------         <-----------RAV1(1)<---------At4g35610    <---------ARR14(2)                  <---------ANAC46     <---------AHL20(2)  <---------ANAC46          --------->ARR14(2)                  <---------YAB1     --------->AHL20(2)  <---------ANAC58          --------->GLK1(2)               <-------GAMYB -----TOE2(3)        <---------At4g35610 <---------At4g35610  <---------WOX13(1)   <---------ANAC58 -----TOE1(3)        --------->At4g35610 --------->At4g35610--------->ATHB12       <---------ANAC58   ggtttttttaaatgttggaattaagctgcttgctgctctttgatgctgaagagtttccggattgattgattcgtttctgagattgggttgtgtttgatgt  3968000  Previous    Next  AGI:  At1g11750.1    Description:  CLPP6 (Clp protease proteolytic subunit 6); endopeptidase Clp. Identical to ATP-dependent Clp protease proteolytic subunit 6, chloroplast precursor (CLPP6) [Arabidopsis Thaliana] (GB:Q9SAA2;GB:O48891); similar to CLPP5 (NUCLEAR ENCODED CLP PROTEASE 1), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G02560.1); similar to unknown [Populus trichocarpa] (GB:ABK94496.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) Range:  from: 3967476    to: 3969854    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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