Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                ---------->DOF2           --------->ANAC58             <----------DOF2    ---------->DOF2                     <---------DAG2                             <-----------GT1  --------->YAB1                  --------------->AtSPL8                      <---------DAG2     ---- ------->WOX13(1)                <---------MYB52(1)                           <----------DOF2 <------ -------AHL20(2)          --------->ANAC46                              --------------->AtSPL8<------ ----->AHL20(2)    XXXXXXXXXXXXXXXXXXXX>MIR416                          <---------------AtSPL8------- --YAB1    --------->ANAC58 <---------ALFIN1                            <---------ICU4        -------   taaatcaaaagttaagcaaagtttatacacacactgttagtacttttctcacattgttccagtttctaactaaattagtactttttcacaattccaaatc  3957100                   <---------MYB59               --------->ZAT2                  --------->ANAC58          ------>ZmHOX2a(2)             --------->ZAT6                --------->CCA1(2)     --------->ARR14(2)                    <------ZmHOX2a(2)     <---------ARR14(2)   <----------DOF2 --------->ARR14(2)   --------->LBD16--------->ANAC55(1)     <---------ARR14(2)<--------HAHB4  --------->ANAC58--------->ANAC55(2)     <---------ARR11(3)<---------ICU4  --------->ANAC58--------->ANAC46        --------->AGP1   <---------YAB1 <---------LBD16  --------->ANAC58--------->LBD16<---------ZAT2   --------->TOE2(3)            ------ ------->HVH21    <---------ANAC55(2)     --------->ARR11(3)--------->YAB1                     ------ ---ARR14(2) <---------------AtSPL3       <---------AGP1   --------->ICU4                    <------- -----ARR10  --------------->AtSPL3<---------MYB52(1)    --------->YAB1                      <------- -->GLK1(2) <---------ZAT14      --------->ANAC46<---------At4g35610             --------->YAB1<----- -->ARR14(2)--------->ZAT14     <---------LBD16  --------->At4g35610          --------->YAB1 --------   tgacccggaaacagaacagtacgtaactcttttctccggtactagatctgcagctgcagttatcattacattagtagcaaaaatcatcagtttaaaatat  3957200                                  <------------CBF                                 <---------ICU4                                 --------->ATHB12                            <-----------TGA1                           --------->bZIP60(2) --->AHL20(1)              --------->ANAC58               ------>MYB46(1)             --------->WOX13(1) --->AHL20(2)              --------->ANAC58             <---------MYB46(2)          ------------>CBF --AHL20(2) --------->ARR11(3)   --------->ATHB51       <---------MYB59     ---------->DOF2 --AHL20(1) --------->GLK1(2)   <---------YAB1         ----------------->AGL1--------->DAG2       <-- ----AHL20(1)      --------->GLK1(2)   --------->ARR14(2) ------>MYB83   <---------AHL20(2)   <------MYB46(1) ->AHL20(1) <---------ARR11(3)  --------->ICU4      --------->DOF5.7(2)  ----------->TBP      <------MYB83   tttagtaacttcaaaatctataatctgaaacgtcattattgtatatgccaaaacgttaccaaacttgtaagttatataaaaagtgattcaattagtgggt  3957300                                                     <---------ZAT6                                                     ----------->GT1                                                    <-----------------AGL3                                                    =================================================                                               <---------------AtSPL8                                               <---------------AtSPL3                                               --------->DAG2                                         <---------ZAT14                                         --------->At4g35610                                         --------->ZAT18                                       --------->ZAT18                                       <---------ZAT14                           ------->TEIL              --------->LBD16         --------->ALFIN1--------->At5g28300       <---------CCA1(2)            <---------LBD16   ---------->DOF2 ---------->DOF2           ---------->DOF2 -------MYB46(3)        --------->ALFIN1 --------->ZAT14         ----------->RAV1(1)                <   ttgttctctcttcatgcggagagagagtgggagaaagagagtgtgcagaaaagtactgtaaatagacccacaaaaaaagcttgaatcttttgacttccaa  3957400                                   <----------DOF2                      <---------WRKY18(1)                     --------->WRKY45                     --------->WRKY12                     --------->WRKY38(1)                   <------------CBF--------------->AGL15       <---------ARR14(2)     --------->ARR11(3)            <---------DAG2     ------>ZmHOX2a(1)     <---------ARR11(3)            <---------------AGL15       --------->ARR14(2) ==================================================MADS_MADS  ------>MYB46(1)           <------ZmHOX2a(1) -----------GT1   <---------AtLEC2<-----------------AGL3      ------>MYB83--------->WOX13(1)   <-----   attaacaaatctttgattttgcattgaccattctctgctttttttggatttgagtcctgaaaccaaatccaaatgtcattcaagaacagaggagattaca  3957500                                                                             ========================                                                                             <---------------AGL15                                                                      --------->KAN4(2)                                                                     --------->HSFC1(2)                                                                     <---------KAN4(1)                                                                     <---------HSFB2a(1)                      <---------HSFC1(1)                             --------->HSFB2a(1)                      --------->HSFB2a(2)           <---------TOE1(2)<---------HSFC1(2)        --------->ANAC46                         --------->ANAC58    --------->KAN4(1)        --------->ANAC58                         --------->ANAC58   <---------KAN4(2)  >>>>>>>>>GT-1        --------->ANAC58 <---------GLK1(2)   ------->TEIL     <---------ANAC58      ----------->GT1 <-----------GT1      <---------HSFB2a(2)  ------->MYC3       <---------ANAC58  --------->MYB52(1) ----YAB1             --------->HSFC1(1)   <-------MYC3       <---------ANAC46 ----------->HVH21 <---   attttactccaagaaatgtagtttctagaaactctgtatttttcatgtgcctcgcaagtttctgccttggaatgttcttcactaacaggtaaatctatta  3957600                                               <---------ARR11(3)                                               --------->ARR11(3)                                              <---------CCA1(2)                                              <---------GLK1(1)                                     <---------TOE2(3)           <---------YAB1           ---------->DOF2                                    --------->HSFB2a(2)           <---------AHL20(2)     <---------YAB1                                       <---------HSFB2a(2)          --------->AHL20(2)   --------------->AGL15                                  <---------LBD16      <---------ALFIN1         <---------------AGL15      <---------ANAC58         <----------DOF2 ==============================================MADS_MADS  <---------ANAC58   <----------DOF2 ------ANAC55(2) <---------YAB1<---------YAB1 --------->GLK1(1)          <---------GLK1(2)       ----   catgagccccatttttattatgttcgacgatttcttattaaagtttggatatctcactgttcgtgtttgattctagcttctttttctttctggattttta  3957700                                                                                           <---------DEAR3(2)                                                                                          --------->ETT(1)                                                                                          <---------At1g77200                                                                                          <---------DREB2C(2)                                                                                          <---------DEAR4(1)                                                                                          <---------DEAR3(1)      ---------->ID1                                                                     <---------ORA47(1)    <-----------RAV1(1)                                                       <----------DOF2-------- ----->ANAC55(2)                    ------->TEIL                    <---------GLK1(1)  <-----------RAV1(1)   agtattttgttgtttctaatttcatcttcttgggactgaatctatcttgtgtttctcaaaatttaagtagatttcttaagctttgagttttgtcggtgaa  3957800                                                                                           <---------ARR11(3)                                                          <------ZmHOX2a(1)                --------->ARR11(3)                                                 <----------DOF2            --------->ANAC46                                             ---------->ID1                 --------->ANAC58                    --------->ZAT6           <---------CCA1(2)              --------->ANAC58 --->HVH21     <-----------GT1            ------>ZmHOX2a(1)  <------ZmHOX2a(1)            <---------CCA1(2)   ggcatgtttttgttttttatcaagactactggtctatttgtgtccttgtagctttagtgaggaggaatcaagagacacacacaaaaaaaactatatctta  3957900                                                                      <----------DOF2                                               ---------->ID1        <---------ANAC58                                          <----------DOF2            <---------ANAC58                                       <-----------GT1           <----------DOF2                 ----                                    ----------->GT1        --------->WOX13(1)------->TEIL <------ZmHOX2a(1)   tactgcttatcagatagatttgatcaaatagtggaacattgtaacttttgtagtatttgatcaatctctttgcttaatgtatcgtcggaagaggaacaat  3958000  Previous    Next  AGI:  At1g11720.1    Description:  ATSS3 (STARCH SYNTHASE 3); starch synthase/ transferase, transferring glycosyl groups. similar to ATSS4/SSIV (STARCH SYNTHASE 4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G18240.1); similar to Soluble starch synthase 3, chloroplast precursor (SS III) (Soluble starch synthase III) (GB:Q43846); similar to unnamed protein product [Vitis vinifera] (GB:CAO17942.1); similar to soluble-starch-synthase [Solanum tuberosum] (GB:CAA64173.1); contains InterPro domain Starch synthase III (InterPro:IPR009756); contains InterPro domain Starch synthase catalytic region (InterPro:IPR013534); contains InterPro domain Glycogen/s Range:  from: 3952511    to: 3957044    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g11730.1    Description:  galactosyltransferase family protein. similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G05170.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO23998.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) Range:  from: 3957473    to: 3960113    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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