Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <------ZmHOX2a(1)  <----------DOF2               <----------ID1 ---AHL20(2)                 ---------->DOF2                                                   ------ ---YAB1                    <---------ATHB12                                                   ------ ->AHL20(1)            ------>ZmHOX2a(1)                                 ----------->GT1    --------- ->AHL20(2)     --------->AHL20(2)                            <---------MYB46(3)          <--------P --AHL20(1)     --------->AHL20(1)                           <--------P <---------------AtSPL8 <----- --AHL20(2)     <---------AHL20(1)       ---------->DOF2  <---------AtMYB61            <---------TOE2(3)   ttgtctttttgtgaaaaatataatcctgcaataaaggacaaatgaaagcatgtaagtcttgtggtagttcaaatatggtactatgtgatgaggttagtgg  3948300                                                                                                   --                                                                                                  ---                                                                                        ------>ZmHOX2a(1)                                                                                        =============                                                                 <---------ANAC46      <---------MYB59                                                     <---------ARR14(2)                <-------------                                                     --------->ARR14(2)                --------------                               <-------TEIL          --------->ARR11(3)      <------ZmHOX2a(2)<------    --------->ZAT6        <---------WOX13(1)         ------->TEIL<---------ANAC55(2)  --------------- <----------DOF2        --------->ATHB12      <---------LBD16    --------->ANAC55(2)  --------------- --->ZAT18             --------->ICU4        <---------At5g28300 <---------ANAC58     <-------------- --->ZAT14             <---------YAB1       <-----------GT1      <---------ANAC58     --------------- >MYB52(2)          <---------YAB1     <---------YAB1<---------ARR11(3)      ======================== ----ZAT18        --------->YAB1    <----------DOF2 <---------CCA1(2)        ==================HOX2a_HOX2a   acactttcactaaaaaacaattttgatgattgatacatcttttgattcaccggtgtatcttcagattgcgtaaacttcgatccaaaattcctaattaaga  3948400     <---------ARR14(2)     --------->ARR14(2)    <------ZmHOX2a(1) ------->DAG2                                                                   --------->ATHB12 ------->DOF2                                                                   -------->HAHB4 =============HOX2a_HOX2a                                                       <---------ICU4 --AGL15                                                                       <---------ATHB12 ->AGL15                                                                       --------->ICU4     --- ---TOE2(3)                                                                    <---------YAB1   ----- -->AG                                 --------->ANAC46                       <---------TOE2(3) <---- -->AGL1                               --------->ANAC55(2)                   --------->YAB1     <---- ---AG ------>ZmHOX2a(2)             <-----------GT1                         <---------ICU4     <---- -->AGL3                    --------->KAN4(2)                          <---------At4g35610 <--------- ==========HOX2a_HOX2a     <----------TaMYB80<----------DOF2    --------->ATHB12--------->YAB1 <-----   aaaagaggatcggaataactaaaccttgcatattccatttcacataactttgcgaaacaagtgatttcattgctgctactaatgatggctcaacaagtac  3948500                             <---------ANAC55(2)                       --------->ANAC58                             --------->ANAC58                          <------NtERF2                             --------->ANAC58                         --------->ZAT18                             --------->ANAC55(1)                      <---------ZAT18 -------->HVH21              --------->ANAC46                         ------>NtERF2 ---->ANAC55(2)              --------->ANAC55(2)          <---------MYB46(3) -----ANAC58              <---------ARR14(2)           <---------ANAC46--------->ANAC58        ------ -----ANAC55(2)           --------->ARR14(2)          <---------DEAR3(1)                  ------>MYB83 -----ANAC58     <-----------GT1               <---------YAB1 <-----------HVH21           ------>MYB46(1) ------AtSPL3    --------->ZAT6               --------->AHL20(2)     <---------RAP2.6(2)<---------MYB59 --TEIL  --------->ANAC55(2)<-------TEIL   --------->YAB1--------->ALFIN1              --------->ANAC46   gtgactagtttaagtgatttcactactggatacgtaatgggctcataatattatagggggtggatgtcatggcgcccaattggacttagacccaacttcg  3948600                                                        ------>ZmHOX2a(1)  <------MYB83                        <-----------GT1          <---------MYB52(1)        <---------ANAC58                  --------->AHL20(2)           ----------->GT1             <------MYB46(1)          <               --------->TOE2(3)       <-----------------AG                <---------ANAC58        <-               --------->TOE1(3)  --------->ANAC46     --------->TOE1(3)   <---------ANAC46    <-----     <---------YAB1   --------->YAB1   ------------>CBF--------->TOE2(3)  --------->MYB59    -------- ----->GT1---------->DOF2        --------->LBD16<-------GAMYB      ------>ZmHOX2a(1)    <----------DOF2   taaaactatgctaaaagccttaaattatactatccctcgaaaccaatttcggttaatccttaaccggtcctctagttgggtatttaagcccttttgtctt  3948700                                --------->At4g35610                            <-----------HVH21                            <---------ATERF1(1)                            <-----------TGA1                            ------>NtERF2                           <---------ATERF1(2)                           --------->RAP2.3(3)                           --------->DEAR3(1)                           --------->RAP2.6(2)                           --------->ANAC46                          <------NtERF2                          --------->ATERF1(1)                          --------->RAP2.3(1)                         <---------ATERF1(1)                         ------>NtERF2                        <---------DEAR3(1)                        --------->DEAR3(1)                      ------>NtERF2                      <---------ATERF1(1)                      <-----------HVH21                     --------->O2                     --------->RAP2.3(2)                     --------->DEAR3(1)                     <---------O2                    --------->RRTF1(1)                    --------->DEAR4(2)                    --------->ERF1                    --------->RAP2.3(1)                    <------NtERF2                   ------>NtERF2<---------At4g35610                   <---------ATERF1(1)                  <---------ATERF1(2)                  --------->DEAR3(1)                  --------->RAP2.3(2)                  --------->RAP2.6(2)                 --------->RAP2.3(1)                 --------->ATERF1(1)                <---------At4g35610                --------->At4g35610                <---------ATERF1(1)                               <---------ANAC58      --------->YAB1     <---------MYB52(1)--------->ATERF1(1)                        <---------ANAC58      <---------ICU4  <------------MYB.PH3(1)<---------RAP2.3(1)                     <---------STY1(2)     <------ZmHOX2a(2) <---------At5g28300--------->ATERF1(1)                     --------->ANAC46       --------->SPL7 -----------GT1 ------>NtERF2<------NtERF2                  --------->ANAC58       <---------TOE1(2) ----------GT1 <-----------RAV1(1)                          --------->ANAC58     <---------SPL7 -----DOF2    *TSS--------->ATERF1(2)              <---------ANAC58           ------->TEIL -->ID1 <-----------GT1<------NtERF2<---------ZAT6 <---------ANAC58     <-------TEIL  --------->ARR11(3)   tttaaccgtttttctctctgccgccgtcgccgtcaccagagttactcatcgtggtttgtcaaacgctagcgaggctcatgtatcggacgatcatgccttc  3948800                                                                                        <------MYB46(1)                                                               <---------TOE2(3)       --------->MYB59                                                               <---------TOE1(3) <---------MYB52(1)                                                           --------->At4g35610 <---------ANAC46                                                       --------->TOE2(3)       <---------ANAC58                                                     <---------TOE2(3)       ------->TEIL<-----------HVH21                                                     ---------->ID1        --------->REM1(2)                                         <----------DOF2   <---------At4g35610 <---------ANAC58              --------->ARR11(3)        <---------ANAC58--------->DOF5.7(2)<---------ZAT14   <-------              <---------ARR11(3)        <---------ANAC58<---------MYB52(1) --------->ZAT14   --------          ---------->DOF2          --------->ALFIN1  <---------TOE1(3)  <---------ANAC46<------MYB83   gaattctacgtttaaagacctctgtctagatttaggggttttgcttctagggtttatcgttatctgaggtttttctgtgtaccgtatgttcggtcacgtt  3948900                                                                       <---------CCA1(1)                                                                       <---------RVE1(1)                                                                      <---------ARR14(3)                                                                      --------->ARR14(3)                              <----------DOF2                         <---------ARR14(2)                             <---------ANAC58                         --------->ARR14(2)                             <---------ANAC46                       ----------->ARR10                          <---------MYB52(1)                      <------NtERF2                        --------->MYB52(2)                     <---------LBD16                   ------>ZmHOX2a(1)                       ------>ZmHOX2a(1)        <---------ZAT14   --------->LBD16 --------->LBD16 --------->O2          ----------->RAV1(2)        <---------ZAT18  --------->HSFB2a(2)  <-------TEIL<---------O2        --------->ARR14(2)           --------->ZAT14  <---------HSFB2a(2)  --------->SPL7                  <---------ARR14(2)     <----------DOF2 <---------LBD16 ----------->RAV1(2)               --------->HSFB2a(2)--------->ARR11(3) --ANAC55(2) --------->At4g35610   --------->ANAC46<---------HSFB2a(2)<---------ARR11(3) ->ANAC55(2) --------->ZAT2  <---------ANAC58   --------->GLK1(2)--------->LBD16    --------->ZAT18   ttctccagaagaacgagcttcctggtacgttgctttcacgttgctaagaaattctcgaatcctgagccggaagatattctctttagtgctctctgtttga  3949000                                                   <---------ARR14(2)                                                   --------->ARR14(2)                        --------                                                  --------->GLK1(1)  --------->ARR11(3)<---------ZAT2                                                  <---------GLK1(1)  <---------ARR11(3)--------->ZAT2                   <---------ALFIN1   ------>ZmHOX2a(1) <---------MYB52(1) --------->HSFB2a(2)      -   atttaagacagagaagatggaacactcttcatcaattctcctcgagtctcacaaatccgttgataagtcgagttcttcgcgagtttcgaagctcgccgaa  3949100                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                    <-------TEIL-----                                                                                --------->ICU4  <----                                                                                <---------YAB1 <-----            <-----------------AGL3                                         <---------ANAC58   <------  --------->ZAT6               ----------->GT1                             <---------ANAC46  <------- <---------At4g35610          <------ZmHOX2a(1)                    --------->HSFC1(2)        -------- --------->At4g35610        <---------TOE2(3)                      <---------HSFC1(2)--------->ATHB12 ->DEAR3(1) <-----------------AGL2  --------->ZAT6      --------->GLK1(2)  <---------ANAC58<---------ANAC58 -------->MYB59         <----------DOF2<-----------RAV1(1)         --------->HSFB2a(1)     <---------ANAC58   gttagctctagagttctacaattgggttttaaggagtaacactgtggctaagtctgagaatcgattcgaagcctcttgtgtgatgattcatttgctggtt  3949200  Previous    Next  AGI:  At1g11710.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G01110.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63985.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 3948714    to: 3951359    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version