Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         xxxxxxxxxxxxxx                                 <-------TEIL                                          xxxxxxxxxxxxxx                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  --------->ANAC58                              <------MYB46(1)                                         --------->ANAC55(1)                              <------MYB83                                            --------->ANAC58                             --------->MYB111(1)               --------->YAB1         --------->ANAC46                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                             <---------------AtSPL8            <--------ATHB1         <xxxxxxxxxxxxxx                             --------->MYB59                   <---------ICU4       <---------ALFIN1                         --------->ATHB12                      --------->ATHB51   xxxxxxxxxxxxxxxxxxx                         <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <--                        --------->AHL20(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxx                        <---------AHL20(2)      --------->HSFB2a(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ATHB51   ------>ZmHOX2a(1)<--                       <---------------AGL15    <---------HSFB2a(2)   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxx                    <---------AHL20(2)     <----------DOF2    --------->ICU4 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   aaaaaaaaaacctagagttttttttatttattaggtacatattgtcttttctagtactaaaacaataatggctaagtctcatcctcacacgcaagagatt  3892200          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->AHL20(2)         <---------AHL20(2)         --------->ARR11(3)         --------->AHL20(1)         <---------ARR11(3)         <---------AHL20(1)       --------->GLK1(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(si3)                                                        <---------------AGL15 xxxxxxxxx>smallRNA(l2)                                                         --------------->AGL15 xxsmallRNA(i)                                                                 ----------------->AGL1 xxx>smallRNA(fl3)                                                             ----------------->AGL3 -------TOE2(3)                                                        <---------AHL20(2) xxxxxxxxxxxx>smallRNA(si3)          <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ANAC55(2)      <---------ZAT14 -------TOE1(3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ANAC55(2)      <-------TEIL xxxxxsmallRNA(i2)         --------->YAB1                       <-------TEIL <-----------GT1   aaggttgagaatatattgtattgttgttagcataaactaaaatggatgaaaccaatttctatcaaatacatattttttttagccatttagagtacattgg  3892300                                                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                             <----------DOF2                                                                        <---------DAG2                                                                        <----------DOF2                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     ----------->GT1 <---------ALFIN1                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       xxxxxx                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxxxxxxxxxx>smallRNA(i)-----                   <-----------GT1           <----------DOF2   --------------->AtSPL8  <----------DOF2   aaaacaagtatttcaactaaattactctaagacaatttttcttcaatcttttatgagataaaaattttggaccacttttcttttctgttctttgtggata  3892400          --------->ZAT14      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ------>MYB83                                         ------>ZmHOX2a(2)               <---------      ------>MYB46(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            <---------ARR11(3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <<<<<<<<<RAP2.2---------->DOF2      --------->ARR11(3)    <---------MYB59--------->YAB1     --------->ZAT14    <---------ARR11(3)         <---------ICU4 xxxxxxxxxxxxxxxx>smallRNA(se3)       <---------ZAT14 <---------WOX13(1)           --------->ICU4 ---->YAB1<---------ZAT14       <-----------GT1    <---------TOE2(3)         <-----------GT1   ataaaaccaaacttcactgaattatagcttcaattcacattgtactgaatttttagattgatctcaaaataaagttttttttctaaatattatcttttat  3892500                                                                                             --------                        --------->ATHB12                                                     --------                 --------->At5g28300                                                         <-------                ----------->GT1                                                       --------->ARR11(3)            ---------->DOF2                                                           <---------ARR11(3)           <---------AHL20(2)           <----------DOF2                              --------->YAB1           --------->AHL20(2)          <---------ANAC58               ------>ZmHOX2a(1)    <---------AHL20(1)       <---------AHL20(2)              <---------ANAC58          <---------ALFIN1   <---------YAB1 --       <---------AHL20(1)          <----------DOF2       <---------ALFIN1           <---------TOE1(3)       --------->AHL20(1)         <---------ANAC58      --------->MYB46(3)      *TSS<---------TOE2(3)  ------------>CBF  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->AtMYB61 --------->YAB1  --------->AHL20(1) -DOF2 --------->AHL20(2)         <---------ANAC58    --------->AtMYB61 <----------DOF2 --------->AHL20(2)   cgaatacaattaattaaagggtaaattgattaagttgctttgctttgtatataagaccaccatcgctccatcctctttcatcagttaagataatatatat  3892600                                        <---------TOE2(3)                                        <---------TOE1(3)                                       <---------DOF5.7(2)                                       ---------->DOF2              <<<<<<<<<<<<<<<<<LFY    --------->ICU4                  <-------GAMYB               <---------YAB1        <---------ZAT6 ->ARR11(3)                        <------MYB83              ------>ZmHOX2a(1)  --------->ATHB12 ->AHL20(1)                        <---------MYB46(3)       --------->TOE2(3) <-------GAMYB --ARR11(3)                        <------MYB46(1)    <-----------GT1        <---------MYB46(3) --------->GT1----------->GT1  <-----------RAV1(1)<----------DOF2--------->YAB1<---------YAB1--------   tcagtaattaagagagaagaaataaacacaaaaatgttggttaaagttttctcttttttcatccttatgataacaatggtggttattggtgttagcaaag  3892700                                                          <-----------HVH21                                                          <-----------TGA1                                                  <------NtERF2                                                <---------ANAC58                                                <---------ANAC46                                                <---------ANAC58                                               <---------LBD16                                        <---------At4g35610                            --------->ATHB12                             <----------DOF2 --------->DAG2                  <---------O2     -------                <-----------HVH21       --------->At4g35610                  --------->ANAC46<-------    <---------YAB1           <---------DAG2 ---------->DOF2                  --------->O2  --------->YAB1 -->DOF2    --------->MYB52(1)   <-----------RAV1(1) <-------TEIL<---------LBD16     <---------ANAC46   aatattgtgatgacaaacagtcatgtcaaaactttttgttggagcttaaggcgggttcatcgtcactctcggagattagacgtcgtgacttattgatcat  3892800                        ------>ZmHOX2a(2)                      --------->ARR14(2)                      <---------ARR14(2)                     <------ZmHOX2a(1)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->SPL1(2)               --------->SPL7              --------->SPL1(1)              <---------SPL1(1)             <---------SPL1(2)              --------->ALFIN1             <---------SPL7                 ----------->HVH21                                       <            <---------ANAC58              <---------ANAC46                                   <-------            <---------ANAC46            <------MYB46(1)                                    <------MYB46(1)            <---------ANAC55(2)       <---------WOX13(1)                                   <------MYB83            <---------ANAC58        --------->ATHB12                                    <---------ANAC58           <-----------------------TaNAC69(2)  <---------WOX13(1)                       <---------ANAC46          <------------------SPL14 <---------YAB1                                       <---------ANAC58         ------------------>SPL14  --------->ICU4                                 --------->ATHB12  < -->YAB1<---------GLK1(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   --------->ICU4------ --YAB1 --------->GLK1(1)<---------DDF1 <------MYB83                  <------ZmHOX2a(1) <---------AtLEC2   cgttttgaagaattccgtacggaggatcgacatggttatgattggtgtgatggatgatacaaaacaacatgaggagatggagaatgatttgcttggtgtg  3892900                                                                    --------->GLK1(1)                                                                    <---------GLK1(1)                                                              <---------MYB46(3)                                                           <------MYB83                                                           <---------ANAC46                                                           <------MYB46(1)                                                          <---------MYB46(3)                                                          <---------DEAR3(1)                                                          --------->MYB52(2)                                                          --------->MYB46(2)                                                          --------->MYB55(2)                        -                                                         <---------MYB55(1)                       <--                                                         --------->SPL7                           <--                                                        <---------MYB52(1)               ============                                                     ==============================HOX2a_HOX2a    ---                                                     ------>ZmHOX2a(2)                   ------>ZmHOX2a(1)                                                     ====================HOX2a_HOX2a    <---------MYB59                                                     =================================HOX2a_HOX2a ---                                                   <---------ARR14(2)          ======================       --------->ANAC46                        <------ZmHOX2a(1)  <------ZmHOX2a(1)    --------------    --------->ZAT18                            =============HOX2a_HOX2a        <------ZmHOX2a(1)  <--   <------ZmHOX2a(1)     --------->ICU4      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     -------------- ------ZmHOX2a(1)    <------ZmHOX2a(1)      --------->CCA1(2)--------->ALFIN1 ----------->GT1     <-- --ANAC46    ======================================================================================== xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ---------->DOF2 <---------SPL7       <------ZmHOX2a(1)    <--- ----->HVH21 <---------------AGL15<---------ETT(2) --------->ARR14(2)       =========================   aaggaggacacaaaactatttgaggagatgatggagtcgacaaaagataggatgatccgttcggtggaggaactcttaggaggagaatttcctaatcgtg  3893000     --------->HSFB2a(2)     <---------HSFB2a(2) --------->TOE1(2) ----->ZmHOX2a(2) -------AGP1 ---------ARR10 ======HOX2a_HOX2a                                                                                  - ------>ARR14(2)                                                                              <------ ------>ARR11(3)                              --------->TGA2(1)                               <------ ======HOX2a_HOX2a                            --------->REM1(1)                             <-------- --->AG                                       <---------bZIP60(1)                           --------- -------ARR14(2)  <---------TGA1a             <---------TGA2(1)                            --------->ALFIN1 --->AGL1         --------->O2                --------->bZIP60(1)                        <---------ANAC58 -------ARR11(3)  --------->TGA1a            <-------TEIL                                xxxxxxxxxxxx ====MADS_MADS  <---------ALFIN1            <-----------GT1                              <---------ANAC46 ------CCA1(2)<---------ALFIN1 <---------ANAC58              --------->ANAC46         --------->ANAC46 ======HOX2a_HOX2a<---------O2 <---------ANAC58         ------->TEIL  <---------REM1(1)  <---------ANAC58   gatcttacgagaacgtccacacttggctcagtagcgttcttactagttacatcacatgtatcgacgaaattggtgaaggtgcctataaacgccgtgtcga  3893100  Previous    Next  AGI:  At1g11590.1    Description:  pectin methylesterase, putative. similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G27980.1); similar to pectinesterase [Arabidopsis thaliana] (TAIR:AT4G03930.1); similar to Pectinesterase-1 precursor (Pectin methylesterase 1) (PE 1) (GB:P14280); similar to unnamed protein product [Vitis vinifera] (GB:CAO69682.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectinesterase, catalytic; (InterPro:IPR000070); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) Range:  from: 3892580    to: 3894677    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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