Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->MYB52(2)                                 <--------P                               ----------->GT1                              --------->DAG2    --------->ALFIN1          <XXXXXXXXXXXXXXXXXXXXMIR426    <---------DEAR3(1)        <---------TOE1(3)   <--------P      --------->ARR11(3) >AGL15  <------NtERF2    --------->ANAC58 -AGL15 --------->LBD16   <---------ANAC55(2) ->AG <---------LBD16------>ZmHOX2a(2)                   --------->ATHB12 --AGL2<---------ANAC58   --------->ANAC55(1)           --------->ICU4 ->AGL2<---------ANAC46   --------->ANAC58           <---------ARR14(2)     <----------DOF2 --AG <------NtERF2<---------ARR11(3)                --------->ARR14(2)    <---------ANAC58 ->AGL1<---------ANAC58   --------->ANAC55(2) <---------GLK1(2)            <---------ANAC58  <-------TEIL --AGL1<---------DEAR3(1) --------->ANAC46  <---------YAB1         <---------ZAT6           ---------   atcgagttggcggggatgagtgatcttcacgtaaggttagtttttcaagattgtggaactgattagttagtgttttggctttcaatacttgaacatgcat  3882900                           -------->ATHB1                           --------->YAB1                                   <---------HSFB2a(2)    --                           <---------ICU4<---------ARR14(2)             <---------WOX13(1)         <-                           --------->ATHB12      ------->TEIL         --------->ATHB12      <--------                           <--------ATHB1--------->ARR14(2)           <---------ICU4        <--------                           --------->ATHB51   --------->ANAC58        <--------ATHB1      --------->ICU4                          <---------ATHB12    --------->ANAC46       <---------YAB1       <---------YAB1                          <---------ATHB51    --------->ANAC58       --------->ICU4     --------->YAB1                          --------->ICU4<------ZmHOX2a(1)         <------ZmHOX2a(1)  --------->YAB1<- >AtLEC2              <-------TEIL    <---------TOE2(3)<---------At4g35610  --------->HSFB2a(2) <----   atagccaagtttatagtttaaagattcaataattgcagtttaggattcacgaatttgtgctaactagaggaatgattgctcgaagacttataatgcttat  3883000     <----------DOF2                  <---------AHL20(2)                                            -    <---------ANAC58                ------>MYB83                                                    -    <---------ANAC58       <---------ZAT14      <----------DOF2                              -------- ------->ALFIN1            --------->ZAT18  <---------MYB52(1)                             ---------- ----------RAV1(1)       --------->ZAT14  <---------ICU4      <---------TOE2(3)          <---------ANAC55(2) -ANAC58               <---------------AtSPL8  <---------ANAC58                          --------->ANAC55(2) -ANAC58      <------------CBF    <---------MYB59             <---------TOE1(3)        --------->ICU4 --------REM1(1)       --------------->AtSPL8  <---------ANAC58                    ------------>CBF - -------RAV1(1)     ---------->DOF2 ------>MYB46(1)        ----------->HVH21<------------CBF<--------   ggtgttgctttgcatccattgagaaagagtactctaccaaataatcgttgctttactatgtgtgaaggtttggaaaaagattgtatgcaatacttgaccc  3883100                         --------->ARR14(1)                         --------->GLK1(2)                        --------->ARR11(3)               ----------->GT1                                                                <------     <---------HSFB2a(1)<---------ARR11(3)                                                    -------     --------->HSFB2a(1)--------->ARR14(2)                                                   -------- -------->ANAC46        <---------GLK1(2)                  <---------TOE1(3)                 <------- -------->ANAC58        <---------ARR14(2)       <---------ZAT2  --------->ANAC58   --------->ANAC58 ->PCF2   --------------->AGL15     ---------->ID1 <----------DOF2                  --------->ANAC58- ->HVH21  <---------------AGL15 <----------DOF2  --------->ZAT2  --------->ANAC58   --------->ANAC46< -------->ANAC58      ----------->ARR10<----------DOF2     <---------TOE2(3)      <---------ALFIN1<-- -WRKY18(1)  ---------->DOF2    --------------------->WRI1---------->DOF2     <-----------HVH21   ---   acaagaaaccttcttaaaagtgaaaagattctctctttgttcttttcttccagctttgtttaaagttaagcatctaattccttcacaccctagaatttaa  3883200         --------->At4g35610         <---------At4g35610 ---AHL20(2) -->AHL20(2) ->AHL20(2)                                             --------->AHL20(2) --AHL20(2)   ----------->GT1     <------MYB46(1)       <---------AHL20(2) -------->ANAC55(2)            <---------MYB52(1)       --------->AHL20(1)                   <------- ---------ANAC55(2)      <---------YAB1                 <---------AHL20(1)                 ---------- -------AHL20(2)       <-----------GT1                 --------->AHL20(2)                  --------->MYB52(1) ------>AHL20(2)   <---------YAB1 <------MYB83    ------------>CBF                <------NtERF2   ttacttaagagagctcatgttaatattactactgtttggttttgctaagaaaatcaattttattttggaaattttgactatggcagagacaaataaagga  3883300                                                             --------->YAB1                                                        <------ZmHOX2a(2)                                                      ------->GAMYB                    <----------DOF2                  <---------MYB52(2)                   <---------ANAC58                  --------->MYB46(3)    >>>>>>>>>TBF1  <---------ANAC58            ----------->HVH21   <----------DOF2               <--- --TOE2(3)      ------->PIF5             <---------CCA1(2)   <---------ICU4                 <-------- >DOF2          <-------PIF5  <---------ICU4 <----------DOF2<------ZmHOX2a(2)         <---------ALFIN1   attgaagaagaagtggcaagtgcttttgtgaatcactactaccatctctttgacaacgatcgatcatcgctttcttctctctacaatcccacctctttgc  3883400                           --------->ALFIN1                           <------NtERF2                         <---------ANAC58                         <---------ANAC46                         <---------ANAC58                      <---------DEAR3(1)                       --------->SPL7           <---------ALFIN1                     <---------LBD16                          <---------MYB52(1)       <---------At4g35610                  <------ZmHOX2a(2)                          <---------SPL7  <---------ICU4     <----                 <---------ARR11(3)            --------->TOE2(3)             --------->ATHB12   <----         <---------------------WRI1            --------->TOE1(3)             <--------HAHB4     ----- <----------DOF2 --------->ARR11(3)--------->ARR11(3)       <---------ANAC58--------->ICU4 --------->DEAR3(1) ------ZAT18 --------->MYB52(1)    <---------ARR11(3)       <---------ANAC58<---------ATHB12<-------- --DOF2 <----------ID1--------->ANAC46        --------->At4g35610  <------ZmHOX2a(2)   --------->At4g35610   tcacttttgaaggccaaacgatctacggcgtggataacatctccaataagcttaaacaacttccgttcgatcaatgccatcatttgatcagcaccgtcga  3883500                     --------->ALFIN1                    <---------MYB52(1)                   <---------DEAR3(2)                                                   <---------TOE2(3)                  <---------DEAR3(1)                                                    <---------TOE2(2)      <---------RAP2.6(3)                                                               <---------TOE1(2)     --------->RAP2.6(2)    <---------ANAC46                                  =============HOX2a_HOX2a     --------->DEAR3(1)    --------->ALFIN1                                   <------ZmHOX2a(2)   <---------At4g35610     <---------AtMYB61                                 <---------ARR14(2)   --------->ZAT2 <---------DREB2C(2)                                        --------->ARR14(2)   --------->At4g35610<---------MYB46(3)                                     <-----------ARR10 -----GLK1(2)     <---------MYB46(3)              --------->At4g35610        --------->ARR11(3) -----ARR14(2)    --------->MYB55(2)              <---------At4g35610        <---------ARR11(3) ---->ARR14(2)   <---------ANAC46      <---------TOE1(2)                    <------ZmHOX2a(1)       - ---HVH21        <---------ORA47(1)   ------>ZmHOX2a(1)          --------->AHL20(2) ------>ZmHOX2a(1)   ttctcagccgtcttcaatggccggtggatgtggtggaatcctagtttttgtgagcggtagcatccaattacatggagaggatcatcctcttaggtttagc  3883600                                                                  --------->TOE2(3)                                           <------MYB46(1)       <---------At4g35610                                           <------MYB83          --------->At4g35610                                           ----------->GT1<---------TOE1(2)                                 <---------HSFB2a(1)      <---------TOE2(2)                                 --------->HSFB2a(1)      <---------TOE2(3)                                <---------TOE1(3)      --------->YAB1          <---------CCA1(2)     <---------TOE1(2)     <<<<<<<<<ARR2                        ---------- -------->AGP1                  <---------TOE2(2)     <<<<<<<<<ARR1            <---------AtLEC2    <-   caggtctatctcttatctatttgtaatcgattcgaaggtttcatttggttaaaacaatcttaggtttagcttaatcgatttgcataaaacaaaatgttat  3883700                                                  --------->YAB1                                         <----------DOF2                     --------->AHL20(2)                                       --------->LBD16               <-----------GT1                                      --------->ANAC58            ----------->GT1              ------                                      --------->ANAC46        <---------TOE2(3)                ------ ->GT1                                --------->ANAC58      <---------AHL20(2)      ------->TEIL --------YAB1             --------->ARR11(3)--------->YAB1 <---------YAB1    <---------AHL20(2)------   tttcattgttttctagtttccatcggtttatcttggacccccgctataacaatcttcaatttttaatgttgttactaaattatatgaatcaaactataag  3883800  Previous    Next  AGI:  At1g11560.1    Description:  OST3/OST6 family protein. similar to OST3/OST6 family protein [Arabidopsis thaliana] (TAIR:AT1G61790.1); similar to unknown [Brassica rapa] (GB:ABB97041.1); contains InterPro domain OST3/OST6 (InterPro:IPR006844) Range:  from: 3881788    to: 3882819    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g11570.1    Description:  NTL (NTF2-LIKE); protein transporter. similar to NTF2B (NUCLEAR TRANSPORT FACTOR 2B), Ran GTPase binding / protein transporter [Arabidopsis thaliana] (TAIR:AT1G27970.1); similar to NTF2B (NUCLEAR TRANSPORT FACTOR 2B) [Arabidopsis thaliana] (TAIR:AT1G27970.2); similar to NTF2A (NUCLEAR TRANSPORT FACTOR 2A), Ran GTPase binding / protein transporter [Arabidopsis thaliana] (TAIR:AT1G27310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69683.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075) Range:  from: 3883280    to: 3883663    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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