Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------ANAC58          <---------ANAC58    --------->ATHB12 ------->AHL20(2)     --------->AHL20(2) --------AHL20(2)     <---------AHL20(2) ---GT1 <-----------GT1       <---------AtLEC2                               <----------DOF2   tttaaatgatttacgagcgatgaaataaatatgcatggtctagttttatgtaaactctctaatccatgtatgagtctctcttttttgtattactaagtgg  3881400                                                ------>ZmHOX2a(1)                         -------->HAHB4                                                <---------------AGL15              ----------->GT1                                                --------------->AGL15              <---------ZAT6                     <---------GLK1(2)         <---------MYB59                   <------------CBF                 ---------->DOF2               ----------------->AGL3          --------->AHL20(1)             ------>ZmHOX2a(1)             <---------DEAR3(2)                  <---------YAB1            <---------------AGL15         <---------DREB2C(2)                  --------->AHL20(2)            --------------->AGL15   <------NtERF2                              <---------AHL20(2)           =====================================================MADS_MADS     --------->AHL20(2)           ----------------->AGL3 --------->ETT(1)                       ------------>CBF --------->AHL20(2)           <---------ANAC46      --------->RAP2.6(3)                   --------->YAB1     --------->YAB1     <---------TOE1(2)<-----------ARR10  --------->DDF1               --------->ICU4     <---------YAB1     <---------TOE2(2)--------->GLK1(2) <-----------HVH21             <---------YAB1--------->TOE2(3)   tttctcatatgtttcctgtaaaagaatctcaacttgtcggcatgtcggtcctaataagagaaaccagaagtgatcatcaattttattgttaattatagaa  3881500                                                                                       xxxxxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        --------->ARR14(2)            <-------TEIL                                                    --------->ATERF1(1)              xxxxxxxxxxxxxxxx                                                    <------NtERF2                    xxxxxxxxxxxxxxxx                                                   ------>NtERF2                   <---------DEAR3(2)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------TOE1(2)                                       xxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxx>smallRNA(se3)                              xxxxxxxxxxxxxxxxx>smallRNA(se3)                    --------->ALFIN1 ---                              <---------MYB52(1)xxxxxxxxxxxxxxxxx>smallRNA(le3)  <------NtERF2<------                             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->ALFIN1   ---                             xxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------ANAC46   <--                             xxxxxxxxxxxxxxxx>smallRNA(le3)                    <---------ANAC58   <--                             xxxxxxxxxxxxxxxxxx>smallRNA(se3)                  <---------ANAC58 <----                             xxxxxxxxxxxxxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxx>smallRNA(s)                             *TSS    <------NtERF2 ----------->RAV1(1)     xxxxxxxxxxxxxxxx>smallRNA(se3)                             xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxx>smallRNA(se3)                             xxxxxxxxxxxxxxxx>smallRNA(s)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       ---------->DOF2   xxxxxxxxxx                             xxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxx>smallRNA(fl3)                             xxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                             xxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             xxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        --------->ANAC46 --------->ZAT18<---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        --------->ANAC58xxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------CCA1(2)xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(fl3)  -------        <-----------GT1 --------->ANAC58<---------AtMYB61--------->CCA1(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tgtttaagtttcacatatcatacaacaagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac  3881600         <------------------------ANAC81       <---------ARR11(3) xx>smallRNA(i) xx>smallRNA(si3)                                                   --------->YAB1 >smallRNA(s)                                                      <---------ATHB12 ------>ZAT2                                                     --------->WOX13(1) ---ALFIN1<----------DOF2                                      ------------>CBF ------>At4g35610                                              <-------TEIL -------ZAT2          ---------->ID1                        ----------->GT1 ----------->TBP -------At4g35610     <-----------GT1                       <---------HSFB2a(1) -----ALFIN1    <----------DOF2                             --------->HSFC1(2)                     -- xxxxxx>smallRNA(s)  <-----------GT1                        <---------HSFC1(2)                     <- ---->RAV1(1)---------->ID1  <----------DOF2               <---------------AtSPL8      <---------GLK1(2)   agctgtcaatttcttttcctttttttcccttctttaaaactaaaccctctaactcatcaagaaggttcaatcaaacctataaacacctagaattttgaac  3881700                                   <------ZmHOX2a(2)                                   --------->GLK1(1)                                   <---------GLK1(1)                                  <-----------ARR10                                  --------->AGP1                                  --------->ARR11(3)                                  <---------AGP1                                  <---------ARR14(2)                                  --------->ARR14(2)                                  <---------ARR11(3)                                 <---------CCA1(2)                               --------->HSFB2a(2)                               <---------HSFB2a(2)                           --------->GLK1(1)                        ------------>CBF                        <------NtERF2                       --------->ANAC46                                        <---------------AGL15                       --------->LBD16                                         --------------->AGL15                       ------>NtERF2                                          ------>ZmHOX2a(2)     -                      <---------ETT(1)                                      <---------ARR11(3)     <-                      --------->ANAC46                             --------->YAB1                  <-                      <---------LBD16                         ------------>CBF<-----------------AGL3- ------->ARR14(2)     --------->LBD16           <----------DOF2 --------->WOX13(1)      <---------YAB1 --------ARR14(2)    <---------LBD16------>ZmHOX2a(2)<<<<<<<<<TBF1<---------ATHB12    ----------->GT1   agttcttcacttctccagtatttcccggcaattccagatctctctatctcctttcttcttcaaatccaatcagagagtgatctaaaaatggtgattcaaa  3881800                                                                       ------>ZmHOX2a(2)                                                                      <------ZmHOX2a(2)                                                                      --------->GLK1(1)                                                                     <---------ARR14(2)                                                                     <---------AGP1                                                                     --------->ARR11(3)                                                                     --------->AGP1                                                                 <-------TEIL                                                   --------->ARR14(2)--------->ARR14(2)        <---------CCA1(2)                          --------->GLK1(2)<---------At4g35610      --------->YAB1                               <---------ARR14(2)<---------ARR11(3) ------>TEIL                                      <---------ARR14(1)<---------CCA1(2) --------GLK1(2)                    <---------AHL20(2)         <---------GLK1(2)                   -- --------ARR14(1)       <---------YAB1   <---------At5g28300   --------->ARR14(2)                 === -------->GLK1(2)     --------->TOE2(3) <-----------GT1        <---------ARR14(2)                 <--   cgaatctctcatatcgtttcttcatcttaattgtgtttttatttaccctagcgaatccaaaatcagattcagatctcaaaaacgaactagtctccctccg  3881900               <---------ANAC58               <---------ANAC46                                         ------>ZmHOX2a(1)         --------->GLK1(2)                                              --------->HSFB2a(2)      --------->DEAR3(1)            --------->DEAR3(1)                  <---------HSFB2a(2)   ------->GAMYB   <---------ARR11(3)                          <-----------ARR10   --------->DEAR3(1)    ------>ZmHOX2a(1)                     <---------ARR11(1)  --------->MYB46(3) ------>ZmHOX2a(2)                         --------->ARR14(2)  <---------MYB55(2)--------->GLK1(1)   <---------HSFC1(2)     <---------ARR14(2)  --------->DEAR3(2)<---------GLK1(1)   --------->HSFC1(2)   --------->LBD16 -------->P<-----------RAV1(2)--------->MYB46(3)         --------->TOE2(2)   <---------MYB59 ------->MYB46(3)  --------->ARR11(3)------>NtERF2      --------->MYB46(3) <---------ARR11(3) ===============================HOX2a_HOX2a        --------->YAB1 <---------ALFIN1                 -- ----ZmHOX2a(2)<---------ANAC58   ------->GAMYB   <-------TEIL<---------CCA1(2)        --------->YAB1   atcaaccgccgaatcaggcgtgatctccttcaacaacgacgacgtttccaaattcataacctccgtatccactcctagaccttactcactcatcatcttc  3882000                                                        --------->ARR14(2)                                                    --------->LBD16                                                    ------>NtERF2                             --------->ZAT2        --------->DEAR3(1)                 --------->ANAC58                  --------->RAP2.3(2)               <---------ALFIN1                    --------->RAP2.6(2)          --------->YAB1              <---------REM1(2)                  ------>NtERF2          --------->LBD16           <---------At4g35610           --------->LBD16<---------ARR14(2)<---------ALFIN1           --------->At4g35610          --------->HSFB2a(2)             ------>NtERF2        <-------TEIL         <---------At4g35610 --------->LBD16       --------->ANAC58       <---------MYB52(1)    --------->At4g35610 <---------At4g35610   --------->ANAC46    <------NtERF2--------->ANAC46       <---------HSFB2a(2)            --------->ANAC58           <--   ------>NtERF2 --------->ANAC58--------->ANAC55(2)<------NtERF2     <---------LBD16    --------->MYB46(3)  --------->ANAC46           <---------ZAT2  <---------ARR14(2)      <---------ATERF1(1)------>MYB46(1)  --------->DEAR3(1)        --------->ANAC58 --------->ARR14(2)     <---------ARR14(2)  ------>MYB83  <---------DEAR3(1)        --------->ANAC58--------->GLK1(1)       --------->ARR14(2) ----------->RAV1(1) --------->HVH21<---------LBD16 <-------TEIL<---------GLK1(1)    --------->O2<----------DOF2 --------   ttcgacgccgttcatctccacggcaatagccagctacgtcttccagagttccgccgcgaattcagactcgtctccgccactttcatcaccaacaacaaca  3882100                                                                           <---------MYB52(1)                                                                    <----------DOF2                                                                  ------>NtERF2                                                                 --------->RAP2.3(2)                                                                --------->RAP2.3(1)        ------->GAMYB                                          ------>NtERF2       --------->ANAC46                                        --------->LBD16       --------->ANAC58                                        <---------At4g35610       --------->ANAC58                              --------->HSFB2a(1)   <------NtERF2      --------->RAP2.6(3)                            --------->HSFC1(2)   ------>NtERF2     --------->MYB52(1) <---------At4g35610          <---------HSFC1(2)   <-----------HVH21 ------->TEIL    <---------ARR11(3)        ------->GAMYB  <----------DOF2--------->DEAR3(1)  -------- -------ATHB12   --------->ARR11(3)      --------->At4g35610  --------->ANAC46           <---------ALFIN1 --->RAV1(1) ---------->DOF2     <------ZmHOX2a(2)--------->LBD16--------->DEAR3(1)    --------->AtMYB61   atgaatctaacggcacaaagctcttcttctgcgagatcgaatcaactcactccgaggcttctttccgccgcttcgccgtcgagtcactaccacacatttc  3882200            ----------->RAV1(1)           --------->ANAC58           --------->O2           <---------TGA1a           --------->TGA1a           ----------->HVH21           --------->bZIP60(2)           --------->ANAC58         <------ZmHOX2a(2)         <---------ALFIN1         --------->At4g35610                                         -------      --------->PCF2    <-----------GT1                  <-----------GT1          <------NtERF2------  <---------MYB52(1)  --------->AHL20(2)     <---------DEAR3(1)           --------->ATHB12    ------- <-----------HVH21  --------->GLK1(2)       <---------ORA47(1)           <---------ATHB12    -------- ->GLK1(1) --------->ANAC46   --------->GLK1(2) --------->ALFIN1   --------->At4g35610     <---------SPL7   cctcgttagccccacgacagagaatttaacagaatcagatcaaatggacggtggagatttcactggattagccgaatcaatggcagagttcgtcgaacgt  3882300  Previous    Next  AGI:  At1g11550.1    Description:  pre-tRNA. tRNA-Leu (anticodon: TAG) Range:  from: 3881529    to: 3881608    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g11560.1    Description:  OST3/OST6 family protein. similar to OST3/OST6 family protein [Arabidopsis thaliana] (TAIR:AT1G61790.1); similar to unknown [Brassica rapa] (GB:ABB97041.1); contains InterPro domain OST3/OST6 (InterPro:IPR006844) Range:  from: 3881788    to: 3882819    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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