Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------GLK1(1)                     <---------At4g35610         --------->GLK1(1)                     --------->At4g35610        --------->ARR11(3)                    ----------->RAV1(1)        --------->YAB1                  --------->At4g35610     <---------YAB1            --------->TOE1(3)                  <---------At4g35610<---------ZAT6                 --------->TOE2(3)            <------ZmHOX2a(1)    <---------MYB52(1)            --------->ZAT18   <---------------AGL15--------->ZAT2  <-----------GT1    --------->DAG2                    --------   --------------->AGL15--------->At4g35610   <---------ATHB12 <---------ZAT18               <------- ---------DOF2  --------->ZAT18  <---------ARR14(2)     ---------->DOF2                 <---------At4g35610   actttcttcaagtaggagtgagcagcagctatgccgatagtgttaccaatgatatccacaaagagtgcaacctcagaggtagagaaactcatctcctttc  3860100                           ------->GAMYB                         --------->ANAC58                        ------->GAMYB                       <---------MYB55(2)                ------>ZmHOX2a(2)               <------ZmHOX2a(2)               --------->CCA1(2)                                 <---------------AGL15              --------->AGP1                                    ------>ZmHOX2a(2)              <---------ARR11(3)                              <---------ARR11(3)              --------->ARR11(3)                              --------->ARR11(3)       --------->ANAC46<---------MYB111(2)                   --------->YAB1    ----------------->AGL3--------->MYB46(3)           --------->ZAT6    =============================================================================MADS_MADS  ------->TEIL<---------AGP1    <----------ID1      ------>ZmHOX2a(1)      ---------->DOF2 ------------->WRI1    --------->MYB46(3)           ===================HOX2a_HOX2a ---DOF2  ---------->DOF2--------->ANAC58  --------->YAB1   <---------ATHB12       ---------->DOF2---   tatgcatccacataaagatctaacaacaaccaaaaaaacaaactttcataaatcctaacacaatgatctctaactagaaaagaaatagagcgatgaatac  3860200                                                                                   ------>NtERF2                                                                                --------->ARR14(1)                                                                                --------->CCA1(2)                                                                                <------ZmHOX2a(2)                                                                               --------->ARR11(3)                                                                               <---------ARR14(2)                                                                               --------->ARR14(2)                                                                               <---------ARR11(3)                                                                               --------->ARR14(3)                                                                               --------->AGP1                                                                               <---------ARR14(3)                                                                        ----------->HVH21                                                                      <---------At4g35610    <-------                                                                      --------->At4g35610 -----------                       <---------LBD16                                <---------ZAT2      -----------                      ----------->RAV1(2)                <---------ZAT2 ----------->TGA1 <-----------HVH21                    <---------GLK1(1)                    --------->At4g35610  <---------GLK1(1)                   --------->ARR11(3)                    <---------At4g35610  --------->GLK1(1)    --------->MYB59<---------ARR11(3)               --------->AtLEC2  --------->ZAT2----------->RAV1(2) ------------>MYB.PH3(2)                     <---------ANAC58       ------>NtERF2------>ZmHOX2a(2) ------->DOF2  ---------->DOF2               <---------ANAC58 <----------DOF2----------->ARR10     <-   aaaagttagatagatgagaaagatacctggagagcatctacatgtttgccttccatgtaagctgctttgccgagctgacgagatccgcctgggtgacggg  3860300                          <---------YAB1                        --------->YAB1                       --------->ICU4          <--------P              <-----------GT1                   --------->LBD16         <---------ANAC46 <---------GLK1(2) --ANAC46          ------>NtERF2          <---------LBD16  <---------At4g35610 >TGA1            --------->ANAC46   --------->ARR11(3)    --------->At4g35610 >HVH21          <---------LBD16     <---------ARR11(3)    <---------ZAT2      <----------DOF2 --------ALFIN1 ------>ZmHOX2a(1)  <---------TOE2(3)   --------->AtMYB61     <---------DAG2--------->At4g35610   aacacccttcttctcttcctccgcgatgatgaattctaaggtctctcgggtaagagacctcagcttcttgaaaataccactctttgcattctcagcatca  3860400                             ------>ZmHOX2a(2)                            --------->At4g35610                        <---------MYB52(1)                       <-------GAMYB                  --------->At4g35610                  --------->HSFB2a(1)                  <---------HSFC1(2)                                                            -----                  --------->HSFC1(2)                                               --------->YAB1                  <---------HSFB2a(1)                                ------>NtERF2<------ZmHOX2a(2)                  --------->ZAT2                      --------->At4g35610        --------->ARR11(3)             >>>>>>>>>TBF1 <---------ARR14(2)      <---------ZAT2   --------->ARR14(2)       --------         --------->At4g35610<---------At4g35610    --------->ZAT2   <---------ARR14(2)       <-------      <---------At4g35610  --------->ARR14(2)      <---------At4g35610   <---------MYB52(1)  <-------      --------->At4g35610--------->WRKY12<---------MYB52(1)    --------->MYB52(1)<---------ARR11(3)   =================================HOX2a_HOX2a    --------->At4g35610<------NtERF2------>ZmHOX2a(2)>   <------ZmHOX2a(1)  <---------ANAC46   <----------DOF2  >>>>>>>>>TBF1 <---------RAP2.6(3)  --------   caagaggaagcagaagaagaagctccgttgatctgcctgttccctttgttctcagcagaagaagaaaacggagccgttctcgcgatcttaatctcagcag  3860500                                                   <----------DOF2                                        ------>ZmHOX2a(2)                                       <------ZmHOX2a(2)                                      <---------ARR11(3)                                      --------->ARR14(3)                                      <---------ARR14(3)                                     --------                                      --------->ARR11(3)                                     --------   >>>>>>>>>TBF1                      --------->ARR14(2)                                 --------->ANAC46 ---->At4g35610                       <---------ARR14(2)                               <---------ORA47(2) ->At4g35610                          --------->AGP1                                  <---------DEAR3(1) --ZAT2                 --------->HSFB2a(2)  <---------At4g35610               <-----------GT1    --- --At4g35610            <---------HSFB2a(2)  <---------CCA1(2)              <---------YAB1 <------NtERF2 >>>>>>>>TBF1 ------>NtERF2          <---------GLK1(1)                 ----------->RAV1(2)------>NtERF2 ->ZAT2 --------->MYB52(1)          ----------->ARR10                 --------->GLK1(2)<---------RAP2.3(1)   aagaagaagaaaacggagccattgttctcgtaagcgtagagatcttcatctctcttttccatagatgaagagaacctgatgataccattcggcgcaaggc  3860600                                                                                        -------------                                                                                   ------>ZmHOX2a(2)                                                                            <---------ARR14(2)                                                                            <---------ARR11(3)     --                                                     --------->YAB1         --------->ARR14(2)    <--                           --------->TOE1(3)        <---------ATHB12       ===============HOX2a_HOX2a                           --------->TOE2(3)      --------->WOX13(1)       <------ZmHOX2a(1)      <--                     --------->YAB1             ------------>CBF        --------->YAB1  <------------ ->ANAC58   --------->TOE1(3)             ----------->TBP      ----------->GT1   --------->ARR11(3)<- ->ANAC58   --------->TOE2(3)            --------->AHL20(1)  <---------ANAC58    <---------ARR11(3)<- -------->RAV1(1)   <---------YAB1       <---------AHL20(1)  <---------ANAC58--------->CCA1(2)    ---   caacattttccaaaccctaattttgataaccctaattctctaatatataaaacaatcaagttgccttgttaaaatcaggatatgatctctcttatattag  3860700    <---------ANAC58    <---------ANAC58   --------->MYB52(2) -->AGL15 --------->GT1          <----------DOF2 -------TOE1(2)      <---------ARR11(3)                                     --------->AHL20(2) -------TOE2(2)     --------->REM1(1)                     <---------ZAT14  <---------AHL20(2) ---AGL15------------>CBF   ---------->ID1                --------->ZAT14  --------->AHL20(2) -----MYB83        ------>MYB83                           <---------ZAT18--------->YAB1 -----MYB46(1)     ------>MYB46(1)                  ------->TEIL   ----------->GT1 ------>MYB59    <---------MYB59                 <---------YAB1  <------------CBF                  --   taggttacttacacaattacctacatctttgtcgatttgtcagtttgacttatgaatcagtctactagattgtaaaaataaataaaacgatgaaatgtct  3860800                            <---------DAG2                            <----------DOF2                        --------->ZAT18                    <-------MYC3                    <-------MYC2                    ------->MYC2                    ------->MYC4                    <-------MYC4                    ------->MYC3                   --------->ANAC55(2)                       --------->ANAC46                   --------->TGA1a                         <---------ALFIN1                   <---------TGA1a                       --------->AtMYB61                   --------->O2                          ------->GAMYB                   ====================bZIP_DOF         --------->MYB46(3)                   <---------ANAC55(2)                --------->WOX13(1)                   ==============================================MYC_MYB                   <---------O2                      <---------WRKY12                  ------------>OsbHLH66              <---------WRKY38(1)               <---------ALFIN1                     --------->WRKY18(1)              <---------ZAT14                      <-----------HVH21                      --------->HSFB2a(2)              <---------REM1(2)                  --------->LBD16                     <<<<<<<<<TBF1          --------->ZAT6<---------ZAT18        <---------LBD16              --------->HSFB2a(1)     --------->ANAC46   <---------ZAT14      <---------ARR14(2)            ------->TEIL   <---------HSFB2a(2) ------->YAB1 --------->ZAT14                --------->ARR14(2)    --------->ZAT14<<<<<<<<<TBF1   ataatacccctaactctacacacgtgtgaactttttgaatagtactggacccgggtcaaccacacacagtagacacgagccttcttcttcttctctaagc  3860900            -------->P                                           <---------ANAC58        --------->At4g35610         -------->P                   <---------ANAC58--------->At4g35610        <---------At4g35610   <---------At4g35610             <-----------GT1    <---------ZAT2 <---------ZAT14              --------->At4g35610    <---------At4g35610    <---------LBD16 --------->ZAT14            --------->ZAT18          --------->At4g35610    ------>ZmHOX2a(2) --------->ZAT18            <---------ZAT18      --------->ARR11(3)     <---------YAB1     --------->ZAT6   gagtgaagtaagcttaccagtggcagtgagtgagctcttaccagtgtttagggtcttctgcaattttccttgttttgatcgggagcttgatcaagactac  3861000  Previous    Next  AGI:  At1g11470.1    Description:  similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G02370.1) Range:  from: 3859874    to: 3860522    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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