Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         <---------ARR14(2)                                         --------->ARR14(2)                                        <------ZmHOX2a(1)                                        ==============HOX2a_HOX2a         --------->ANAC58              --------->HSFB2a(1)   ---------->DOF2             <---------ZAT14 --------YAB1                  --------->ZAT14 <------ZmHOX2a(2) ------ICU4         <---------At4g35610<---------HSFC1(2)           --------->ATHB12 ----->YAB1         --------->ZAT2     <---------HSFB2a(1)         --------->MYB46(3) -----ATHB12        --------->At4g35610--------->HSFC1(2)         ------->TEIL ---->ICU4     --------->YAB1  --------->ARR14(2)          <---------ANAC55(2) -ATHB12 --------->ANAC58      <---------ARR14(2)   --------->TOE2(3)                        <-------   gatgagaaagtaagcaataagcagctaagagagtatacagaaggatccgatcaacattaagacgtatgaaccattgaaactcgtaaatgtcgaaacttta  3837200                                                  <---------YAB1                                                <---------ICU4                                                --------->YAB1                                               --------->ICU4                                               <---------ATHB12     <---------MYB46(3)                   --------->ARR14(2)        --------->GLK1(1) ---------->DOF2                   <---------ARR14(2)    --------->YAB1      --------->ANAC46                  =============================HOX2a_HOX2a   --------->ANAC58                   -----                  <------ZmHOX2a(1)     <------ZmHOX2a(2)    --------->ANAC58                 -------               --------->LBD16    <---------ARR14(2)        --------->LBD16                   -------  --------->AHL20(2)              --------->GLK1(2)       --------->TOE1(2)    <---------MYB52(1) ---DOF2       --------->HSFB2a(2)--------->ARR14(2)---------->DOF2 ----------->GT1  --------->AHL20(2)   cagataaaatgagtctccgaggaaatgggaaacaaaaatccgatcagaaatcatgaaagacccacgaaagtggttaagcccgtttgattaaacaaacctt  3837300                                                                  <---------GLK1(1)                                                                  --------->GLK1(1)                                                                 --------->ARR11(3)                                   <---------ARR14(2)            <---------AGP1                                   <---------KAN4(2)             ------->TEIL                                   --------->ARR14(2)            <---------ARR11(3)                                   ---------->TaMYB80     <---------ANAC58                            ------->GAMYB                 <------MYB46(1)                           --------->ANAC58               <------MYB83                           --------->ANAC58               <---------ANAC46      <---------YAB1                          ------>MYB83                    <---------ANAC58     --------->AHL20(2)                          ------>MYB46(1)                <---------MYB46(3) ----------->GT1                         --------->MYB52(1)              --------->MYB59    --------->TOE1(3)    <----------ID1      --------->AtMYB61            <---------MYB46(3)     --------->TOE2(3) ------>HVH21          --------->MYB46(3)           <----------DOF2        ----------->GT1        <-- -->TOE1(3)            <---------MYB52(2)          <---------ANAC58------>ZmHOX2a(2)    <------ZmHOX2a(1) -->TOE2(3)   ----------->GT1 ---------->DOF2      <---------ANAC58============================HOX2a_HOX2a   gacatagcgacgaagatggtgagaaaccaacggaaagaatatgcgaaaacagggcttgttgggtatggatctctaaaacgttaaaattgaggagcatttt  3837400                                                        <---------ANAC58                                                 <---------MYB52(1)                                                <----------DOF2            --------->LBD16                                            <---------DEAR3(1)            --------->LBD16        ----                                         <---------SPL7 <---------ANAC58 --------->HSFB2a(2) <-------                                    --------->ZAT14--------->MYB52(2)    <---------HSFB2a(2) --------                                    <---------ZAT14--------->ATHB12      <---------LBD16    <--------     <---------ANAC58       <-----------HVH21  <---------ANAC46   <----------DOF2     ---------->DOF2     <---------ANAC58      <------MYB83  <-----------HVH21      <---------HSFC1(2)<---------ARR11(3) <---------WOX13(1)        <------MYB46(1) --------->SPL7       --------->HSFC1(2)--------->ARR11(3) -------YAB1<----------DOF2<---------DEAR3(2)--------->LBD16    --------->HSFB2a(1) <---------MYB59   ctcattgacttgagcttttggggactagtcggtcacagtctaccgtccggcgttaattgggttcgaagctttcttcccggagaagacctaaagccgatac  3837500                                    <-----------HVH21                                   --------->At4g35610                                   <---------At4g35610                                   ==================================================bZIP_DOF                                   --------->TGA1a                                            <------                                  --------->MYB59                                          <---------ANAC58     --------->CCA1(2)           <-----------RAV1(2)                                       <---------ANAC46  ----------->ARR10        <------ZmHOX2a(2)                              ---------->DOF2  <---------ANAC58 ----->LBD16              --------->ARR11(3)                 --------->CCA1(2)         <---------ARR11(3) --ARR14(2)              <---------GLK1(1)     <---------ANAC58     ----------------->AGL3 <---------O2 ->ARR14(2) ======================HOX2a_HOX2a  <---------ANAC58  --------->ANAC58      --------->ARR11(3) -RAP2.6(3) <------ZmHOX2a(1)  <-----------HVH21<---------SPL7   --------->ANAC58     <---------GLK1(1)   ggagaagagacggaggaagagagagagagatcaggtcaggtcagtgatttcgttcggagagagagacaggcccaaaaaaaggaaattgatatctcgtggg  3837600                             <-----------HVH21                      ----------->HVH21                    --------->ALFIN1                                   <---------DEAR3(2)                  <---------TGA1a             <---------ANAC46        <---------DREB2C(2)                  <---------O2             --------->ICU4            --------->DDF1                 -                  --------->O2        --------->ANAC58             <-----------RAV1(1)              <                  <---------ANAC46    --------->ANAC58        --------->TOE2(3)          ---------->ID1                  --------->TGA1a   --------->TOE1(2)         --------->TOE1(3)     <---------At4g35610       --------->ATHB12      *TSS   --------->TOE2(2)    ---------->DOF2            <---------ZAT2 -- ---ZAT18         ==================================================bZIP_DOF ---------->DOF2   ------   cttaacgcttgatttagtcgacgtgtgacattgtcaaaccaaggaatgatgtgaacataaaaagccttaatgtcggtctaaaagacagcttgtcgtcaaa  3837700                                                                                                 <---                                                                                  <---------ARR11(1)                                                                                  --------->ARR11(3)                                                                                 <---------CCA1(2)                                                                         <------MYB83         <------                                                                         <------MYB46(1)     --------       <-------TEIL                             <-----------GT1        <---------WOX13(1)--------->AHL20(2) -------->AHL20(2)                              <---------AHL20(2)    <------------CBF   <---------AHL20(2) ---------AHL20(2)            ---------->ID1<---------AHL20(2)       --------->ATHB12<----------DOF2 ------->AHL20(2)      <---------AHL20(2)  --------->AHL20(2)       <---------YAB1<---------ARR11(3)< --->ICU4             <---------AHL20(2)   --------->ICU4     <---------YAB1<---------ZAT18  <-------   attaaaatgttcattccaaagttttttattttgtctccctaagtatttattaacttgtctaattttgattttgattggtccacatatctttttaatttta  3837800                                                                                   ----------->HVH21                                                                                  <-----------HVH21                                                                                 --------->bZIP60(2)                                                                                 --------->O2                                                                                 <---------At4g35610                                                                                 --------->At4g35610                                                                                --------->MYB59                                                                                >>>>>>>GRF7                                                                             <-----------HVH21                                                                            --------->ALFIN1     ---------->DOF2                                                      <---------ANAC58 --------GT1                                                         --------->TOE2(3) ---AHL20(2)                                       --------->At4g35610    <---------ANAC58 <---------DDF1 ->AHL20(2)                        ----------->GT1 <---------At4g35610------>ZmHOX2a(1)   <---------ETT(2) ----------DOF2       --------->ARR14(2)<-----------GT1      ================HOX2a_HOX2a  --------->ETT(2) --AHL20(2) >>>>>>>>>TBF1  --------->ANAC46       *TSS       <------ZmHOX2a(2) <-----------RAV1(2)   tactttagaaagaagaagaaacagaatacacaaaacatagttaaaccacattaagctgtctcgatcccattccttagggtgtcaggtcacggtcgacata  3837900                                                          <------NtERF2                                                          --------->ATERF1(1)                                                         <---------ATERF1(1)                                                         ------>NtERF2                                                        <---------DEAR3(1)                                                        ----------->HVH21               <---------At4g35610                                                        --------->DEAR3(1)              --------->At4g35610                                                       --------->ATERF1(1)              --------->ZAT2                                          --------------------->WRI1                  <---------WRKY12                                       --------->LBD16------>NtERF2                <------MYB46(1)                                     <---------LBD16  <---------ATERF1(1)          <------MYB83                                   <-----------GT1    --------->LBD16             --------->SPL7                              <---------ANAC58       <---------DEAR3(1)          <---------MYB52(1)                              <---------ANAC58   <---------GLK1(1)              --------->LBD16                           --------->ARR14(2)    <----------DOF2         <---------ALFIN1                  <---------ICU4 <-----------HVH21  <---------LBD16      --------->AtMYB61       <---       <-----------GT1     <---------ARR14(2)  <---------ZAT18         ------>NtERF2<-----------HVH21     <----------DOF2  --------->MYB52(1) --------->ARR14(2)           --------->RAP2.6(2) <----------DOF2  <---------ARR11(3)  <---------At5g28300<---------ARR14(2)          --------->MYB46(3) <---------ZAT2  --------->ARR11(3) <-----------GT1 <-----------------AGL1<---------ANAC46   <---------LBD16 <------   aaaacatcttttccatccaatatttaccggtttcgtttcaccggatttgggctctccggcgacggagaatagccaccatctccgtaggtcagctttcttt  3838000                                                                  ------>NtERF2                                                                  --------->LBD16                                                                 --------->DREB2C(2)                                                                 --------->DEAR3(1)                                                                 <---------ATERF1(2)                                                                 --------->RRTF1(2)                                                                 --------->RAP2.3(3)                                                                 --------->RAP2.6(2)                                                                 --------->ATERF1(2)                                                                 --------->RAP2.3(2)                                                                --------->RAP2.3(1)                                                                --------->ERF1                                                                --------->ATERF1(1)                                                                <------NtERF2                                                                --------->RRTF1(1)                                                                --------->ORA47(2)                                                                <---------LBD16                                                               <---------RAP2.3(1)                                                               <---------At4g35610                                                               <---------ATERF1(1)                                                               <------NtERF2                                                               --------->At4g35610                                                              <---------DEAR3(1)               <-----                                                      <---------GLK1(1)                        <-----                                                      --------->ZAT2                           <-----                                                      <---------ZAT2                         <-------                                                      <---------At4g35610                    <-------                                              <---------REM1(1)------>NtERF2                 <-------                        --------->ARR11(3)    --------->ALFIN1--------->DEAR3(1)             <------MYB83                       <---------CCA1(2) <---------TOE1(1)    <---------ATERF1(2)     <--------------              ------>ZmHOX2a(1)   --------->ATHB12    --------->At4g35610             --------------- <-----------GT1     --------->YAB1 <---------WOX13(1)--------->GLK1(1)  --------->AHL20(2)  <------MYB46(1) ---------------------ANAC81     <---------YAB1     <---------ZAT18<------NtERF2     <--------------- ----DOF2<----------DOF2<---------ARR11(3)<------NtERF2       --------->ATERF1(2)    <---------------   ttttttcttctctttcctctctctcatatctctgtatgattggccgaggtgtagggagctctggccgccggcaaaaaaaataggttaactaaatttggtg  3838100  Previous    Next  AGI:  At1g11390.1    Description:  ABC1 family protein. similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G61640.1); similar to H0112G12.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67057.1); similar to putative 62.8 kDa protein [Oryza sativa (japonica cultivar-group)] (GB:AAL87193.1); similar to Protein kinase-like [Medicago truncatula] (GB:ABD32343.1); contains InterPro domain ABC-1 (InterPro:IPR004147); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 3834459    to: 3837629    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g11400.1    Description:  PYM (PARTNER OF Y14-MAGO); protein binding. similar to unknown [Populus trichocarpa] (GB:ABK95693.1); contains InterPro domain Exon junction complex, Pym (InterPro:IPR015362) Range:  from: 3837850    to: 3840207    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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