Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           ----------->GT1                                                                      <---------YAB1  <------NtERF2                        --------->ARR11(3)               <---------ARR14(2)          --------->LBD16                        <---------ARR11(3)               --------->ARR14(2)          <---------RAP2.6(3)                  <---------TOE2(3)      <---------ARR11(3)  --------->At4g35610    --------->ANAC46             --------->GLK1(2)           --------->ARR11(3) --------->DEAR3(1)      --------->RAP2.6(2)        <------ZmHOX2a(1)  <----------DOF2             ----------->ARR10           <---------LBD16  <   gaagacgagaggaagaatttgacgaagttctttcagagaagaacatctctcaagaagaagagccgctggatgctcatagacattagccggaatgtaattt  3793800                          <---------TGA1a                          <---------ANAC46                     <---------ANAC58                        --------->ZAT14                     <---------ANAC58                        <---------ZAT18            ----------->TGA1                                 --------->ZAT18            ----------->HVH21                  --------->MYB52(1)         <---------At4g35610         --------->DAG2   <---------O2         <---------ARR14(2)         --------->At4g35610        ============================bZIP_DOF  <------ZmHOX2a(1)----------->RAV1(1)                  -        ---------->DOF2----------->HVH21    <---------TOE2(3)<---------ZAT14      <----------DOF2 --- ---------LBD16   <---------DEAR3(1)<---------TOE2(3)   <---------ZAT14 <---------ZAT18   <---------HSFB2a(2)   ctctcggagagaaagtgacgatggcgagacgggggattagggatttgaggaacggtagagaactgcaccaattgtgagctcatgcttttgttctgcaaaa  3793900                                                                                       --------->HSFB2a(2)                                                                          --------->ANAC55(2)                                                                          <---------ANAC58                                                                          <---------ANAC55(1)                                                                          <---------ANAC55(2)                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                          <---------bZIP60(2)                                                                          --------->TGA1a                                                                          --------->O2 <---------HSFB2a(2)                                                                          <---------bZIP60(1)                                                                          <---------O2<---------LBD16                                                                          --------->bZIP60(1)                                                                       ----------->TGA1<---------ANAC46                                                                       ----------->HVH21--------->LBD16                                          ------------>CBF       ----------->HVH21 --------->KAN4(2)          ------------>CBF               --------->ANAC46      <------------CBF--------->At4g35610     <----------DOF2               <----------DOF2         <---------WOX13(1)  <---------At4g35610     ------>ZmHOX2a(1)             <---------DAG2         <------------CBF<---------TGA1a -------->WOX13(1)                 =================================================bZIP_DOF --------->CBF                  <-----------GT1          --------->ATHB12----------->STF1        ----   atcaatcctttagacaattccttcttcgaagtatatactttatccacaatgtctggacttgattgaattgacagtgacgtgagcttattccggagaagaa  3794000                                                                                         --------->YAB1                                                                                     <---------------AGL15                                                                                     --------------->AGL15                                                                  --------->YAB1    -----------------                                                                 <---------ATHB12   -----------------                                                               --------->WOX13(1) --------->ANAC58                    <---------At4g35610                      --------->WRKY18(1)  --------->ANAC58  -  <---------TGA1a   ----------->GT1                     <----------DOF2----------->GT1 --------->ICU4  <---------ANAC46  --------->At4g35610            <-----------------AGL1         --------->RAP2.6(2) ------->GT1      <-----------RAV1(2)              ----------------->AGL1   ---------->DOF2        --   ggtgaagtgagtcactcttctcaggtgaattaagaccaagtcgtaatagacgggccaactttggtcaatcaaaccgtagaaagaccgccattaatagaaa  3794100                                              <---------TGA1a                                              --------->TGA1a                                              <---------O2                                              =================bZIP_DOF                           <--                                              --------->O2                                        ---     ------->TEIL                     --------->ZAT6                                             <---  <---------YAB1     --------->YAB1 --------->MYB52(1)                                        ------- >AGL2  <----------DOF2   <---------YAB1    <---------ALFIN1                                  <------ >AGL3  ================================================bZIP_DOF ------------>CBF            -------- -------->YAB1<---------ANAC58     ----------->HVH21<----------DOF2                        --------->GLK1(2) ------->ICU4 <---------ANAC58  <---------ZAT6=================bZIP_DOF       <----------DOF2<-------   aatgatgaatcttttagcttgcatcatcatcttagaggtaacagtgccacttgactttgacatttctaacaatatttggacttttctcttgagaatttaa  3794200                                                                                    <---------YAB1                                                                                  <---------------AGL15                                                                                  --------------->AGL15         <---------ICU4                                                          <-----------------AGL2       ----------->RAV1(1)            *TSS                                       ----------------->AGL3      --------->ANAC46     --------->ANAC55(2)                                   <-----------------AGL3    --------->AtMYB61      <---------ANAC55(2)                               <----------DOF2 -------ICU4               --------->ANAC46      --------->TOE2(3)          ------>ZmHOX2a(2) ------>YAB1              <---------TOE2(3)     ----------->GT1            <------ZmHOX2a(2)       <- ------ATHB12             <---------TOE1(3) <---------YAB1                --------->AGP1           <- -->AHL20(2)             --------->MYB52(1)------>MYB83                   --------->ARR11(3)    <---- ---AHL20(2)          <---------ANAC55(2)  ------>MYB46(1)                <---------ARR11(3)  <------ ->AHL20(2)           --------->ANAC55(2)  -------->P  <---------ICU4   ----------->ARR10    ======== --AHL20(2)      <---------GLK1(2)    <---------ARR11(3)  <-----------GT1--------->GLK1(1)   ------>ZmHOX2a(2)   tcatcaccacaacattacagaatcacttaacgtaactcaagaccctaccattgttaattgttacattcaatgctgagatctttgctattaatagatcggt  3794300                                                 ------>MYB83     <-----------RAV1(1)                      ----------------->AGL1 --------ANAC46                               --------->ANAC46 --------YAB1                               --------->REM1(1) -----MYB52(1)                          <---------STY1(2)             <---------ZAT2 ---MYB46(3)    <------ZmHOX2a(1)---------->DOF2 ------>MYB46(1)      --------->ZAT2--------->CCA1(2) ======================HOX2a_HOX2a      --------->STY1(2)            --------->GLK1(2)          <----   tgtgtttgtgttgtttcaggacatattaagaacacaaaagctagctacaccaaattgggactgttcttgagaagctggtactgaagctatgagacttcat  3794400                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                        --------->ANAC58                                                                              <----------DOF2   <----                                                                            <-----------------AGL1                                                                          <----------DOF2      <-----                                                                       --------->ARR11(3)      ------           ------>ZmHOX2a(1)          <---------ANAC58                 <---------ARR11(3)--------->At4g35610 --------->At4g35610                  <---------ANAC58         <-----------RAV1(2)      --------->ANAC58 <---------ZAT2                   <---------ANAC58<---------ANAC58 ---------->DOF2 --------->HSFB2a(2) -----YAB1 <----------DOF2        <---------ANAC58<---------ANAC58<------ZmHOX2a(1)<---------HSFB2a(2)   gagagctcgagtccttttgtttgtattcttgtactgtcttgcttcttcttgagcgtgtctctggctcaggaaagagctttcttttctggcaagctcaatg  3794500  --------->LBD16 --------ATHB5 ---->ATHB12                            <---------MYB52(1) -----ICU4                            <------MYB46(1) ---->YAB1                      <---------TOE2(3) ----ATHB1          <----------DOF2   <------MYB83                    <---------ARR14(2) ----ATHB12        <---------ANAC58  --------->MYB59  <---------MYB52(1)            ----------->GT1 --->ICU4          <---------ANAC58 <-------TEIL    ----------->GT1   --------->ARR14(2)   attccgagacgattgtctctagctttcggacattcaggttcggtttcttcagccctgttaattccacaagtcgatatgctggtatatggtataacagtgt  3794600                                                     <---------LBD16                                              <---------ICU4                                              --------->ATHB12                                              <--------ATHB1                       --------->ARR11(3)                                              --------->YAB1                       <---------ARR11(3)                                         ==================HOX2a_HOX2a            <---------GLK1(1)                    <--------P   --------->CCA1(2)  ------>ZmHOX2a(1)   --------------->AGL15  <-----                   <---------ANAC58      <------ZmHOX2a(2)              <---------------AGL15  ------                   <---------ANAC58      <---------ATHB12              <-----------------AGL1  <-----              --------->CCA1(2)--------->YAB1--------->ICU4         --------->ARR14(2)        <------         ----------->GT1    ---------->DOF2  <---------ATHB12  <-----------GT1    --------->GLK1(1)   ttctgtacaaactgtgatatgggttgctaacaaagataagccgatcaatgattcctctggagttatttcggtttctcaagatggaaatcttgtagttacg  3794700  Previous    Next  AGI:  At1g11290.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G57430.1); similar to hypothetical protein OsJ_019065 [Oryza sativa (japonica cultivar-group)] (GB:EAZ35582.1); similar to Os06g0112000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64588.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 3791454    to: 3793883    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g11300.1    Description:  carbohydrate binding / kinase. similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11330.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45332.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17785.1); similar to hypothetical protein OsJ_029070 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45587.1); contains InterPro domain Apple-like (InterPro:IPR003609); contains InterPro domain Serine/th Range:  from: 3794238    to: 3800719    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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