Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  ------------>AtMYB77    <---------ANAC58             --------->At4g35610                         --------->YAB1                 --------->ANAC55(2)             <---------At4g35610                   --------->YAB1           <---------ANAC58       xx     --------------->AGL15                      --------->GLK1(1)           <---------ANAC58       <-    --------->TOE2(3)    --------->GLK1(2)      <---------CCA1(2)       <---------At4g35610   <------NtERF2 ----HSFB2a(2)      ---------->DOF2             <---------GLK1(1)    <---------MYB52(1) <---------ANAC58   gacaaatctaaatttagctaaacaaagaatttgagactaatctataacgcatatcagaataagaaggaacagttagatgcttacattcttacgggcctcg  3767900                               <---------At4g35610                         <---------At4g35610               --------->HSFC1(2)   --------->At4g35610               <---------HSFC1(2)   --------->ZAT2       --------->LBD16   <---------ZAT2                                                      ------>MYB46(1)       ------>NtERF2    ------>ZmHOX2a(1)                                                    ------>MYB83     <---------LBD16    <-----------RAV1(1)  <------------------------ANAC81             ------>MYB83   --------->ARR14(2) ----------->RAV1(2) <----------DOF2    ------>ZmHOX2a(1)           ------>MYB46(1)   <---------ARR14(2)------>ZmHOX2a(1)    <------------------------ANAC81                -------->P xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------At4g35610<<<<<<<<<TBF1       <-----------HVH21--------- ------TEIL ---------->DOF2 <---------At4g35610  <----------DOF2          --------->ANAC46--------->MYB46(3)   attcgtttccgcctaaaagcttcctcctgctgcttctgagcttcctttcttcttttcttcttcctcttgtgaaaaccagtcacaaaatccctaccaacaa  3768000                                <---------ARR14(2)       ----------->RAV1(1) --------->AtLEC2                                <---------YAB1   <--------      --------->ANAC58    --------->TOE2(2)                                <---------AHL20(2)      --------->ANAC58    --------->TOE1(2)              --------->At4g35610               ------>ZmHOX2a(2)      --------->ANAC46   --------->YAB1     <---------LBD16     ----------->GT1           <------ZmHOX2a(2)    --------->ANAC46     <---------ICU4 <---------GLK1(2)<---------At4g35610             --------->ARR11(3)   ------->GAMYB        <---------ATHB12--------->ARR14(2)    ---------->DOF2            <---------ARR11(3) -->RAV1(1)           --------->YAB1   --------->HSFB2a(1)    --------->ZAT14            --------->AGP1   aacaacacacaccagaaaactcactaatcatgcgaattcaaagattcccagattgaatcagcagtaaagttagaatttttattgtacttgagatctttct  3768100                                                                                       <---------ICU4                                                                                   ------>NtERF2                                                                                  <---------ALFIN1                                                                                  --------->DEAR3(1)                                --------->At4g35610                       --------->ZAT14                                <---------At4g35610                       <---------ZAT14                                <---------ZAT2                    <------NtERF2--------->ANAC58                                --------->ZAT2                    --------->ATERF1(1) ------>ZmHOX2a(1)                              <---------ZAT18                    <---------SPL7--------->ANAC46                         <---------ANAC58                      <------NtERF2------->TEIL        -----            --------->ALFIN1 <---------ANAC58                 <---------ORA47(2)<---------ATERF1(1)         <---------DEAR3(1)  <---------ANAC58         --------->ZAT6      <---------ZAT18   <--------  ---------->DOF2 <----------DOF2       >>>>>>>>>>>>>>>>>LFY <---------RAP2.3(3)------>NtERF2   ----- --DOF2--------->CCA1(2) <---------ANAC58       ------->TEIL <---------DEAR3(1)--------->ANAC58 -----   cgtcaaaagagacggtgaggcttttgttcttgcgagctctcttcccaatgtgcctagcactagtcggcgtagccagtgaacccgcctcctcattatgcaa  3768200                                <---------ARR14(2)                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                           <---------ARR14(2)                           --------->ARR14(2)                 --------->HSFC1(2)                 <---------HSFC1(2)    <-----------HVH21  =============HOX2a_HOX2a            <------MYB83    <-----------TGA1   ------>ZmHOX2a(1)     <-----------RAV1(2)     ----------->GT1   --------->ANAC46   <-----------------AGL1<-------TEIL  <---------TOE2(3) ---->ANAC46   --------->ARR14(2)          <-----------HVH21      <---------ANAC58             >>>>>> -YAB1         <---------ARR14(2)          <---------ARR14(2)     <---------ANAC58  --------->ANAC58 ---->ANAC58   <---------GLK1(2)--------->ARR14(2)        --------->MYB59           --------->ANAC58 ---->ANAC58   <---------ARR11(3)        <---------MYB46(3)<------MYB46(1)   --------->YAB1   *TSS>>>   gcctcccgtcatcaccagatacttcctccgatcggaaacgaagcggttcaggtcaaaaattaggttttgcgaggtttaatcaaaacaagcctatgaagaa  3768300                                     <----------DOF2                            --------->AHL20(2)                            <---------AHL20(2)         ---------->ID1                            <---------YAB1         <---------ANAC58          --------->At4g35610 <------------CBF     <---------ANAC58      <------------CBF       <------ZmHOX2a(1) <----------DOF2    <----------DOF2  --------->YAB1    <----------DOF2 >>>TBF1  <---------At4g35610--------->ATHB12   <---------TOE1(3)  ----------->GT1           <------- >>>>>>TBF1 ----------->GT1--------->AHL20(2)   <---------TOE2(3) ----------->GT1--------->WRKY45   -   gaagaagcaggaagcagaaaaaatggccttttaattgggctttaggctttaaggcttggcccattataagggtaatattgtctttgactaaatggagcta  3768400                                               --------->DAG2                                              ---------->DOF2                                            <---------------AGL15                                            --------------->AGL15                                           ----------------->AG                                           ----------------->AGL2                                           ----------------->AGL1                                           ----------------->AGL3                                           <-----------------AGL1           --------->DAG2                  <-----------------AGL3          ---------->DOF2  =================================MADS_MADS      <---------TOE2(3)    ==================================MADS_MADS ----------->GT1           --------------->AGL15                                               ------ <------MYB46(1)           <---------------AGL15     <---------ANAC46                     ------>MYB83 <------MYB83             <-----------------AGL2     <---------ANAC58                     ------>MYB46(1) --At4g35610              <-----------------AGL1     <---------ANAC58                   --------->AtMYB61 -------->MYB59        --------->WRKY38(1) <-----------------AGL2                    <-----------GT1   atttggttaagaaaaagttatgccattgactaaatttggacaattaccaaaagtggcttgtgtctctcgtttctaacaaaacaaaataaaccttcccaca  3768500                      --------->YAB1                                             <------ZmHOX2a(1)             <----------DOF2                                                  <---------At4g35610          <-----------GT1      --------->AHL20(2)                             --------->At4g35610   ---------->DOF2<-----------GT1                                ------>ZmHOX2a(1)--------->SPL7 --->ANAC46---------->ID1--------->YAB1            ------>ZmHOX2a(1)      --------->AtLEC2        <--   aaactaaaagtttttctttttcactcatcaaaataaaacaaaaaaaaaacttcctagcatcttcttcctcttactcatgcagaggacgacgatggtgatg  3768600             <------------CBF        <---------ICU4       --------->ICU4       <---------YAB1     <---------ICU4     --------->YAB1                                                                                 -    <---------YAB1<----------DOF2                                                               -----  --------->YAB1 <---------ANAC58                                                       --------->ANAC58  <---------ICU4 <---------ANAC58                                                       --------->ANAC58 -----TEIL------------>CBF            ---------->DOF2 ---------->DOF2              <---------ICU4 ---   ttcatcatcataatcaattgcttttgaacaaaaacaaaatcaaagaaaaaaacacataaaaccccaaaaaaaaaacttctgtacataattaagccagaga  3768700                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                     --------->WRKY18(1)                                                                                   <---------At4g35610                                                                                   --------->ANAC58                                                                   <---------LBD16 <------MYB46(1)                                                                  --------->ALFIN1 --------->At4g35610     ---------->DOF2                                            --------->ZAT2     <------MYB83 -------->AHL20(2)                                              <---------ZAT2   <-----------RAV1(2) ----->DOF2       --------->ICU4                                ----------->RAV1(2)--------->ANAC58 -------->GT1----------->GT1 --------->AHL20(2)      <---------ARR14(2)       <---------TOE2(3)    --   aagaaaataaagacagagtaaaaatgaacgatttattctctaattcattcaagaagaaccaggctcaactgggggatgttgaggcaggtcaagaaacgat  3768800  Previous    Next  AGI:  At1g11240.1    Description:  similar to hypothetical protein OsI_011255 [Oryza sativa (indica cultivar-group)] (GB:EAY90022.1); similar to Os03g0353500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050128.1); contains domain PTHR14577 (PTHR14577) Range:  from: 3766754    to: 3768294    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g11250.1    Description:  SYP125 (syntaxin 125); SNAP receptor. Identical to Syntaxin-125 (SYP125) [Arabidopsis Thaliana] (GB:Q9SXB0;GB:Q4PT35); similar to SYP124 (syntaxin 124), SNAP receptor [Arabidopsis thaliana] (TAIR:AT1G61290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24123.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 3768724    to: 3769706    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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