Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 ------>ZmHOX2a(2)                                                              --------->GLK1(1)                                                              <------ZmHOX2a(2)                                                             <---------AGP1                                                             --------->AGP1                                                             --------->ARR14(2)                                                             <---------ARR11(3)                                                     <---------ATHB12                                                   <---------At4g35610                                                   --------->At4g35610                                                 <---------WRKY38(1)                                               <-----------HVH21  ----------->RAV1(1)                         ------->GAMYB  --------->ARR11(3) ------->ANAC58                  <---------YAB1--------->At5g28300 ------->ANAC58          <----------DOF2   <-----------GT1  <---------CCA1(2) ------->ANAC46        ------->TEIL        --------->MYB52(1)<---------ARR14(2) ------HVH21     --------->TOE1(2)  ------->TEIL <---------WRKY12   cacaccacaaaaacacacacatacgaacttttgttatgaatcttataacggtcaaatgactcagatctctaccaaaaaaacttggaatttgatatgccat  3752400                                                             ---------->DOF2--------->AHL20(2)                     --------->At4g35610                   <---------AHL20(2)                --------                 --------->ARR11(3)               ---------->DOF2       ------>ZmHOX2a(1)    <-------                 <---------ARR11(3)            <---------ANAC46         <---------YAB1      <--------                --------->YAB1                 <---------ANAC55(2)    --------->YAB1    <------MYB83               --------->ICU4                 <-----------------------TaNAC69(2)        <------MYB46(1)               <---------YAB1                <---------DOF5.7(2)   --------->WOX13(1)  <---------TOE1(2)             --------->YAB1         --------->MYB59       --------->AHL20(2)<---------AHL20(2)   tagacatgtttgtattcatgatcatctacatgagatgttaggcatggtaacgtatagcaatttaaaagtcaatcctaattaaaaatttgtaggtatatct  3752500                                                                  ----------->RAV1(2)                                                                  <---------ANAC55(2)                                                                <-----------GT1                                                   <------ZmHOX2a(2)                         <-------                                     <---------ANAC58       --------->AHL20(2)           --------->GLK1(2)                          --------->TOE2(3)       --------->ARR11(3)              --------->ANAC58 ->ARR11(3)          <---------KAN4(2)            <---------ARR11(3)              --------->ANAC46 --ARR11(3)         --------->YAB1   <---------ANAC58     --------->TOE2(3)       --------->ANAC58 -CCA1(2)    <----------ID1          <---------ANAC46--------->TOE2(3)        <---------HSFB2a(2)   <   cactaatacatatataagacaagaataaccaaaatagttgcttcaaacaatagatcattaacttaattacctgagcaattctacaagtaagaatatgacc  3752600                                                                                             <-------                                                                                             --------                                                                                             <-------                  XXXXXXXXXXXXXXXXXXX>MIR156G                                           ------>NtERF2          <---------GLK1(2)                      ------>MYB46(1)                     <---------ATERF1(1)         <---------At4g35610                     ------>MYB83                  ---------->DOF2     --         <---------ZAT2      ------>MYB46(1)   <---------MYB111(1)          ------>ZmHOX2a(2)--------         --------->ZAT2 --------->MYB52(1)    --------->ANAC55(2) <---------ANAC46   --------->At4g35610 ----GT1 --------->At4g35610 ------>MYB83  --------->ZAT14    -------->P  <---------ARR11(3) <------- ----------DOF2   XXXXXXXXXXXXXXXXXXX>MIR156A-F<---------MYB59------->TEIL--------->ARR11(3)<--------   ttctttgctccagcttcggacagaagaaaccgaacacaaaatcagtatacctaatacaagaatcaacctcgtggatgatctaaaagccgatgccatatct  3752700 --ARR14(2)                  <----------DOF2 ->ARR11(3)         -------->HAHB4                               --------->TOE2(3) --ARR11(1)         --------->YAB1                             -------->P -------->DOF2     --------->ICU4          <---------ARR11(3) ------->GAMYB ->ARR14(2)        <---------YAB1          --------->ARR11(3)--------->MYB46(3) --ARR11(3)      --------->YAB1       <---------AHL20(2)     <---------MYB111(2)*TSS -CCA1(2)       <---------AHL20(2)   --------->YAB1        --------->YAB1      ---------->DOF2   tcaaagtttgaaacttatataatgataaactcttttgtataaaaatgtcttctcttgtctataacaacctcatcgaatttgaaaagaaaacacacagaga  3752800                                                                                   --------->ARR11(3)                                                                                   <---------ARR11(3)                                              --------->ANAC58                   --------->ANAC58                                              --------->ANAC58                   --------->ANAC58                                           --------->LBD16                   --------->ANAC58                                         <---------LBD16                     --------->ANAC58            --------->CCA1(2)      <------MYB83                              --------->ANAC46      <-           <----------ID1         --------->MYB46(2)                   <---------ANAC58  <---------ANAC58  <---------YAB1                  --------->MYB59----------->RAV1(1)   <---------ANAC46  <---------ANAC58  ----------->TBP      ------->TEIL<------MYB46(1)                     <---------ANAC58  <---------ANAC46   gattataaatagagagacaagaatggacttacaagttaggttaaccggaagcaacatatatgatgttgagtttgtgtgcaagcaagacattgcgagtctc  3752900                                                                               --------->KAN4(2)                                                               --------->AHL20(1)           ---------->DOF2                                     --------->AHL20(2)      <---------------AGL15                      ---------->DOF2<---------AHL20(2)  ------>ZmHOX2a(1)      --------------->AGL15              --------->TOE1(2)     <---------AHL20(1)  <---------ANAC46 -      ------>ZmHOX2a(1)                  --------->TOE2(2)     <---------AHL20(2)  --------->TOE2(3)< --------TOE1(2)      ---------->DOF2   --------->YAB1  ----------->GT1 ---------->DOF2     <--------   atacgttcctcataaaagttgacaaaaagaacacgagtataaacataagatgaaagagtcgtcaatttattagttaaagcacattccttatactcttata  3753000                                                <---------AHL20(2)                                                --------->AHL20(2)                                            --------->AHL20(2)                                            <---------AHL20(2)                                  <---------ARR11(3)                                  --------->ARR11(3)                                  <---------ARR11(1)                                  <---------ARR14(2)                                  --------->ARR14(2)                                  <-----------ARR10                                 <---------CCA1(2)   --------->MYB52(1)                                 --------->GLK1(1)   <-----------GT1                          --------->ALFIN1  <---------ICU4                          <-----------RAV1(1)  <---------AHL20(2)                        <---------TGA1a     --------->ATHB51                        --------->TGA1a     <--------ATHB1                  <-------MYC3 <---------ANAC58<---------AHL20(1)      ------->GAMYB     --------->O2       <---------ATHB12   <-----------GT1------->MYC3 <---------ANAC58--------->AHL20(2) -------->ANAC55(2)     <---------O2       <---------ATHB51 ---------ANAC55(2) <-----------HVH21      --------->ICU4                                         <-- -YAB1============================MYC_MYB--------->YAB1        <---------ICU4  ------->TEIL----------   gtatgtaacagcatcatccatgtgtcatgtgtggcatatcttacaataatttaattaacgcctaatcttgtcaaacatttgcatcttcttaacttgttat  3753100                                         --------->LBD16                                        --------->ANAC46                                        --------->RAP2.6(2)                                        --------->ANAC58                                        --------->ANAC58                                     --------->MYB52(1)                                     ------>MYB83                                     ------>MYB46(1)                               <<<<<<<<<CBP60g                          <---------AHL20(2)                                       <<<<<<<<<SARD1                          --------->AHL20(2)                                      ------>MYB46(1)           <---------ANAC58        --------->AtMYB61                              ------>MYB83           <---------ANAC46        <---------MYB59                              <---------MYB59 <----------DOF2         --------->AHL20(2)              --------->MYB46(3)  <-----------GT1 -------AHL20(2)  <-----------GT1>>>>>>>>>>MYB80      ------>ZmHOX2a(1)<---------TOE2(3) ->GT1     <---------ANAC58--------->WOX13(1)        <---------MYB59<---------AHL20(2)      ---------   tttctttgttcttgcttgtttcacaaaataaatcaaaccaaaccgcaatttaagtcctaaccaattttgttttaatgaataaccaaatttcaattcggtt  3753200                           ------>NtERF2                           <---------RAP2.6(3)                           --------->ANAC58                           ----------->GT1                           --------->LBD16                           --------->ANAC58                          --------->RAP2.6(2)                          --------->ATERF1(2)                          <---------ATERF1(2)                         --------->RAP2.6(3)                        <---------ATERF1(1)                       <---------SPL7                     --------->DEAR3(2)                                                          <---                   ------>MYB46(1)                                                               <---                   ------>MYB83                                                                 -----                   --------->MYB52(1) <---------LBD16                           <---------At4g35610 <                 <---------MYB59<---------MYB52(2)         <---------ANAC58     --------->At4g35610 -               >>>>>>>>>MYB2<------NtERF2         <---------ANAC46        <------ZmHOX2a(1)     -----  <----------DOF2--------->AtMYB61--------->MYB52(1)       <---------ANAC58<---------ARR14(2)  <----- >MYB59  --------->ANAC46--------->SPL7     <------ZmHOX2a(1)       ---------->DOF2       <----------   cgaacttttaaacggaaaaccaaaccggccggcaaataacgacggaggacttgggtatatttcttggtcgcaaagaggactcggctgattttgaaccggt  3753300  Previous    Next  AGI:  At1g11190.1    Description:  BFN1 (BIFUNCTIONAL NUCLEASE I); nucleic acid binding. similar to ENDO4 (ENDONUCLEASE 4), T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease [Arabidopsis thaliana] (TAIR:AT4G21585.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24603.1); contains InterPro domain Phospholipase C/P1 nuclease, core; (InterPro:IPR008947); contains InterPro domain S1/P1 nuclease; (InterPro:IPR003154) Range:  from: 3750066    to: 3752780    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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