Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->MYB52(1)                                                                                         ---------->DOF2                                                                                        ------->GAMYB                                                                                   --------->SPL7                                                                                ----------->GT1                                                                               --------->ANAC46                                                                               --------->ANAC58      --------->At4g35610                                                      --------------->AtSPL3      <---------At4g35610                                                      --------->ANAC58     -      --------->ZAT2                                                          <---------------------WRI1      <---------ZAT2                                                          --------->SPL7  <------      ----------->RAV1(2)                                    ------->TEIL   <---------SPL7---------->DOF2    <-----------RAV1(2)                                 ------>NtERF2      <---------ANAC46   <------   <---------At4g35610                                 --------->LBD16     <---------ANAC58   <------  <-----------HVH21         <------NtERF2       --------->RVE1(1)          <---------ANAC58--------->DAG2 ----->ZmHOX2a(1)          ------>NtERF2       --------->ARR11(3)         <---------------AtSPL3    < ------>YAB1             <---------MYB52(1)    <---------ARR11(3)         <---------------AtSPL8<---- ------ATHB12           --------->LBD16        --------->GLK1(2)          --------------->AtSPL3----- -----ARR14(2)        <---------LBD16         --------->CCA1(1)         --------->DAG2  --------->AtMYB61 ---->ARR14(2) --------->AHL20(2)             --------->RVE1(1)       ---------->DOF2  --------->MYB46(3)   tcctcatcagctgaagtttaaatctccggtggccaaactaaatccaaaaaatctctcccgacgaattttggcaaaaggcgtacggtacaaccaaaggcgg  3745400                                                                                 ----------->HVH21                                                                               <---------DEAR3(2)                                                                              --------->ETT(1)                                                                              <---------At1g77200                                                                              <---------DEAR3(1)                                                                              <---------ANAC46                                                                              <---------DEAR4(1)                                                                              <---------DREB2C(2)                                                                         --------->O2                                  --------->At4g35610                    <---------ANAC58       <---------ARR11(3)         <---------At4g35610                    <---------ANAC46  <---------REM1(1)          --------->AHL20(2)                          <---------O2               - -------->At4g35610          --------->ATHB51                            <---------ANAC58         <-- ---ANAC46            --------->At4g35610                             <---------ANAC46            --- ---ANAC58            --------->ZAT2----------->HVH21     ----------->HVH21 <-----------HVH21  ------ ---ANAC58            <---------At4g35610             <---------LBD16 <---------ANAC58   ----------->HVH21 ---------At4g35610 <------ZmHOX2a(1)    ----------->GT1--------->LBD16<-----------HVH21--------->LBD16 --NtERF2    <---------AtLEC2--------->ATHB12    <---------GLK1(2)    <---------ANAC58 <---------ANAC46 ->NtERF2 <----------DOF2    <---------AHL20(2)--------->AHL20(2)<------ZmHOX2a(1)---------->DOF2<---   gcagatgtagaactttcatggaggagctgaattatttgctgaccggcaaaaaattctccggtgaagaggattgcgtcgtgtcggtgaagccgtgaaggtg  3745500                                              <-----------TGA1                                             <---------bZIP60(1)                                             <---------TGA2(1)                                         ------->MYC2                                         ------->MYC3                                         <-------MYC2                                         <-------MYC3                                         -------->ABF1                                        <---------ANAC55(2)                                        --------->ANAC46                                        <---------O2                                        <---------TGA1a                                        --------->O2                                        --------->ANAC55(2)                                        --------->TGA1a          <---------ARR11(3)      <---------ANAC58          --------->ARR11(3)  ------->MYC3   --------->bZIP60(1)  <---------ICU4      --------->TOE2(3)       <-------MYC3   <---------ANAC46     --------->ATHB12 ---------->HVH21            <---------O2------->MYC4        <---------AHL20(2) -------ANAC46====================================MYC_MYB    --------->AHL20(2)--------->ZAT18 -------->GT1 -------->P     --------->O2<-------MYC4       --------->YAB1     <---------ZAT18 --->ALFIN1 ------>ZmHOX2a(2)--------->ANAC46--------->TGA2(1)  <---------TOE2(3)  <----------DOF2 --------------------TaNAC69(2)   <---------ANAC58<---------At4g35610     --------->ICU4       <-----   ctgtgaaacgttgatctaccctgcaatttccacgttgcatacacgtgtcgtcatcttatctattttaatgtttgcaattagtgggcttttgacctgcagt  3745600                                                                                        --------->YAB1                                                                                    ------>ZmHOX2a(1)                                                                               --------->GLK1(1)                                                                               <---------GLK1(1)                                      --------->GLK1(2)                    --------->YAB1                        <---------ANAC58                   ------------------------>ANAC81                 <---------ARR14(2)   <---------ARR11(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->ARR14(2)   --------->ARR11(3)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->AHL20(2)      <---------MYB52(1)<---------ANAC58                xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2) --GAMYB      --------->YAB1   <---------TOE2(3)<----------ID1        --------->AHL20(2)--------->AHL20(2)   tgtactctgttatgaagcatatttgggcttgttaatgaaaaatctgtttgacgacaaaaaaaaaaaaaaaaaaaaaatcagaaatcctaataaaaaaatt  3745700                                                                                         <----------DOF2                                                                                        ------>ZmHOX2a(2)                       ----------->GT1                                                --------->ARR11(3)               ------->TEIL                                               *TSS <---------TOE2(3)      --------->AHL20(2)           <------------CBF    <-----------GT1    <------------CBF   ----------->GT1--------->AHL20(2)                  <-----------GT1   --------->ICU4<---------ARR11(3)  ----------->GT1 <---------AHL20(2)        <----------DOF2     --------->LBD16<---------TOE1(3)    <   ccaaaggttaaaatatgaatttaaatggataaatacaaattgttgtcttttcagttttcccccttccgaaggtcagaattgaaggtttgatctttgttgt  3745800                                          <------ZmHOX2a(2)                                       <---------YAB1                                    <---------MYB52(1)                                   <-------GAMYB                                  <---------MYB46(3)                               <------MYB83------>ZmHOX2a(2)              <----------DOF2  <------MYB46(1)         --------->CCA1(2)     <---------MYB46(3)                             <----------DOF2 <------       --------->CCA1(2)      <---------AtMYB61                               ------>ZmHOX2a(1) <<<<<<<<<GATA-1              --------->ALFIN1                           --------->WOX13(1)<---------   gaaatcgagagataagctttggtaaaccatgggtggtcgttacgatcggaacacattcgacgaacaagacgaagtcaatccttttgctgtaagcttttac  3745900                                     <---------ANAC58                           <---------------AGL15                                     <---------ANAC58                           ------>ZmHOX2a(1)                                   --------->LBD16                             <-----------------AGL1                     ---------->DOF2 <---------ANAC46                       --------->ARR14(2)               ---------->DOF2     ------>NtERF2                            <---------ARR14(2)             ----------->HVH21   <---------LBD16                           --------->GLK1(1)          <---------ALFIN1    <---------HSFC1(2)            <---------GLK1(2)  --------->TOE2(3) -----GT1--------->MYB46(3)   --------->HSFC1(2)    ---------->DOF2        <---------GLK1(1)      --- -DOF2 <-----------GT1        <---------HSFB2a(1)--------->TOE2(3) <---------SPL7                <---   tctctgatttcaccactgaaagtgaaagaagaaactccggcgtgttatctcccttaaagctagcttcttcgtactgggtttcctcaaattggtctatttg  3746000                                                              ------>MYB46(1)                  ------                                                           <---------ANAC58                   <------                                                           <---------At4g35610            <------ZmHOX2a(1)                                                           <---------ANAC58             <---------TOE2(3)        <---------ICU4                                     ----------->RAV1(2)          <---------TOE1(3)       <---------YAB1                   ------>ZmHOX2a(1)<-----------GT1            --------->At4g35610     --------->YAB1               <---------MYB46(3)   <----------DOF2              <---------At4g35610    <---------ATHB12             <--------P            <---------DAG2               <-------GAMYB <--    <---------YAB1              <-------GAMYB         <---------ANAC58             <---------MYB46(3) ---->TEIL                     <---------MYB46(3)     <---------ANAC58 <----------DOF2  <---------ANAC46 ------CCA1(2)              <---------LBD16   <---------ANAC46------>MYB83         <-----------RAV1(1)   tatcttatcattcttacttagggtttattttgggggttgttcctggttctgtgtttgctttacctgcctctctctttcgctatgtctgttgaggataatg  3746100                                                                    --------->ANAC46                                                                    --------->ANAC55(2)                                                     <-------GAMYB <---------TOE2(3)                                                  <---------At4g35610                            --------->TOE2(3)--------->ZAT14       <---------TOE1(3)                           ----------->GT1   <---------ZAT14      --------->MYB52(1)                          <-------TEIL   <-----------GT1          <-----------GT1     ----------->HVH21  --------->ARR14(2)  <----------DOF2   ==================================HOX2a_HOX2a     --------->WRKY12   <---------ARR14(2)  <---------DAG2    <------ZmHOX2a(1) --->ICU4      --------->AHL20(1)     <---------MYB46(3)     --------->ICU4 ---TOE2(3)    --------->AHL20(2)     --------->MYB52(2)    <---------TOE1(3)               <-------- -------YAB1   <---------AHL20(1)  ------------>MYB.PH3(2)  <---------TOE2(3)            ------>ZmHOX2a(2)   ttgatagttgacgagaatataatccaaattcgttaaaagtttgttactttactgctgttactaaggattaacgtaattgagcacgagtagatcgctttag  3746200                                                               <---------ANAC58                                                               <---------ANAC58                                                          --------->YAB1                                                          <---------ICU4                          <----------DOF2                 --------->ATHB12          <---------AHL20(2)                      ---------->ID1                      <--------ATHB1     <----------DOF2             <----------DOF2                             --------->ICU4  <---------ZAT18 --DOF2   <---------ARR11(3)  <---------TOE2(3)          <---------ATHB12--------->ZAT18   agatgtgctcgagttctttattttggctctttgatgttttctattggtatctctattcaatgatttcttgctatgtgctctttttttttattctgaagac  3746300  Previous    Next  AGI:  At1g11175.1    Description:  other RNA Range:  from: 3744858    to: 3745655    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g11180.1    Description:  secretory carrier membrane protein (SCAMP) family protein. Identical to Putative secretory carrier-associated membrane protein 5 (SCAMP5) [Arabidopsis Thaliana] (GB:Q9SXA5); similar to SC3 (SECRETORY CARRIER 3), transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G61250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24113.1); contains InterPro domain SCAMP; (InterPro:IPR007273) Range:  from: 3745774    to: 3748521    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version