Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       ------>MYB83                     -------->P                     --------->MYB52(1)                  --------->DEAR3(2)                                             <---------ANAC58                <-----------GT1                                                  <---------ANAC55(2)              <---------DAG2                                                     --------->ANAC55(2)              <----------DOF2                                     <---------ARR11(3)  <---------AHL20(2) ------>MYB46(1)                              --------->ARR11(3) <---------AHL20(2) --------->MYB55(1)                           <---------GLK1(1) --------->AHL20(2)<---------MYB46(2)                      <---------MYB46(3)    <---------ANAC58 <---------AHL20(1)----------->HVH21                   --------->LBD16           <---------ANAC55(1) --------->AHL20(1)--------->MYB46(3) <---------------------WRI1 --------->GLK1(1)    --------->ATHB12 --ICU4   --------->LBD16  --------->SPL7     --------->YAB1  <---------YAB1    <---------TOE2(3) >HAHB4  --------->RAP2.6(2)      <---------MYB52(1) <---------LBD16         <----------DOF2  ------- >ICU4  --------------->AtSPL3 --------->MYB46(3)---------->DOF2<---------ARR11(3)  ------->TEIL  <-- -ATHB51<---------LBD16 ----------->GT1    --------->YAB1 <--------P--------->TOE2(3)<---------YAB1   caatttaatagccggactttaccgaccggtacaaccattagtcgataataacaaagccgggttgatgatatctcaatcggtttacgtatcattgaaatta  3676300                                            <-------TEIL                                         --------->At4g35610                                    <---------ICU4          --------->ANAC58                                    --------->YAB1          <---------ANAC55(2)           <---------ATHB12        --------->ICU4         <-----------GT1       <-------TEIL      <---------AHL20(2)--------->CCA1(2)--------->ANAC46      --------->GLK1(2) <---------AHL20(2)--------->ARR14(2)--------->ANAC58 -->ICU4 --------->WOX13(1)      --------->YAB1        <---------ICU4                              -- ----ZmHOX2a(1)         --------->AHL20(2)<---------ARR14(2)--------->ANAC55(2)            <---------AHL20(2)   ggagagagattcaatcactgtccgaattaaatgaacaataatcagatacaaaaaccaaaattacgccatttcatacaatttttgtaaaccgaatttatag  3676400                                                          --------->At5g28300                                                         <---------MYB46(3)                --------->GLK1(2)                        ----------->GT1            <---------ICU4                              <---------RAP2.6(2)                         <            --------->YAB1        --------->MYB52(1)    <---------DEAR3(1)                          <           <---------YAB1   --------->MYB46(3)          <---------ANAC46                     --------           <---------ATHB12 --------->REM1(1)         ------------>AtMYB77                 <---------         --------->YAB1   ----------->RAV1(1)  --------->YAB1                         ---------->DOF2 --------->WOX13(1)     --------->At4g35610   <---------ZAT6  <---------YAB1     <-------TEIL-------- ------->At4g35610     --------->ANAC46    <-----------GT1<-------GAMYB      <---------------AtSPL8<-   cagcaatctactaatcataatctagcagcaacaactcaaccgattttactgataaatggcggttaatattagaagtttacgagtacatcaaagctttgac  3676500                                                                                   <-------MYC4                                                                                   ------->MYC3                                                                                   <-------MYC2                                                                                   ------->MYC4                                                                                   <-------MYC3                                                                                  <---------TGA1a                                                                                  --------->ANAC55(2)                                                                                  <---------ANAC55(2)                                                                                  --------->O2                                                                                  ===================                                                                                  --------->TGA1a          <---------ARR14(2)                                                      <---------O2 -------->HAHB4            --------->WRKY12                              --------->AHL20(1) --------->YAB1            --------->ETT(2)                              <---------AHL20(1) ---------ATHB12        <---------ANAC46                                 <---------AHL20(2) ---------YAB1         <-----------RAV1(1)                            --------->YAB1 --------->REM1(2) ->WRKY45 --------->ARR14(2)<---------WRKY18(1)  <------ZmHOX2a(1)   <---------YAB1------->MYC2 -DOF2   <------ZmHOX2a(1) --------->WRKY38(1)<-----------RAV1(2)   --------->AHL20(2)              < ->WRKY38(1)   ------------>CBF  <-----------HVH21              <---------YAB1<-----------GT1    ==== --------TOE2(3)       <---------AtMYB61      <---------LBD16------->TEIL--------->AHL20(2)      ----   taatgatactaggatttggcaatttgtggtggaccggtcactgttttgccaggagaataaatgaatatgatataataaattaacacgtgtacaaattccc  3676600                  <---------MYB52(1)                 <---------At4g35610                 <---------ZAT2                 --------->At4g35610               <------NtERF2               <-----------RAV1(2)              <---------ZAT18             <---------ANAC46            <------NtERF2            --------->ATERF1(1)          <---------RAP2.3(3)          --------->ALFIN1          <---------DEAR3(1)         --------->ATERF1(1)        <---------MYB46(3)        <------MYB46(1)        xxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxx>smallRNA(le3)        <------MYB83       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxx>smallRNA(si3)       *TSS --------->RAP2.3(1)       xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           --------->ANAC58       xxxxxxxxxxxxxxxx>smallRNA(i)                                                --------->ANAC58       xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                            --------->ANAC46       xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      --------->ETT(2)   <---------ALFIN1       <---------DEAR3(1)       xxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxx>smallRNA(s)       <---------AtMYB61        <------MYB46(1)           <---------AtMYB61 xxxxxxxxxxxxxxx>smallRNA(le3)       --------->ALFIN1   <---------ANAC58               xxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxx>smallRNA(si3)        <------      <---------ABI4(1)   <---------ANAC46               xxxxxxxxxxxxxxx>smallRNA(le3)        <------     <---------ANAC58     <---------ANAC58               xxxxxxxxxxxxxxxx>smallRNA(se3)    *TSS     <---------ANAC46 <---------ANAC58                  ------>ZmHOX2a(1)  xxxxxxxxxxxxxxx>smallRNA(le3)     <---------ANAC58 <---------ANAC58                ------>ZmHOX2a(2)    xxxxxxxxxxxxxxxx>smallRNA(le3) ========================MYC_MYB<------MYB83          ----------->RAV1(2)  xxxxxxxxxxxxxxx>smallRNA(si3) ------------CBF <-------GAMYB <---------AtMYB61    --------->ARR11(3)    xxxxxxxxxxxxxxxx>smallRNA(s) ==========================RAV<--------P        <---------ANAC58      xxxxxxxxxxxxxxx>smallRNA(le3) ------->RAV1(1) --------->ZAT2<---------TOE1(2)<---------ANAC58  xxxxxxxxxxxxxxx>smallRNA(si3)   aacattggggtggtggcgcagttggctagcgcgtaggtctcatagctattgagtgatcctgaggtcgagagttcgagcctctctcaccccatttcccttt  3676700                                   <---------ANAC58                                   <---------ANAC58                                            ------                                <----------DOF2     <---------WRKY18(1)                        ------       --------->ICU4         <---------HSFC1(2)   ----------->HVH21                       --------->TGA1a ---DAG2                      --------->HSFC1(2)   --------->WRKY38(1)                   <---------ALFIN1 ----DOF2<-----------GT1---------->DOF2            --------->WRKY12           <-----------GT1  <-----   ttctctgtaattttcaattcccaaaataaagaagctttcgtttctctctcgcattgacccttcttctccagttttatgttttgcctctctcccacttctg  3676800                                                                                            ------>ZmHOX2a(1)                                                                                          <---------ZAT18                           --------->KAN4(2)                                              --------->ZAT18                          <---------KAN4(1)             --------->ANAC58            --------->TOE2(3)                          --------->KAN4(1)             --------->ANAC58           --------->YAB1                         <---------YAB1      ------->GAMYB                         <--------HAHB4                  --------->ANAC58          --------->MYB46(3)                     <---------ICU4 <---------AHL20(2)--------->LBD16          <---------MYB52(2)                     --------->ATHB12 ----->GT1        --------->ANAC58       <---------WRKY12                          -------->ATHB1 --->HSFB2a(2)    --------->ANAC46       <---------WRKY38(1)     ------->TEIL     <---------ATHB12 ----HSFB2a(2)   <---------LBD16        <------ZmHOX2a(2)    <---------TOE2(3)    --------->ICU4 <---   taaataatcttctcacatccccgcacgattattctctagccgatcaacgaacacagagacgctaatgtatttgactcgattcgaatcattagtcctctaa  3676900                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                              <------NtERF2                                                                                              <------                                                                                             --------                                                                                             ------>NtERF2                                                                                            ---------                       <---------GLK1(2)             --------->HSFB2a(1)                    <--------                  ----------->RAV1(1)                <---------HSFB2a(1)                   <---------ABI4(2)                 <---------MYB55(2)                 <---------TOE1(3)                      --------->ATERF1(1)          <---------GLK1(1)<---------ANAC58         ----------->ARR10                      <---------MYB55(2)          --------->GLK1(1)<---------ANAC58  <--------P                                    --------->MYB46(3)        --------->ATHB12--------->GLK1(1)  <---------ZAT6         --------->YAB1          <---------At4g35610      <---------WOX13(1)<---------GLK1(1) <---------TOE1(3)      <---------ATHB12         ------>NtERF2 ------ATHB12    --------->MYB46(3)       <---------TOE2(3)  <------ZmHOX2a(2)    <---------YAB1-----   tcacaccgattgatttccacccacagatttcttgtctgaaatttagggttagcgaaggtttggatcaatgatgcaaggtgaagtacaattgcagccaccg  3677000                                                                                <---------MYB46(3)                                                                             <-----------RAV1(1)                                                                             ====================RAV                                                                     <---------At4g35610                                                                     --------->ZAT2    --------->ANAC58                                                                     <---------ZAT2  <-----------RAV1(2)                                                                     --------->At4g35610<------ZmHOX2a(1)                                      <------ZmHOX2a(2)             <-----------RAV1(1)--------->ANAC58                                      ==================================HOX2a_HOX2a  <---------ANAC46 -------ARR14(2)                     --------->ARR11(3)             =============================RAV -------GLK1(2)                      <---------ARR11(3)     --------->ATERF1(1)--------->ALFIN1 ------>ARR14(2)                  <------ZmHOX2a(1)         <------NtERF2<---------ANAC58 ---LBD16                     <<<<<<<<<MYB98               <---------ATERF1(1) <---------AtMYB61 ->MYB52(1)               <----------DOF2          <<<<<<<<<TBF1 ------>ZmHOX2a(1)  <------NtERF2 >DEAR3(1)           <---------At4g35610 --------->ANAC46  ------>NtERF2 <---------ANAC46 -ALFIN1         <---------ARR14(2) --------->GLK1(1)     <---------DEAR3(1)<---------DEAR3(1) ---->LBD16      --------->ARR14(2) <---------GLK1(1)  <---------DEAR3(1)<---------ANAC58     <------   gattcacagaaactaagtgattccgctcctttgttaggagatcacaccaattcttcttcggcgtctccttctgctgcgtctgtggtggcaggaaatagcg  3677100                                                        --------->ARR14(2)                                                     <---------ANAC58                                --------->HSFB2a(1)  <---------ANAC58                  <---------ARR11(3)     --------->At4g35610                  --------->ARR11(3)     <---------ZAT2 <---------ARR14(2)    ---------->DOF2--------->CCA1(2)     <---------At4g35610   --------->CCA1(2)            --------->HSFC1(2)   <---------ANAC46     ----------->GT1 ---------------WRI1            <---------HSFC1(2)  ---------->ID1  <------ZmHOX2a(1)            ----   atgagataaaggctgaagaagatttagagaacgatgcttcttcagctccttgttgtcgtatttgtttggaggacgatagtgaattgttaggcgatgaatt  3677200  Previous    Next  AGI:  At1g11010.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 3676607    to: 3676644    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g11020.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G22120.1); similar to Os01g0610700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043547.1); similar to hypothetical protein OsJ_002482 [Oryza sativa (japonica cultivar-group)] (GB:EAZ12657.1); similar to Os08g0384900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061703.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain Zinc finger, variant RING-type; (InterPro:IPR011016) Range:  from: 3676691    to: 3678524    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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