Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <-----------RAV1(1)                                 <-----------HVH21                             --------->ATHB12                             <---------AHL20(2)                             <---------ICU4                             -------->HAHB4                             --------->ATHB51                             -------->ATHB1                            <---------ATHB51         <------ZmHOX2a(1)  --------->ICU4         ==================HOX2a_HOX2a --------->ALFIN1       --------->ZAT6            ----------->HVH21      --------->HSFB2a(2)   <---------YAB1                  <---------DOF5.7(2)        <-----------HVH21      <---------HSFB2a(2)--------->AHL20(2)               --------->DOF5.7(2)       <------MYB83 -----------HVH21        <---------AHL20(2)               <---------MYB52(1)        <------MYB46(1) --------bZIP60(1)      --------->AHL20(2)              ----------->GT1    <---------ZAT6 ------->bZIP60(1)  <------ZmHOX2a(2)--------->ANAC55(2)<---------MYB46(3) ----------->GT1<---------LBD16   ggtgtcatctaggagcaattggatcatttaattattgtcatgtgttgggccttgggagtcgttaactctcgttcatggtgttaatttggtttcacggggt  3664000                                                      <---------MYB52(1)                                                     <-------GAMYB                                                    <---------MYB46(3)                            <--                                      --------->GLK1(2)                                           ---                                    --------->HSFB2a(1)             <-------TEIL                <----       ----------->GT1     ------>ZmHOX2a(1)        <-----------RAV1(1)                         -----  --------->ATHB12  --------->ZAT14 <---------HSFB2a(1)            --------->AtLEC2             -----   gagtttattgggttatatacggtgaagtccttctaagaaaattctgactcaagtctgttgggaaattacatgcattggctcaatctgaaaatttagtggg  3664100          <---------AHL20(1)                                                                   ------          <---------AHL20(2)                                                             <---------HSFC1(2)          --------->YAB1                             --------->YAB1                      --------->HSFC1(2)    --------->ANAC58                                 --------------->AGL15               <---------HSFB2a(1)    --------->ANAC46                                ----------------->AGL3               --------->HSFB2a(1)    --------->ANAC58                                ----------------->AGL2              --------->GLK1(2) -------At4g35610                               <----------DOF2                         <-----------ARR10 ------>At4g35610  --------->ANAC46     --------->ANAC46                                --------->ARR11(3) -----PCF2--------->AHL20(2)         <---------ARR14(2)                                 --------->ARR14(2) ---->TCP20<---------AHL20(2)        --------->ARR14(2)                                 <---------ARR14(2) ---->TCP15(1)  --------->ZAT18     <---------GLK1(1)<---------------AGL15             <---------GLK1(2)   acctgcaagcaataaaattgcacaaaacaatttgaagcatatcagcaattctttttcataaatagcaatttagaacccaaataagcctagaatcttccta  3664200                                                               <---------ZAT18                                                               --------->ZAT18                                                        ---------->DOF2                                                       ------->GAMYB                                                      --------->ANAC58                 <---------ANAC58                     --------->ANAC58        <---------YAB1                               ------>MYB83     --------->GLK1(2)                               ------>MYB46(1)    <---------ARR14(2)                              --------->MYB52(1)                        -------    <---------GLK1(2)                              --------->DEAR3(1)        ---------->DOF2 --------    --------->ARR14(2)          --------->ANAC46  --------->MYB46(3) ----------->GT1     ------------ >ZmHOX2a(1)     <---------ANAC58         <-----------GT1   ------------------------>ANAC81--------->WOX13(1)   gtcccatattctgatggagacttgtcccaagtccaaaccacatattactctcaccaacgaaagagggcacaatgtaaaacaaagacatagagacaatcac  3664300                                   <-------MYC4                                   <-------MYC2                                   ------->PIF5                                   ------->MYC4                                   <-------PIF5                                   <-------MYC3                                   ------->MYC3                                   ------->MYC2                                  ============================bZIP_DOF                                  <<<<<<<<<<HY5                                  >>>>>>>>>>HY5                                  <---------bZIP60(2)                                  --------->PIF3(3)                                  <---------O2                                  <---------TGA1a                                  --------->bZIP60(2)                                  <---------PIF3(3)                                  --------->O2                                  --------->TGA1a                               ---------------->PIF3(2)                             --------->ANAC58                             --------->ANAC58                          <---------SPL7                                                            -                         --------->TOE1(1)  <-------TEIL                                            -                    --------->ANAC46      --------->ARR14(2)                                        <                    <---------ALFIN1--------->ALFIN1                                           ------                  ----------->RAV1(1)    --------->At4g35610                                   ------                 <---------ZAT18 ------>NtERF2                                                 ------                 --------->ZAT18<---------ALFIN1   <----------DOF2               --------->ANAC58   -                 --------->RAP2.3(3)----------->HVH21                            --------->ANAC46   -               --------->PCF2--------->ANAC46<-----------GT1          --------->MYB52(1)     -------- -->YAB1    ---------->DOF2 --------->SPL7<---------GLK1(2)           <---------ALFIN1xxxxxxxxxxxxxxx ->MYB46(3) ================================bZIP_DOF                 ----------->HVH21*TSS<---------- >CBF   --------->ZAT6   --------->TOE2(1)<---------ARR14(2) ------>ZmHOX2a(1)   --------->ANAC58 ---   caagaagataacacaagagcccacacatcgtacgccacgtggcagattcacctctttataatcctctctccctcacggtttctacgacattttcacaaag  3664400                                                                                                   --                                                                                                  ---                                                                                                 ----                                                                                                -----                                                                                               <-----                                                                                              <------NtERF2                                                                                             <-------                                                                                             ------>NtERF2                                                                                            ---------                                                                                            ---------       ------->GAMYB                                                                        ---------     ------>MYB83                                                                           ---------   --------->MYB46(3)                                                                       ---------   --------->AtMYB61                                                                        <-------- -------->ANAC46                                                                            --------- -------->ANAC58                                                                            --------- ---------ALFIN1                                                                           --------->RAP2.3(1) --->ANAC46                                                                                --------->RRTF1(1) --->ANAC58                                                                                --------->ERF1 --->ANAC58                                                                               --------->LBD16 -------->REM1(1) --------->ARR14(2)                 <---------ZAT18         ------->TEIL--------->ANAC46 -------->ANAC58  <---------ARR11(3)                 --------->ZAT14      --------->ANAC58<---------ATERF1(1) -->DOF2          --------->GLK1(2)                  <---------ZAT14      --------->ANAC58------>NtERF2 xxxxxxxx>smallRNA(se3)                          <---------ALFIN1     --------->YAB1     --------->DEAR3(1) -GT1------>MYB46(1)         --------->YAB1  <---------ANAC58        <---------ATHB12  ------>ZmHOX2a(1) -------->RAV1(1) <---------ARR14(2)         <---------ANAC58    <---------ZAT18  <----------DOF2<---   ccacaccaactcactcacaaaatctgtagaatcatctttcaacaatggcttccactgctctctccagcgcaatcgtaagcacctctttcctccgccgtca  3664500                                                                                         --------->ANAC58                                                                                      ----------->HVH21                                                                                     <-----------TGA1                                                                                     <-----------HVH21                                                                                    --------->bZIP60(2)                                                                                    --------->TGA1a                                                                                    --------->ANAC46                                                                                    <---------O2                                                                                    =================                                                                                    --------->O2                                                                                   ------>NtERF2                                                                                   <------NtERF2                                                                                  --------->RAP2.6(2)                                                                                 <---------DEAR3(1)                                                                                 --------->ATERF1(1)                                                                                <------NtERF2                                                                                --------->ATERF1(1)                                                                                <---------ATERF1(1)                                                                                ------>NtERF2                                                                                <---------DREB2C(1)                                                                               <---------SPL7                                                                               <---------RAP2.3(1)                                                                               ------>NtERF2                                                                               <---------ERF1                                                                               <---------ATERF1(1)                                                                              <---------RAP2.6(2)                                                                              <---------RAP2.3(2)         --------->YAB1                                                       --------->ATERF1(2)        <---------ATHB12                                                     <---------DREB2C(1)       ------>MYB83                                                          <---------ATERF1(1)       ------>MYB46(1)                                                       --------->ATERF1(1)      --------->WOX13(1)                                                     <------NtERF2 ----->GAMYB                                                                 ------>NtERF2 ------>MYB46(3)                                                             --------->At4g35610 ----->At4g35610                                                             --------->DEAR4(2) ------>RAV1(1)                                                              <---------At4g35610 ----WRKY12                                                                 <---------ATERF1(1) ----HVH21                        ----------->RAV1(1)                      <---------DEAR3(1) >RRTF1(2)                  <---------MYB52(1)                            <---------LBD16--------->ANAC58 >RRTF1(3)          ------>ZmHOX2a(2)                        --------->HSFB2a(1)--------->DREB2C(1) >RAP2.3(2)        <------ZmHOX2a(2)                        <---------ARR11(3)--------->DEAR3(1) >RAP2.3(3)       --------->ARR14(2)                        --------->ARR11(3)<---------ATERF1(2) >RAP2.6(2)       <---------ARR11(3)  --------->ANAC58      <---------ARR14(2)<---------DEAR3(1) -ATERF1(2)       --------->ARR11(3)  --------->ANAC58      --------->ARR14(2)--------->ATERF1(1) >ATERF1(2)       <---------ARR14(2)  --------->ANAC46     <---------CCA1(2)<---------RAP2.3(1) >DEAR3(1)       --------->At4g35610 ------->GAMYB      <------NtERF2--------->DEAR3(1)--------->MYB52(1) ------At4g35610 <---------At4g35610<---------ALFIN1 ------>NtERF2<---------ALFIN1<---------ATERF1(1)   acagacaccaatcagcctcagatccctcccgtttgccaacacacaatctctcttcggcctcaaatcttccaccgctcgcggcggccgcgtcacggccatg  3664600                                                                                    <------ZmHOX2a(1)                                                                              <---------ZAT2                           --------->MYB52(1)                                 <---------At4g35610                          ----------->HVH21                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        ----------->RAV1(2)                                <---------At4g35610                        <---------ZAT2                                    --------->ANAC46                        --------->TGA1a                                   <---------DEAR3(1)          --------->WRKY18(1)                                          ----------->HVH21  --------->LBD16    ------>MYB83        --------->ZAT2                                <---------HSFB2a(2)--------->RAP2.6(2)    ------>MYB46(1)     <---------TGA1a                               ------>ZmHOX2a(1) <---------LBD16    -------->P  <-------TEIL                                     --------->ANAC46 <---------TOE2(3)    ==============================MYC_MYB                 --------->ARR11(3)  --------->ZAT2 ============MYC_MYB  <---------ALFIN1                    <---------ARR11(3)  --------->At4g35610   gctacctacaaggtcaagttcatcacacctgagggagaacaagaggtcgaatgcgaagaagatgtctacgtcctcgacgctgctgaggaagccggactcg  3664700                        <---------ANAC58                        <---------ANAC58    ---------->DOF2                      --------->ARR14(2)  <------NtERF2                      <---------ARR14(2) --------->LBD16                     <---------MYB52(1) <---------ANAC46                    <---------DEAR3(2)  <---------LBD16                ----------->HVH21      <---------LBD16                --------->ALFIN1       --------->ATERF1(1)               <---------SPL7          <------NtERF2              <---------ANAC58        <---------RRTF1(1)              <---------bZIP60(2)     ------>NtERF2                   <-----------HVH21              <---------ANAC46        <---------RAP2.3(1)        <-----------GT1<---------ARR11(3)              <---------ANAC58       <---------ANAC46            <---------WRKY18(1)         <---------ICU4<---------MYB46(3)------>NtERF2          --------->WRKY38(1)                 -   acttgccctactcatgccgtgccggttcttgctcaagttgcgccgggaaagtcgtctctggttctattgaccagtcggaccagagcttcttagacgatga  3664800                                                                ----------->RAV1(1)                                                    <-----------HVH21                                                    <-----------TGA1                                 <----------DOF2   <---------ETT(2)                                <---------ANAC46   --------->bZIP60(1)                                <---------ANAC58   <---------bZIP60(1)                                <---------ANAC58   <---------TGA2(1)                           --------->ALFIN1        --------->TGA2(1)            <---------MYB52(1)                           <-----------RAV1(1)     --------->ETT(2)             --------->ICU4                     <---------WRKY18(1)          <-----------STF1         --------->ANAC58        <-                  <---------ANAC58              <---------bZIP60(1)        --------->ANAC58   -------                  <---------ANAC58 <---------ARR14(2)   <---------------------WRI1 <---------ANAC55(2) -------->At4g35610 ----------->HVH21           --------->bZIP60(1)---------->DOF2 ----------->GT1 <-   acagatgagtgagggctatgtcttgacctgtgtggcttatccgacttctgatgtcgtcatcgaaacccacaaagaagaagccattatgtaaaattttaaa  3664900  Previous    Next  AGI:  At1g10950.1    Description:  endomembrane protein 70, putative. similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT2G01970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64706.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47029.1); similar to hypothetical protein OsI_036403 [Oryza sativa (indica cultivar-group)] (GB:EAY82444.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) Range:  from: 3659209    to: 3663984    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g10960.1    Description:  ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding. Identical to Ferredoxin-2, chloroplast precursor (PETF2) [Arabidopsis Thaliana] (GB:O04090); similar to FED A (FERREDOXIN 2), 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding [Arabidopsis thaliana] (TAIR:AT1G60950.1); similar to unknown [Populus trichocarpa] (GB:ABK95659.1); similar to unknown [Picea sitchensis] (GB:ABK23878.1); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding site; (InterPro:IPR006058); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding, plant; (InterPro:IPR0060 Range:  from: 3664386    to: 3665039    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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