Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->ICU4       --------->YAB1      <---------YAB1    <---------At4g35610   --------->ICU4 <---------At4g35610 --------->At4g35610                                                                               -- -------->ALFIN1                                                                                   -- --------PCF2                      --------->ZAT18                                               <--- ----MYB46(1)                      <---------ZAT18                                               <--- ----MYB83<---------ICU4  <------ZmHOX2a(1) --------->ZAT6               --------->ARR14(2) ------->TEIL -------ANAC58           ----------->GT1   <---------YAB1          --------->YAB1           <-------- -------ANAC58          ----------->GT1  <---------ICU4           --------->ICU4            --------- ------MYB46(3)    --------->ANAC58--------->ZAT14           --------->ANAC46          --------->MYB52(1) ----->MYB55(2)    --------->ANAC58<---------ZAT14          <-------TEIL <---------ARR14(2) ---------   gggtgctgatgataatgaaacacgaacaggaaaaaactgcacattatcactgagactatacatacacaattatcaaatccagtgagacacaacgaatcgg  3655200        <---------MYB59      <-----------GT1     <-----------GT1  <---------ICU4                                                                             -------- ------->MYB52(2)                                                                     <---------YAB1 --------->GT1                                                                        --------->ICU4 -----P --------->MYB46(3)          <---------AHL20(1)                              --------->YAB1 ------MYB52(1)      --------->ARR11(3)                                          --------->WOX13(1) -ARR14(2)------>MYB46(1)           <---------AHL20(2)                         ====================== >GLK1(2)<---------ALFIN1           --------->AHL20(2)       =========================HOX2a_HOX2a >ARR14(2)------>MYB83              --------->AHL20(1)       <------ZmHOX2a(1) <------ZmHOX2a(2) <---   ttagttattacccacctatttcagaacttggaagacaataaaatactcccaaaaaaaaaaacaggaaattgaagtgaatcgatcagtcatgagtctaaag  3655300                                                                     --------->ANAC46                                                                     --------->ANAC58                           --------->TOE2(3)                         --------->ANAC58                       <---------GLK1(1)                          <---------ARR14(2)     <----------DOF2   --------->GLK1(1)                 --------->SPL7                      --------    <---------ICU4  --------->ANAC58            <-----------GT1   --------->ARR14(2)   <----------ID1 -->DOF2            --------->ANAC58       --------->ICU4<---------TOE1(2)           ---------------- ===HOX2a_HOX2a    XXXXXXXXXXXXXXXXXXXX>MIR1886.2 --------->ZAT6----------->ARR10   ---------->DOF2 ---ZmHOX2a(1) --------->ANAC46         --------->AHL20(2) <------ZmHOX2a(1)  --------->ALFIN1   gattaatctttacccatgcgaaacgaaatccctaatcgacaactaaatattaacactcgtaggacgaagaaacgcaatcggtgtgagaaagaacaaaacg  3655400                                                                                              <------                                                                                              <------NtERF2                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                           <---------ABI4(1)                                                                                           --------->ATERF1(1)                                                                                          --------->LBD16                                                                                          <---------RAP2.3(1)                                                                                          <---------ATERF1(1)                                                                                          ------>NtERF2                                    <-------TEIL                              <----------DOF2<-------                               <------ZmHOX2a(1)                              --------------------->WRI1                            <-----------RAV1(2)                <---------ANAC58     --------->ZAT6                         --------->ANAC58                      <---------ANAC58   <-----------GT1        <---------ICU4   --------->ANAC58           <---------ZAT18          <---------ANAC58<-------  --------->TOE1(3)    ---------->DOF2              --------->ZAT14          <---------ANAC58<-------  --------->TOE2(3)  --------->ANAC58               <---------ZAT14          <---------ANAC46------>NtERF2 ->MYB52(1)   <----------DOF2--------->LBD16     <---------ANAC46  --------->HSFB2a(2)   <---------DEAR3(1) -------->ANAC81     --------->ANAC58           --------->ATHB12   <---------HSFB2a(2)  <---------LBD16   aaaaccctaaaaatgactttgaaacgaaagccaggaaatacattttcgattcagtggagtctcttgcttctgtaacgttgcttttaacactccggcggcg  3655500                                                   --------->TGA1a                                                  ------>MYB46(1)                                                  ------>MYB83   <---------ATHB12                             --------->DREB2C(2) --------->WOX13(1)                             --------->DEAR4(1) ---------------WRI1                            --------->DEAR3(1) -->RAP2.3(1)                                   ------->GAMYB                                     <-- --ORA47(2)                                  --------->DEAR3(1)                                   <-- --DEAR4(2)                                  <---------ALFIN1                                    <--- >DEAR3(1)                                   --------->AtMYB61                               <------- >ATERF1(2)                                 <---------ABI4(2)                                <------- -ATERF1(2)                                 --------->MYB46(3)                          --------->MYB52(1) -RAP2.3(3)                                 <---------MYB55(2)                          <---------ICU4 -DEAR3(1)                                 ------>NtERF2<---------At4g35610     --------->LBD16<----- -RAP2.3(2)                                <---------ATERF1(1)                <---------LBD16<------- --ATERF1(1)   <------NtERF2              --------->RAP2.6(2)    <---------ANAC46      ------>ZmHOX2a(1) --ERF1      <---------DREB2C(2)  --------->AHL20(2)    --------->At4g35610 <-----------GT1 <-------- --RAP2.3(1) <---------DEAR3(1)<------ZmHOX2a(1)=============MYC_MYB     <---------GLK1(2)*TSS-------   aaacaatcagggaagtcggcgagacgaagcacaggataaaatggccaccaccgacttgagctcaaggccgtagaagattatccggtttcctaatggcggg  3655600                                                            <---------YAB1                                                          --------->AHL20(2)                                                          --------->ATHB51  <-----------GT1                                         <---------ICU4 -------RVE1(1)                                           <---------AHL20(2) -------CCA1(1)              --------->At4g35610          -------->ATHB1 ------ARR11(3)   <-----------GT1                         --------->YAB1 --ANAC46    --------->ARR11(3)                           <--------HAHB4 --ANAC58    <---------AHL20(1)                          <---------ATHB51 -NtERF2     <---------ARR11(3)                      ------------>CBF          ------------>CBF --ANAC58    --------->AHL20(1)               ---------->DOF2              --------->HSFB2a(1) -LBD16      <---------AHL20(2)          <----------ID1  --------->ICU4 --------->LBD16 -->LBD16    --------->AHL20(2)   ------------------------>ANAC81  <---------GLK1(1)   atattttccctctaatatattcacatttcgcatcagaaacaaaaaaacaaaagaaaacaattatttttgaattccgaacatttcaatttgattttttgtt  3655700                                            --------->ANAC58                                            ----------->GT1                                            --------->ANAC58                                         <------ZmHOX2a(1)       <---------GLK1(1)                                       <---------------AtSPL8    --------->GLK1(1)                --------->CCA1(2)      --------->ANAC58   --------->YAB1               --------->ARR11(1)      --------->ANAC58 --------->AHL20(2)                <----------DOF2               <---------GLK1(2)   --------->YAB1      --------->YAB1                  ------->TEIL               --------->ARR14(2) <---------YAB1      --------->AHL20(2)         <-------TEIL<-------         <---------AHL20(2)   --------->AHL20(2)  --------->AHL20(2)        --------->AHL20(2)   gacatttgtattttatagatttgcattttcaaaaaaatgataaggaacgaaaaaaaataaaaataagaaatccaaaaatcaaatacatgaatcttttcgg  3655800                         --------->ATHB12                     --------->AHL20(2)                    <---------AHL20(1)                    --------->ARR11(3)                   --------->YAB1     <---------ARR11(3)  <---------AHL20(2)                                         -------->P     --------->ARR11(3) <---------YAB1                            <------ZmHOX2a(1) ------->TEIL  --------->AHL20(2)<---------ARR11(3)                        ---------->DOF2  --------->YAB1  <---------AHL20(2)--------->AHL20(1)     <-------TEIL <---------ANAC58       <---------ICU4  <----- --LBD16     <-----------GT1             --------->YAB1 <---------ANAC58    --------->YAB1   <-------   aaaataaaatctaatttacaaaaatatttattggaggtcacaatgttcatagtaccatgcgtagcaaaggactcattctcatcatcaacctctctgtttg  3655900                           ----------------->AGL2                       --------->ARR14(2)            ---------->DOF2                   <----------DOF2 ----MYB46(3)          <---------ARR14(2)     --------->TOE1(3)           --------->ANAC46          < --MYB52(1)       <-----------GT1             --------->TOE2(3)---------->DOF2 <---------ZAT14      -   ttcatcttatactgcaaattttacaaatctccaaaaccagaaccaaaaccttagccaaagcattgtaaaggcaaacacgagaacagagacttttcagttt  3656000            ------>NtERF2         ------->GAMYB        --------->MYB46(3)       ------>MYB83                                                                <----------DOF2       ------>MYB46(1)                                                       ------->TEIL      --------->MYB52(1)                                                   <---------ZAT18     --------->TOE2(2)                                                     <---------ZAT14     --------->TOE1(2)                                                     --------->ZAT18    <---------MYB52(2)                                                   --------------->AtSPL8    --------->MYB46(3)                                                  <---------ANAC55(1)    <---------MYB55(2)                                                  <---------ANAC58 ------->GAMYB                                                          <---------ANAC58 ---------MYB52(2)         --------->ANAC46                             <---------ANAC46        ----- -------->MYB46(3)<----------DOF2                                 <---------ALFIN1--------->TOE2(3)   caacaaaccaacgacgacttctttcttacacagaccaaaaaccaaaatatcaacttattctcacttctccacttgcgtgtacttcctttacagtcttatc  3656100  Previous    Next  AGI:  At1g10930.1    Description:  ATRECQ4A/ATSGS1/RECQL4A; ATP-dependent helicase. similar to ATRECQ4B/RECQL4B (ARABIDOPSIS RECQ HELICASE L4B), DNA helicase [Arabidopsis thaliana] (TAIR:AT1G60930.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ56485.1); similar to hypothetical protein OsI_015422 [Oryza sativa (indica cultivar-group)] (GB:EAY94189.1); similar to OSJNBa0088K19.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE03209.2); contains InterPro domain DNA helicase, ATP-dependent, RecQ type; (InterPro:IPR004589); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like heli Range:  from: 3647894    to: 3655590    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g10940.1    Description:  ASK1 (ARABIDOPSIS SERINE/THREONINE KINASE 1); kinase. Identical to Serine/threonine-protein kinase ASK1 (ASK1) [Arabidopsis Thaliana] (GB:P43291); similar to SNRK2-10/SNRK2.10/SRK2B (SNF1-RELATED PROTEIN KINASE 2.10), kinase [Arabidopsis thaliana] (TAIR:AT1G60940.2); similar to SNRK2-10/SNRK2.10/SRK2B (SNF1-RELATED PROTEIN KINASE 2.10), kinase [Arabidopsis thaliana] (TAIR:AT1G60940.1); similar to serine/threonine protein kinase (GB:AAA33003.1); similar to serine/threonine protein kinase (GB:AAA33004.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR Range:  from: 3655777    to: 3658578    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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