Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->CCA1(2)                                                  <---------LBD16                <---------ANAC58                 <---------ANAC46                <---------ANAC58                 <---------ANAC58     <---------At4g35610      <---------MYB46(3)            --------->ATHB12    <---------ARR14(2)                       ----      --------->ABI4(2)           <<<<<<<<<<<<<<<<<LFY----------->ARR10                        <-----     <---------AtMYB61      --------->ICU4       <---------ANAC58     --------->At4g35610     ------>NtERF2     <---------DEAR3(1)   ----------->GT1    --------->ATHB12  --------->ATHB12       <--------------     --------->ALFIN1  --------->ANAC58     --------->ICU4     <---------ICU4   <---------At4g35610    <---------MYB52(1) --------->ANAC58     <---------ATHB12  <---------YAB1    --------->At4g35610   aagaccggtggtgctagtacttggcaagcagtgattatccattggaatcattcgtggagatttgataattgaagctgatttgagctacgatgatgccccc  3604700                                                                                           --------->ARR14(2)                                                                                           <---------GLK1(2)                                                                                           <---------ARR14(2)                                                                                         ----------->ARR10                                                                                     --------->ZAT2                                                                                     ================                                                                                     --------->ANAC46                                                                                     <---------ZAT2                                       <---------AHL20(2)                            --------->O2                             --------->LBD16                         ---------->DOF2 --------->TGA1a  --------->CCA1(2)         --------->HSFB2a(2)                      ==========================bZIP_DOF  --------->GLK1(1)         <---------HSFB2a(2)             ===================================bZIP_DOF --------->ARR11(3)      --------->ARR14(2)                 ---------->DOF2          --------->bZIP60(2) <---------ARR11(3)      <---------ARR14(2)             <---------ZAT2              ------>MYB83 ------>DOF2            --------->GLK1(1)               --------->ZAT2              ------>MYB46(1) -NtERF2     <---------TOE2(3)        --------->AHL20(2)--------->At4g35610        <---------ALFIN1 -------WRI1 <---------TOE1(3)        <---------AHL20(2)<---------At4g35610    --------->GLK1(1)   aaagatatcaaatttagggttttagcaaatccagaaacaaataaatgaaacaaaacacagctgaaagaataaaaagatgagaaacccacctcagatttgg  3604800                                                                                      --------->DEAR3(1)                                                                             --------->ANAC46                                                            --------->DREB2C(2)    <---------ALFIN1                                                            <---------ETT(1) --------->ANAC58               ----------->GT1                          ----------->HVH21--------->ANAC58               <---------ZAT6<-----------RAV1(2)  <---------TOE2(3)      --------->ANAC46    ---------->DOF2    --------->TOE2(3)       --------->ICU4            --------->ANAC58 ==============bZIP_DOF<----------DOF2    ----------->GT1  --------->DEAR3(2)--------->ANAC58      <-   catcaacaaagaagatagagtaaaactttaatcaggggcagtgatggtaattagggatgtgaccgacaagagagaacgcaagcaaacacctccgagcagt  3604900                       <---------ANAC46                       <---------bZIP60(1)           <------NtERF2                       --------->bZIP60(1)      --------->ALFIN1                ===============================HOX2a_HOX2a                ===========================HOX2a_HOX2a          --------->GLK1(1)                <------ZmHOX2a(1)       <------ZmHOX2a(2)    <---------ANAC58            =====================bZIP_DOF     --------->ALFIN1<---------ZAT18            ---------->DOF2         <------ZmHOX2a(2)<---------At4g35610           <---------YAB1          --------->ARR11(3)--------->At4g35610        <---------YAB1 <---------TGA1a <-----------HVH21     <---------ANAC58 --------AGP1 <---------TOE2(3)    <---------ARR11(3)<---------ZAT2                                 -   agaactgaagattataaaggatgtgatgtgagaagaagatcgatcagagagtggcagctaattgcgaactccaatgggagaaaatcgagagagagagaga  3605000                                                               --------->ARR14(2)                                                               <---------ARR14(2)                                                               <---------GLK1(2)                                                            <---------HSFB2a(2)                                                        <---------ANAC58                                                        <---------ANAC46                     <-------                                            --------->ALFIN1--------->HSFB2a(2) --------->YAB1   <---                                     <---------WOX13(1) <---------ANAC58     *TSS           <--------        ---------->DOF2            --------->ATHB12--------->MYB52(2)    ---------->ID1     <-------- --------->DOF2                   --------->ICU4 <---------ANAC46    <----------DOF2    <----------DOF2   gagaaagaatgaaagagagagtgtgtttgtttagtagtaattggctgtgttgtttgtttcttgcagaacctctttgttgtattcatactcctttgctttc  3605100                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     --------->MYB52(1)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <-----------GT1                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                --------->YAB1       ---------->ID1                    ------------>CBF                   <---------AHL20(2)  <----------DOF2<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <---------AHL20(2)     <-- ---DOF2        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         <---------AHL20(1)     --- -------DOF2   <------------------------ANAC81              <---------GLK1(2)     <---------YAB1 ---- -ANAC58     <------------------------ANAC81     <----------DOF2<---------YAB1   --------->AHL20(2)<- -ANAC58    <----------DOF2             ------>NtERF2 <-----------GT1      --------->AHL20(2)    ----   ttttcttttggcctctttttttttttttttttttttttttgcctccaattcctttttttccatattcttcttggtaataaaatttttataactagcgaat  3605200         --------->TOE2(3)        ----------->GT1        <---------ZAT6                             <---------TOE2(3)           --------->ANAC58 -------AHL20(2)                               <----------DOF2                 --------->ANAC58 ------>AHL20(2)                   --------->AHL20(2)                    <---------ARR11(3) ----->YAB1                        <---------AHL20(2)                    --------->ARR11(3)         - --------YAB1     <---------AHL20(2)   <-----------GT1             <---------ZAT14             ------ ----->AHL20(2)   --------->AHL20(2)--------->WOX13(1)     <----------DOF2--------->GLK1(1)    <-----   taaaattgtattgttaatttttaattttagttaacaattaatcacttgcctttaagtttatctttagagtttagagatatcaaggcatcaatatgtagat  3605300                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                   <---------ARR11(3)                   --------->ARR14(2)                   <---------ARR14(2)                   --------->AGP1                   --------->ARR11(3)                   <---------ARR14(3)                   <-----------ARR10                   --------->ARR14(3)            <---------AtLEC2             ----------->GT1       <---------ARR14(2)           <---------YAB1       --------->ARR14(2)           <---------TOE2(3)       <---------GLK1(2)         <---------YAB1       --------->ARR11(1)     <---------YAB1                                                        <   <-----------------AGL3     <---------AHL20(2)                                                    -   <-----------------AGL2     --------->AHL20(2)                                        ----------->GT1   ================================================================================================== -------->WOX13(1)<---------GLK1(1)<---------AHL20(2)                  <-----------GT1  <----------ID1 --->ARR11(3)     --------->GLK1(1)--------->AHL20(2)           <---------YAB1   ----------->GT1 <--- ----ARR11(3)    ----------->ARR10 --------->YAB1       <-------TEIL----------->GT1   ---------->DOF2   atcaatctagatttggatggagatcttggcatattattaatattagttaaaatttagattcattttccgattgtaactaaacatcgaaaaaagaaaaatt  3605400                   <------MYB46(1)                   <------MYB83                  <---------DEAR3(1)                 <--------P               <---------MYB46(3)          --------->ZAT14          <---------ZAT14        <---------YAB1                                                                     ---------- ---------------AGL15  <------NtERF2     --------->At4g35610                       <-------TEIL -------------->AGL15 <-----------HVH21  <---------At4g35610            <-----------GT1    ---------- ===============MADS_MADS           ----------->HVH21  <---------AHL20(2)  --------->TOE2(3)        - --------GT1  <---------ZAT6 ----------->HVH21         --------->AHL20(2)  <---------MYB59 --------->ZAT6   tacttctattagtatagtggtaggcgtcagagtgacccatgacatctgagtgggaatttatatacaaaatagttttacctaaatattcatttagcagtac  3605500          ------>ZmHOX2a(1)    <---------ICU4  <-----------GT1 <-----------GT1                ------>MYB83                                      <---------AHL20(2) ----->AtSPL3           --------->TOE2(3)  ------>ZmHOX2a(2)          <---------ZAT14 ----->AtSPL8    --------->ZAT6<---------ALFIN1                      --------->ALFIN1  <---------HSFB2a(2) -------->AHL20(2)--------->YAB1------>MYB46(1)            <---------MYB46(3)   --------->YAB1   tattaaacattcctagttaatactaatctaaacccacttgttggatcgaactcacacatagtggttacagagtgttgagccaaaataatcgagaaatgaa  3605600  Previous    Next  AGI:  At1g10820.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G60670.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15416.1); contains InterPro domain Homeodomain-like (InterPro:IPR009057) Range:  from: 3600911    to: 3605077    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g10830.1    Description:  sodium symporter-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO45280.1); contains InterPro domain NnrU (InterPro:IPR009915) Range:  from: 3605577    to: 3607494    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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