Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->LBD16                                               <---------ATERF1(2)                                               --------->ATERF1(2)           <---------YAB1                     <---------LBD16                    ---------->DOF2         <---------ANAC46                     --------->RAP2.6(3)    --------->At4g35610          <-- ------>TEIL                >>>>>>>>>TBF1    --------->MYB52(1)      <---------At4g35610          <-- ---------YAB1          <---------ZAT14      -------->P         <---------MYB46(3)               ---- --->At4g35610          --------->ZAT14  ------->TEIL  <------ZmHOX2a(1)    ----------->GT1      ----   tgaatattgtgttgtgaatgagacagtgaagaagaagacgatgaacttaccggcataggagggttttggttagcagaattgttcaaagggacgatgagtt  3516600                                     ------>MYB46(1)                                     ------>MYB83                                     --------->MYB52(1)                                     -------->P                                    --------->MYB55(1)                                   <---------MYB111(1)                                   --------->MYB46(3)                                   --------->AtMYB61                                   <---------MYB55(2)                                   <---------MYB111(2)                                   <---------MYB46(2)                      <---------ARR14(2)                      --------->ARR14(2)                      --------->ARR11(3)                      --------->GLK1(2)   --------->ARR14(2)        <---------YAB1<-----------ARR10   <---------ARR14(2)   --------->ZAT6    <---------GLK1(2)--------->MYB46(3)                                  <---------At4g35610 ----MYB83--------->WOX13(1)       --------->DEAR3(1)                       --------->TOE2(3) ------- ----MYB46(1) ---------->DOF2     --------->MYB46(3)                        <----------DOF2 <-------- ----->MYB46(2)  ----------->GT1  <---------MYB52(2)            <----------DOF2           --------->At4g35610 ----->MYB59<---------ATHB12     ------>NtERF2                 <---------DAG2        <----------DOF2   tggtatcactatcaatgaaaggagaatcttgttgccaccaaccagagcctcttccatcaataacacctttcccttgtactttaattcctttcagctttgt  3516700                                                                    --------->At4g35610                <-----------GT1                                     <---------At4g35610          <---------ALFIN1                                  --------->SPL7          ----------->RAV1(1)                           --------------->AtSPL3     <<<<<<<<<GATA-1                                    --------------->AtSPL8     <<<<<<<<<GATA-4                                    <---------------AtSPL8     <<<<<<<<<GATA-3                        <---------MYB52(1)   ---------->DOF2                 ----     <<<<<<<<<GATA-2 <---------DAG2    <---------ARR14(2) <---------SPL7                         <---   --------->WOX13(1)<----------DOF2   --------->ARR14(2)--------->YAB1<-------TEIL              ---- ---->GT1--------->ANAC46         <----------DOF2     --------->YAB1<---------ZAT2               <--- --DOF2--------->ANAC46       <---------CCA1(2)      <---------YAB1 --------->ZAT2   ---------->DOF2   aaaatcaatccaccacattaacccttttccccatgtctttgaatccgttggagctataatcgtaccatcaagctgcataattcacaacaaagcttagaat  3516800                                              <---------HSFB2a(2)                                              --------->HSFB2a(2)                                             <---------LBD16                                            ----------->RAV1(2)           ======================HOX2a_HOX2a      ---------->DOF2                       <---------ZAT2                <------ZmHOX2a(1)  <-----------GT1                 <------ZmHOX2a(2)                       =======================HOX2a_HOX2a ----->AHL20(1)                  <---------ARR11(3)                    <---------ICU4 ------AHL20(1)                  --------->ARR11(3)           <---------ANAC58 ----->ARR11(3)            ---------->DOF2  --------->At4g35610        --------->YAB1     ------>ZmHOX2a(2) ------ARR11(3)          <---------AHL20(2) --------->ZAT2    <---------ANAC58           <------ZmHOX2a(2)   attttcaccaaagtgatacacttctatataaaagagatcaattctcacctggaacacaatgttagcttgacaataaggaccagagaatgagatcggtcca  3516900                          --------->YAB1                      --------->ANAC58                        --------->ANAC58                      --------->ANAC46                        --------->ANAC46                      --------->ANAC58                        --------->ANAC58                  --------->ANAC58                   --------->At5g28300                    --------->ANAC58  ----------->RAV1(2)                   <------NtERF2                      --------->At4g35610  *TSS    --------->MYB46(3)                   <---------SPL7                     <---------At4g35610 --------->ANAC58         <-                  <---------DEAR3(2)               <---------ZAT2 --------->At4g35610            ----                 --------------->AtSPL3            <---------At4g35610    ------->GAMYB  <---------YAB1                 <---------DEAR3(1)                --------->At4g35610    --------->ANAC58  ------->TEIL   <--------P<-----------RAV1(2)                   --------->ZAT2--------->RAP2.6(2)  <---------MYB52(1)   acaaggtaagtgtattcaggcggtacaagcatcactgatgcttcgattttgcaagctgctacccaagccgcttcaaacgcctgcaaccgttatgaaactc  3517000          --------->TOE2(3)        <---------AHL20(2)                          --------->ETT(2)                                -    --------->AHL20(2)                         <---------MYB52(1)                                   -    <---------ICU4         ----------->GT1  <---------YAB1                      <---------YAB1      -    --------->ATHB51      ----------->GT1 <-----------GT1                 --------->ICU4----------->GT1    <---------AHL20(2)  ---------->DOF2   --------->YAB1                 <------------CBF          <-   --------->ICU4   --------->TOE1(3)    <---------ATHB12          --------->ZAT14    <---------ANAC46 --------MYB52(1)   --------->TOE2(3)    --------->MYB46(3)        <---------ZAT14    <---------ANAC58 ------->GT1        --------->YAB1     --------->YAB1 <---------ZAT14  --------->ICU4 <---------ANAC58   tgttaattatttcattaactaatcttaaaagttaaaaccactaatcaccattagtctacagagaaactctgtagtaattgttatcaaggcttgtgaattg  3517100                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                  <--                                                                                                  <--                                <----------DOF2                                                   ---                                <---------DAG2                                                -------                             <-----------GT1                          <---------TOE2(3)      ========       --------->YAB1     <---------bZIP60(1)                        <-----------GT1         -------- -------->TCP16(1)        --------->bZIP60(1)                       <-----------GT1       --------->AHL20(2) -------->PCF5          <-------GAMYB                        <---------ANAC46     <---------AHL20(2)= -------->PCF2  <---------MYB52(1)              <----------DOF2    --------->AHL20(2)   --------->TOE2(3) --------TCP16(2)      <-----------RAV1(1)<---------MYB52(1)---------->ID1       --------->AHL20(2) =   tggtcccatttgtaatctgttatttctgttgtcactttatattcgtttgtcttttgttttttggcgcattttaacatttgatatataatacattaaaaag  3517200       <---------ZAT14      <----------DOF2 ---------ANAC55(1) -------->O2 ---------ANAC58 ---------ANAC46 ---------ANAC55(2) ---------bZIP60(2) ---------ANAC58 ---------O2                     <---------ZAT2 -------->TGA1a                  --------->At4g35610 ---------TGA1a         <----------DOF2 ---------bZIP60(1)  <---------ARR11(3) -------->bZIP60(1)  --------->ARR11(3) -------->ANAC55(2) --------->GLK1(1) -----------DYT1    <---------CCA1(1)                    <---------O2 ---------GT1       --------->RVE1(1)                    <---------ANAC55(2) ---------->DYT1    <---------GLK1(1)        <---------ANAC58 -->DAG2            <---------RVE1(1)        <---------ANAC58           --------->YAB1 =========bZIP_DOF --------->ARR11(3)      <-----------GT1              <---------ICU4 -->DOF2           <---------ARR11(3)  <---------MYB52(1)--------->ANAC55(2)                     ---- ================bZIP_DOF        <---------At4g35610     --------->O2  <---------ATHB12       <------ ================bZIP_DOF        --------->ZAT2          <---------ANAC46            <---------MYB52(1)   ttacgtgactttacagaaacagatatctttttctgagctctgttttttcttgttctgtctcgtgatgttgtcaatgatgtctcaactgttatttgtcttt  3517300                                       --------->WOX13(1)                                      --------->AHL20(2)                              <---------ZAT14               --------->SPL1(1)                              --------->ZAT18              <---------SPL7                  ----------                              --------->ZAT14              --------->ZAT14 --------->AHL20(2)    ----                              <---------ZAT18   <------ZmHOX2a(1)  --------->MYB52(1)   <---------YAB1                         ---------->DOF2  <---------ICU4   <---------ZAT14 <---------AHL20(2)  ------                         <---------ZAT14 <---------ATHB12<---------------AtSPL8         <---------AHL20(2) ------->GT1    --------->ANAC58      <---------AHL20(2) <---------------AtSPL3    <---------DAG2---- ----DOF2       --------->ANAC58<----------DOF2<---------YAB1--------->SPL1(2)     <----------DOF2   tgtaaaattctcatgaaaacgaaatactaaagtgctctaattaatcactaggattgaaaactgtacggataacgaaattaatgagctttttttattgtac  3517400                                                                                             <-------                                                                                         <------MYB83                                                                                         <------MYB46(1)                                                                                     --------->MYB52(2)                                                                                     --------->MYB55(2)                                                                                     --------->MYB111(2)                                                                                     <---------MYB46(3)                                                                                    --------->ALFIN1                                                                                    <---------AtMYB61                                                                                   <------NtERF2<----                                                                          <------NtERF2<--------P     <---------bZIP60(1)                                               <---------LBD16<-------GAMYB     --------->bZIP60(1)                                        <----------DOF2    <-------GAMYB<----  <---------ZAT6                                             ------>ZmHOX2a(2)    <---------DEAR4(2) ----->AtSPL8                                               <------ZmHOX2a(2)    --------->ALFIN1 ----->TOE2(3)                                             --------->ARR11(3)    <---------DEAR3(1) ->TEIL                  <----------DOF2                   <---------ARR11(3)    <---------DREB2C(2) ----->TOE1(3)      <---------ALFIN1   --------->WOX13(1) <---------GLK1(1)     <---------ABI4(1)   cttagtgtcatcacatttgccatcaccctttgctccaaaatccatcacattgaaaacttgagatcccttttgaggcggaagaggcggtggttggactttt  3517500  Previous    Next  AGI:  At1g10640.1    Description:  polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G60590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66096.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65317.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 3515366    to: 3516975    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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