Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->ATHB12                                                             <--------HAHB4                                          ----------->GT1   <---------ATHB12                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             --------->ANAC46  ---                  <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     --------->ANAC46    <--                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------YAB1        --------->ZAT6      <--              <------ZmHOX2a(1) --------->RAP2.6(3)   --------->CCA1(2)      <---------ZAT14      --- ---------------WRI1  ----------->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ZAT14      --- -ANAC46   <---------LBD16<---------AHL20(2)         --------->ARR11(1)  --------->ZAT6         ----- -->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)------->TEIL  ------->TEIL<-----------GT1 <---------AHL20(2)   ataagttctaagtccaggatttatttgttaaaatgactgcaaaaatgtatatatagatatgaatcatttgttttaactctacactacatataatggtcct  3499000                                                    ------>ZmHOX2a(2)                                                  <---------AGP1                                                  --------->ARR11(3)                                             --------->ATHB12    --------------->AtSPL8                  <---------YAB1   <---------ANAC58                       <----------DOF2   <---------ANAC46                    <---------ALFIN1                                            ==   <---------ANAC58                   --------->ZAT14                                              -- ------>At4g35610                     <---------ZAT18                                            <--- -------At4g35610                     --------->ZAT18                    --------->KAN4(2)       ---- -------ZAT2                          <---------ZAT14         <---------ATHB12                <------ ------>ZAT2                      <-----------RAV1(1) ----------->GT1  <---------YAB1       --------- ------>STY1(2)                  xxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------YAB1         <---------YAB1 ->ZmHOX2a(1)     <xxxxxxxxxxxxxxxxsmallRNA(i) <---------WOX13(1)   --------->ICU4       <----------DOF2   agctggcttgtactaaatactgagaaccctagctaaatgctgcactttgattgatctggttcaaatcaagatgattatcccttgatcagttctttgattg  3499100                              --------->ANAC46                          <---------GLK1(1)                         <---------ARR14(2) ----------->GT1         --------->ARR11(3)                                       <-------TEIL ==============================HOX2a_HOX2a                                   <---------ALFIN1 ---->ZmHOX2a(2)         --------->ARR14(2)                                 ------>MYB83 ------AGP1              <---------GLK1(2)                                  ------>MYB46(1) ----->ARR11(3)         <------ZmHOX2a(1)                                  ----------->RAV1(1) ---WOX13(1)  --------->ARR11(3)                 ---------->CDC5          --------->AtMYB61 >ATHB12      <---------ARR11(3) ----------->RAV1(1)                     --------->MYB46(3)   -------   atctggttaaaatcaagatgtccataggattttcgcaacatagcccttgcctaagcgtctaggcgcttagacaaaaccaacacatacattacatctacga  3499200       ------->TEIL             <-------TEIL    --------->ANAC55(2)    --------->AHL20(2)    <---------ANAC55(2)    <---------AHL20(2)                   --------->ALFIN1   --------------->AtSPL8  --------->AHL20(1)            --------->TOE1(2)   <---------------AtSPL8  <---------AHL20(1)         ------->TEIL                                <-- -->ANAC46         <---------AHL20(2)            --------->CCA1(2)        --------->TOE1(2)       ---   aaaattatgtactctgtatatataaacaataaaatacatgtagagagagagagacggaccctacgagtgggagaaacatgagaagagagtatggagaaga  3499300                                                --------->LBD16                                               --------->LBD16                                               --------->ANAC46                                               --------->ANAC55(2)                                               <---------ANAC55(2)                                              <---------HSFB2a(2)                                              <---------LBD16                                        <---------MYB52(1)                                       <-------GAMYB                                      <---------ANAC58                                      <---------ANAC46    <---------ANAC58               <---------ARR14(2)--------->YAB1    <---------ANAC58            <---------TOE2(3)   ----------->TGA1                             <<<< -------ARR11(3)      <----------DOF2 <---------ANAC58                                 <----------DOF2 ------>ARR11(3)---------->ID1  <---------TOE1(3)   --------->ICU4       ------>ZmHOX2a(1)  <--------   gatgtttcatgcgcattcgtcgttctttctctctgaggtttcgttgttcccgtaatgacgatgcgcttccttctcctatttctctcgctctttccattct  3499400              --------->MYB59              <---------TOE1(3)        <----------DOF2        <---------------AGL15                                                              ----------        --------------->AGL15                                                              --------->ANAC58       <-----------------AGL3                                                              --------->ANAC58       --------------->AGL15                                                               --------->ANAC55(2)       <---------------AGL15                --------->ARR14(2)                            --------->LBD16     ---------->ID1        --------->AHL20(2)                ----------->TBP              ------>NtERF2  <----------DOF2          <---------AHL20(2)    <---------CCA1(2)                       <---------ANAC46 <<<<<TBF1    <---------TOE2(3)         *TSS<---------ARR14(2)      ---------->DOF2      --------->DEAR3(1) ----------------ANAC81<---------YAB1<----------DOF2         --------->AHL20(2)   ---------->DOF2   tcttcttttccttttttaggttactatgtttaattccctctttccaaatccatctctccctctataaatataaagagatagagagaaagagccgcgtaat  3499500                                              <---------ANAC58                                              <---------ANAC46                                              <---------ANAC58           <---------AHL20(2)                                  <---------ANAC58                   <---------AHL20(2)                                  <---------ANAC58            --------->ANAC46                    <--                        ---------->DOF2    <--------P  --------->At4g35610                        --- ->GT1              ---------->DOF2<----------DOF2     <---------At4g35610                  <--------   tttagatgaaaatgatgtttttcaaagaaagtcatggcttttctggttgcgtccatgagcttacacactacttaatttatacatatatatgcttctttta  3499600                                                           <---------TOE1(3)       <<<<<<<ZML2<------                                                    <---------ANAC58            --------->HSFB2a(2)                    --------->ARR11(3)              <---------ANAC58            <---------HSFC1(1) --------DOF2       <---------ARR11(3)         <-----------------AG             --------->HSFC1(1) -- ------------------>WRI1              <---------ARR11(3)   <---------TOE2(3)    <---------HSFB2a(2)-- --DOF2  <---------ALFIN1   <---------ICU4    <-----------GT1    <-----------RAV1(1)     --------->STY1(2)   ctttgtaagttccactcttagagatactaaacatgtccaatatgttttttacttacttggtaaggttttgttggacacatttctagaacctagatagtgt  3499700                                                                       --------->AHL20(2)                                                                       --------->AHL20(1)                                     <---------ANAC58                  <---------AHL20(2)    <------MYB83                     <---------ANAC58  --------->At4g35610    <------MYB46(1)       <---------HSFB2a(2)   <---------ICU4        <---------AHL20(2) ---ZAT6      >>>>>>>ZML2 --------->HSFB2a(2) <---------ARR11(3)      --------->AHL20(2) ------->ANAC58       <---------ANAC58    --------->YAB1        ----------->GT1 ------->ANAC58       <---------ANAC58   <---------YAB1<---------At4g35610   tacgctaggttttgttctagtgaagcttgtagaaaatgtgcttatcaaaatcatttcagcagaacatagtaattaaattagtcggattatatgtgatgaa  3499800                                                                     <---------YAB1                          <---------------------WRI1               --------->YAB1                        ------>ZmHOX2a(2)                          <---------ICU4                --------->ATHB12                                  --------->ICU4               <---------YAB1    <----------ID1                 <---------ICU4             --------------->AGL15                             <---------YAB1                       -             --------------------->WRI1                        --------->ICU4                       <            <-----------------AGL3                           --------->YAB1                ----------            ----------------->AGL3                          <---------YAB1  --------->ATHB12    <----       <---------ICU4 --------->ARR14(2)      <---------AHL20(2)--------->YAB1  --------->YAB1 ------   ttcttcacataagtaccatgtttggatcgacaaaaacaacaagggaatttttttgttataccatgataattatgttgatcatttgtaataggctagataa  3499900  Previous    Next  AGI:  At1g10586.1    Description:  transcription regulator. similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G10585.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70396.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 3496929    to: 3499440    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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