Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              -------                                                                                             --------                                                                                             ------>ZmHOX2a(2)                                                                                             --------                                                                                            <------ZmHOX2a(2)                                                                      ------>NtERF2         <--------                                                                     --------->DEAR3(1)    <---------GLK1(2)                  <------ZmHOX2a(1)                                  ----------->HVH21     --------->ARR14(2)        <---------ZAT18                                             --------->RAP2.3(1)    <---------ARR14(2)      --------->At4g35610                                         --------->DEAR3(1)  --------->MYB52(1)      <---------At4g35610                              --------->ANAC58              ----------->HVH21 ---------At4g35610   ----------->GT1                  --------->ANAC58             <---------HSFB2a(2) -->ZmHOX2a(1)  <---------TOE2(3)---------->DOF2       --------->ANAC46<------NtERF2<-----------RAV1(2)   tccgcttctgctcactctgaggaatattaaaaaccgaaagaccatcgttcttcttaaacgcctcaacatcgccgacgtagttcatcccagacggatccgc  3493300      --------->ZAT18      <---------ZAT18     ------->GAMYB    --------->MYB46(3)  --------->ARR14(2)  --------->MYB52(1)  <---------ARR14(2) ----------->HVH21 -----------HVH21 ------->ANAC46 --------ANAC55(2) ------->ANAC58 ------->ANAC58 ------->bZIP60(2) ------->ANAC55(2) --->NtERF2 ----NtERF2 ------>LBD16 ----->DEAR3(1) ------ANAC46 ---->ATERF1(1)                                                     --------->ANAC46 --->LBD16                                                         --------->LBD16       --------->LBD16 >NtERF2                                                  <---------HSFC1(2)  <---------ANAC58 -->ANAC46--------->ICU4                                  --------->HSFC1(2)------>MYB46(1) -->DEAR3(1)                                              --------->HSFB2a(1) <---------ANAC58 ->ATERF1(1)                               --------->MYB52(1)--------->At4g35610  <---------YAB1 ->MYB46(3)           <---------------AtSPL3         <---------ATHB12       ------>MYB83<---------ANAC55(2) -ATERF1(1)  <---------YAB1  <---------ZAT18    <------ZmHOX2a(2) ----------->RAV1(1)  <---------LBD16   cgcgtaaccgcacttatgaaacgtatggtactgctcttcaaacccaaacgatccaatcgaagcatcttccacagaacctagcttatgattccgcatccct  3493400                                   <------NtERF2                                 <------NtERF2                                 --------->ATERF1(1)                                ------>NtERF2                               --------->TCP20                               <---------DEAR3(1)                               --------->TCP15(1)         <---------ICU4                               <---------PCF5            <---------YAB1                               <---------PCF2       <---------At4g35610                              <------NtERF2         <---------ZAT2                              --------->ATERF1(1)   --------->At4g35610                             <---------ATERF1(1)    --------->ZAT2                             --------->LBD16      <---------ALFIN1                            <---------DEAR3(1)    <-----------RAV1(2)                --------->REM1(2)                            --------->ALFIN1    ----------->RAV1(1)     <---------YAB1           <---                           <---------LBD16      <---------ALFIN1   <---------ZAT6   --------->ALFIN1                          <---------ANAC58     --------->RAP2.3(3) ----------->GT1<---------ANAC46---                          <---------ANAC58     --------->ZAT18    <------MYB83    <---------bZIP60(2)                       --------->ARR14(2)    --------->PCF2       <------MYB46(1) --------->O2   <---           <----------DOF2<---------ANAC46   ------>NtERF2--------->ATHB12        <---------O2  -----    <------ZmHOX2a(2)  <---------ARR14(2)    <---------ATERF1(1)<--------P---------->DOF2      <-----   tgagcgatcccgtctttcgcatacggatgcgcggggccgaacatcggagcccacagctgatcatgggtagggttataaaagacgacgtgttgagtcgggt  3493500                                                                     <------NtERF2                                                                   <---------DEAR3(1)                                                                   --------->RAP2.3(2)                                                                   --------->DEAR3(1)                                                                  --------->ERF1                                                                  --------->RAP2.3(1)                                                                  --------->RRTF1(1)                                                                  --------->ATERF1(1)                                                                  --------->RAP2.6(1)                                                                 <---------ATERF1(1)                                                             --------->AtMYB61                                                      <---------ANAC46                                                    <---------ARR11(1)    --------->ATHB12                                                    --------->ARR14(2)   <---------ATHB12                                                   <---------CCA1(2) --------->RAP2.3(1)                                                  <---------RAP2.6(3)--------->ATERF1(1)           --                                 <------NtERF2    <---------SPL7--------->ANAC46                   <-                                ------>NtERF2    <---------ANAC58<---------RAP2.3(1)             ----                               --------->DEAR3(1)<---------ANAC55(1)<---------RAP2.3(1)          <---                          <---------MYB52(1)     --------->ANAC55(2)<---------ATERF1(1)          <---                          --------->DOF5.7(2)    <---------ANAC58------>NtERF2                  <---- ------WRKY38(1)        --------->ANAC58         <---------ANAC46--------->LBD16            <-------- ------>WOX13(1)        --------->ANAC58       <---------ZAT18  <---------DEAR3(1)       --------->TOE2(2) ------WRKY12           --------->ANAC46       --------->ZAT18 <---------LBD16         >>>>>>>>>MYB98 ---->WRKY18(1) <---------WOX13(1) <-----------HVH21<---------ARR14(2)--------->DEAR3(1) --------->TOE1(2) ------HVH21 <---------YAB1   --------->MYB46(3) <---------ANAC55(2)------>NtERF2  <----------DOF2---   caatcggcttcgatttcgattgattcacgttagccaccgtgagagctagtgccgtatcgtctacctccggcgccgatgatttcgcctttaacatacgagg  3493600          ------>NtERF2          --------->LBD16        <---------LBD16      --------->GLK1(2)     <---------ARR14(2)     --------->ARR14(2)                                    <-------TEIL     <---------GLK1(2)                                    <------ZmHOX2a(2) ------->At5g28300                                       --------->AGP1 -----NtERF2<---------ANAC46                             <---------ARR14(2) ----->ALFIN1                                            --------->ARR14(2) ------ANAC46        --------->MYB52(1)       <------ZmHOX2a(1) ------DEAR3(1)   --------->ANAC58          <---------TOE1(2)       <---------TOE1(2) -----ABI4(1)     --------->ANAC58          <---------TOE2(2) <---------CCA1(2) -TOE2(1)<---------LBD16       ---------->ID1 ===================HOX2a_HOX2a -------->GT1   <------ZmHOX2a(1)    <<<<<<<<<TBF1      --------->At4g35610<-----------GT1   cggtgaagattccggcgaggaagcaacggcttcgtcttcttcttcgtaggattgaatcagatccatctctcacgattttgctctcttaccacaagtgttt  3493700                         <----------DOF2                                                      <------                   <-----------GT1                                 --------->MYB52(1)         -------               --------->ARR11(3)     *TSS                      --------->YAB1                <------               <---------ARR11(3)  --------->HSFB2a(2) ------>ZmHOX2a(1)               <---------RVE1(1)             ----------->ARR10     <---------HSFB2a(2)--------->TOE2(3)   ------------>CBF  <--------   gagaaactttatactgagattttgcctcttttctcttcgacaagggtttcaaaattcctaaatctaaaataagggttgcaatttgtgcgatatttagatt  3493800                                     <---------At5g28300        <-----------GT1             <-------- ---ARR11(3)                  <-----------GT1        --------->AHL20(1)                 <-------GAMYB -->ARR11(3)              <----------DOF2            <---------AHL20(1)                --------->MYB55(2) ---GLK1(2)            <-----------GT1               <---------AHL20(2)                <---------MYB46(3) -TOE2(3)           <---------AHL20(2)               --------->AHL20(2)                ----------->GT1   ttcaaatatagcctcttactatttttttcttttcacatttaccccaatagtgtattttattgacatttacatcccactgtcttactcggtggttaaaatt  3493900               >>>>>>>>>RAP2.2               --------->TOE2(3)             ------>MYB46(1)             ------>MYB83   --------->GLK1(2)         --------->ANAC46                      --------->ANAC58   <---------ARR14(2)        --------->ANAC58                      --------->ANAC58                 <   <-----------ARR10         --------->ANAC58   --------->LBD16  --------->MYB52(1)       <----------   --------->ARR14(2)   --------->ANAC58       <---------LBD16--------->ANAC46        <---------ANAC58  <---------GLK1(1)     --------->ANAC58      <---------LBD16 --------->ANAC58        <---------ANAC58  <---------CCA1(2)     --------->ANAC46  --------->AHL20(2)  --------->ANAC58  <---------TOE1(3)   < -YAB1      --------->WOX13(1)    --------->MYB52(1)     --------->YAB1         <---------TOE2(3)  --   atgcaaatctggaccaatctaaaatcacgccaagccaaactgaattaaaccgggatgaataaaaacgaaacgacaacgttttaaggtttcttatgttgac  3494000                                                                 ------->MYC3                                                                --------->TGA1a                                                                <---------TGA1a                                                               ------->MYC3               <---------ANAC58              <---------YAB1                              --------->MYB52(1)              <---------ANAC58            --------->YAB1                              <---------MYB52(2)                <---------ANAC46           <---------YAB1               <---------At4g35610    <-------MYC3             <---------DOF5.7(2)    <---------ARR11(3)         --------->WOX13(1) ---------->DOF2<-------MYC3         <---------MYB52(1) ---------WRKY12            --------->ANAC58      ========================bZIP_DOF    --------->DOF5.7(2) -RAV1(1)--------->YAB1     --------->ANAC58     --------->AHL20(2)                 <---------ZAT6 ---------WRKY38(1)       ---------->DOF2        <---------AHL20(2)                 <---------ANAC58 ------->WRKY18(1)        ================================================bZIP_DOF  <---------ANAC58<   ggtcaacatatttatcataatcgaactcaaaagcaattactcatctcatatttaaagaactaacacatgtgtgaaaaaacacactagcgttagcgtagac  3494100                                                    --------->ZAT14                             -----                                                    --------->SPL7                              -----                                                  --------->LBD16                               <----                                                  <---------SPL7                                -----                                                 <---------ANAC58                              <-----                          <---------AHL20(1)     --------->ANAC55(2)                 <---------ARR14(2)          <---------GLK1(1)                      <---------ANAC58                    --------->ARR14(2)          --------->GLK1(1)--------->AHL20(2)   --------------->AtSPL3      <------ZmHOX2a(2)  <----- --------->ATHB12         --------->AHL20(1)    --------------->AtSPL8  <---------WOX13(1)    <------ ---------YAB1           --------->AHL20(2)   <-----------GT1      --------->TOE2(3)--------->WOX13(1)   ttatcatttgggatttcatgcttcaaaatatatatatccatagatgattttccgtactctctcttctatccttgatggatcaatgccaatccgactaatg  3494200  Previous    Next  AGI:  At1g10580.1    Description:  transducin family protein / WD-40 repeat family protein. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G54520.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ51074.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40889.1); similar to hypothetical protein OsJ_010704 [Oryza sativa (japonica cultivar-group)] (GB:EAZ27221.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 3491282    to: 3493738    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g10585.1    Description:  transcription factor. similar to transcription regulator [Arabidopsis thaliana] (TAIR:AT1G10586.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64351.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 3493941    to: 3495145    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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