Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           ------->GAMYB                                        --------->MYB46(3)                                        <---------MYB52(2)                                      --------->MYB52(1)                                      ------>MYB83                                      ------>MYB46(1)                                     --------->MYB55(1)                                    <---------MYB111(1)                                    <---------MYB59                                          --------                                    <---------MYB46(2)               --------->REM1(1)       <-------                                 --------->ARR14(2)                  --------->bZIP60(2) <---------HSFB2a(2)                                 <---------ARR14(2)                ----------->RAV1(1)   --------->HSFB2a(2)                   ---------->DOF2  <---------MYB52(2)          --------->ANAC46        <---------LBD16         <---------YAB1         <------ZmHOX2a(1)               --------->ANAC58     --------->ATHB12         ----------->HVH21--------->CCA1(2)------->TEIL         --------->ANAC58    <---------ATHB12   tgtaagcaggtatgactgagagaaagagagatgaggaacctaacgaacctctaaaaccattgaactaagcaacatcacaactagaaatcatcgggaactc  3412400                                              --------->AHL20(2)                                              <---------AHL20(2)                                         <---------------------WRI1                             -----                                        --------->ANAC58                                        <----                                        --------->ANAC58                                        -----   --------->AHL20(2)               <---------ARR14(2) <---------ZAT2                        <------- ->GLK1(1)                          --------->ARR14(2) --------->ZAT2      ------->TEIL   --------->TOE1(2) --GLK1(1)         ------->TEIL    --------->GLK1(1)---------->DOF2--------->YAB1         --------->TOE2(2)   agaaattgaatatgcaaaatgaatataaaacttgagcaaatccagcaataaaatcaaagctggaactaatcgaaatgaaactcgaagaaatacctatgaa  3412500                                                                                              ------>ZmHOX2a(2)                                                                                              =======                                                                                             <------ZmHOX2a(2)                                                                                             ========                                                                                            ---------                                                  <---------YAB1                      --------->HSFC1(2)                                         --------->WOX13(1)                           <---------ZAT2                              ------->MYC2      --------->CCA1(2)                     --------->ZAT2                              ------->MYC3  --------->YAB1                            --------->At4g35610                              <-------MYC2------>MYB83                                <---------HSFC1(2)                              <-------MYC3------>MYB46(1)                             --------->HSFB2a(1) ---->ARR14(2)               --------->ANAC58  <---------ARR14(2)                     <---------At4g35610 -----ARR14(2)               --------->ANAC58  --------->ARR14(2)                     <---------HSFB2a(1) -->TEIL---------->DOF2    <---------ALFIN1<---------ATHB12  <------ZmHOX2a(1)  --------->At4g35610 --ATHB12--------->DAG2<------ZmHOX2a(1)--------->AtMYB61---------->DOF2     ---------->DOF2<--------   tccgatgtcaaaaagagaagaacaaggacacacgttcttcgaccaatcagatatgatatcaaaggactctcaagagaccaagagcggaagctccgatcgt  3412600                                                               <------NtERF2                                                             <---------ANAC58                                                             <---------ANAC46                                                             <---------ANAC58                                                            --------->ATERF1(1)                                                            <------NtERF2                                                           <---------ORA47(2)                                                           <---------RAP2.3(1)                                                           <---------ERF1                       <---------TOE2(3)                   <---------DEAR4(2)         <---------ANAC58                                 <---------RAP2.6(2)         <---------AtLEC2       ----------->GT1           <---------DEAR3(1)         <---------ANAC46      <------ZmHOX2a(1)          <---------RAP2.3(2)         <---------ANAC58   <-----------RAV1(2)      --------->ARR14(2) ======================HOX2a_HOX2a                   <---------ARR14(2) ======================HOX2a_HOX2a          --------->LBD16------>NtERF2                <---------REM1(1) >ARR14(2)      <------ZmHOX2a(1)           ------>NtERF2 <---------RAP2.3(3)          --------->ARR11(3) -ARR14(2) --------->ALFIN1<-------TEIL    --------->DEAR3(1)<---------O2  --------->ALFIN1  <------ZmHOX2a(1)   cgaaattatctgcgtggaggaaattagggttcaggagtgaaatcgccgagaaacgaataggcggcgtggaatcaaatgtggagcaagaagatgtaggaga  3412700                                                                             <-------GAMYB                                     --------->HSFB2a(2)                    <---------MYB46(3)                              --------->DAG2                      ---------->DOF2                         ------>ZmHOX2a(2)                   --------->ARR14(2)                       <---------AGP1<---------HSFB2a(2)     <---------ARR14(2)                       <---------ARR14(2)                   <------NtERF2   <---------DEAR3(2)      -                  --------->ZAT2 <----------ID1            --------->LBD16 <---------DEAR3(1)    ----            <----------ID1   ---------->DOF2              --------->LBD16------------>AtMYB77   <----     --------->TOE1(3) --------->ARR14(2)                <---------LBD16----------->HVH21---------->DOF2   aatggaacctgaaaacgacgagctcgatctgaaaagcgactagaagatggagcaatttcgccggaatcgaaagcgcgacggttgcaacttgcaaagagcg  3412800                                                          <------------CBF                                                        --------->AHL20(2)                                                        <---------AHL20(2)                                                  <---------ANAC55(1)                                                  <---------ANAC58                                                  <---------ANAC55(2)                           --------->YAB1         <---------ANAC46                     <---------YAB1               --------->ANAC55(2)                   --------->DAG2         <---------DAG2   <---------YAB1      <---------ANAC58                         ---------->DOF2         <----------DOF2--------->CCA1(2)     <---------ANAC58                      --------->At5g28300 -------->ATHB12 <------MYB83                --------->ZAT2<---------WOX13(1)     --------->ANAC46 ----->MYB52(1)  <------MYB46(1)            ------>ZmHOX2a(1)                  <---------REM1(2) -----SPL7   <-----------RAV1(1)            *TSS  <---------ANAC58          --------->At4g35610  ----   aacgattggccctttttgttggtatgatatgatgacttctctcttcctgcttgcgtgtttaattgctgaatttagggcatcttcacggtaaaagtgatag  3412900                                  <---------AHL20(2)                                  --------->ARR11(3)                                  --------->AHL20(1)                                  <---------ARR11(3)                                  --------->AHL20(2)                              --------->YAB1      --------->ZAT14                                  <-                             <---------ATHB12     <---------ZAT14                                  <-                           --------->WOX13(1)     --------->ZAT18                                  --                         ------------>CBF         <---------ZAT18                                 xxx                 <---------AHL20(2)           <-----------RAV1(1) ----------->GT1                 xxx                 --------->AHL20(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <-------TEIL             xxx                 --------->AHL20(2)<---------AHL20(2)           --------->MYB52(1)        <xxxxxxxxxx  --------->ARR11(3) <---------AHL20(2)  ----------------->AG<---------ICU4              ------->TEIL  <---------ARR11(3)--------->AHL20(2) <-----------GT1       --------->YAB1      <-------TEIL  ------ ------>DOF2    --------->AHL20(2)<---------AHL20(1)        --------->AHL20(2)  --------->CCA1(2)----   aaagtatctcaaaaaaaaaaaaattaatccaatcaatatattttccgaatggtgcagttcaaataataacgaaaatacatagatacatatgtatatgtaa  3413000                          <---------ANAC58                          <---------ANAC58                         <---------ANAC58                         <---------ANAC46                         <---------DEAR3(1)                        <---------LBD16                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                --------->ZAT14                <---------ZAT14                xxxxxxxxxxxxxxxx>smallRNA(s)               <xxxxxxxxxxxxxxxxsmallRNA(s)              xxxxxxxxxxxxxxxx>smallRNA(s)             xxxxxxxxxxxxxxxx>smallRNA(i)            <xxxxxxxxxxxxxxxxsmallRNA(i)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           xxxxxxxxxxxxxxxx>smallRNA(i)         <---------ZAT6xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxx>smallRNA(i)         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <---------ICU4      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------YAB1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             --------->ICU4    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             xxxxxxxxxxxxxxxx>smallRNA(i)   <---------YAB1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->At4g35610 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->YAB1 --------ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------At4g35610 --------GLK1(2)<xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->ARR11(3)   <-----------RAV1(1)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      ----------- xxxxxxxxxxxxxxxxx>smallRNA(se3)             <----------DOF2<---------At5g28300    xxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------AHL20(2) xxxxxxxxxxxsmallRNA(se3)<---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->AHL20(2) ---->DOF2<-----------HVH21     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----->ICU4xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->AHL20(2)   agattttgatactgttacagcactgttgcggtgcgattttggatgcggttttagtcatcatttacagcttcagttcgaagaaaataaatcactggttaaa  3413100                                                                                          --------->YAB1                                                                                          <---------ICU4             xxxxxxxxxxxxxxxx>smallRNA(i)                                                <---------YAB1             xxxxxxxxxxxxxxxx>smallRNA(s)                                             <---------YAB1           <---------ICU4                                                             <---------AHL20(2)          <---------ATHB12                                                        <----------DOF2    ------->GAMYB                                                              <---------AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  --------->AHL20(2)   <------------AtMYB77                                       <----------DOF2  <-----------GT1      <  <---------At4g35610            ------>ZmHOX2a(1)   <----------DOF2       <---------AHL20(2)    ----  --------->At4g35610 --------->GLK1(2)              <---------DAG2       --------->AHL20(2)     <---  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <-------TEIL ---------->ID1  --------->AHL20(1)    ----- >GT1     --------->AHL20(2)   ----------->RAV1(2)<---------ALFIN1        <---------AHL20(2) -------- xxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-----------GT1  <---------AHL20(1)<--------   tgacaactgtcaataaatgctgagaatcgtttctcctgtgaaaaacgttcatccacttttttctctttctctctaatttattttcttttttattattatt  3413200         --------->ARR11(3)         <---------ARR11(3)      --------->ANAC55(2)                                ----------->GT1           <---------ATHB12 ---------WOX13(1)                                <------ZmHOX2a(1)                --------->MYB46(3) ----->AHL20(2)                                 <---------TOE2(3)         <-----------GT1 ------AHL20(2)                             <---------DAG2--------->At5g28300<----------DOF2      --- ---->AHL20(2)                              <----------DOF2               <---------AHL20(2)     ---- ->AHL20(2)                              <-----------------AGL1     <---------ANAC58     <---------YAB1 -YAB1<---------ANAC55(2)                <-----------------AG       <---------ANAC58   --------->YAB1   taattgataagtatctcattcacatactccgatggaaatggtctcacttttaggaaatacagtaaattttgcttatttactttcaaccattgtaatagag  3413300  Previous    Next  AGI:  At1g10390.1    Description:  nucleoporin family protein. similar to nucleoporin family protein [Arabidopsis thaliana] (TAIR:AT1G59660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62858.1); contains InterPro domain Peptidase S59, nucleoporin; (InterPro:IPR007230) Range:  from: 3407025    to: 3412844    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version