Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->YAB1                        <---------ICU4                                                           ----                        --------->ATHB12                                                       <-----                        <--------HAHB4                                             <---------AHL20(2)                    --------->LBD16      <---------ANAC58                          --------->AHL20(1)              <---------ICU4  <---------ANAC58      <---------AHL20(2)             --------->AHL20(2)        ---------->ID1 <---------ATHB12  <---------ANAC46                     --------->AHL20(2)<----      --------->MYB59 <---------ARR11(1) <---------ANAC58            --------------->AtSPL8    <----- ----DOF2     --------->ATHB51<---------ANAC58   --------->YAB1     <---------ANAC46     <---------TOE2(3)   gtaatagtttggcccattattccgaatcatttccttgttaattgagtgtattaataaatgttttggactggtttgtaccaaaaaataaaataatgttaag  3355200                             ----------------->AGL1                            <-----------------AGL1                                                <--             --------->ARR14(2)                                                                 -----             <---------ARR11(3)                ---------->DOF2                                 ------ ----->TOE1(3)--------->CCA1(2)   --------->RAP2.6(3)                                         ------- ----TOE2(3) --------->ARR11(3)  <---------ARR14(2)                                           ------- -----At4g35610        <-----------GT1 ----------->RAV1(1)                                    <------ ----TOE1(3) <---------ARR14(2)  --------->ARR14(2)                                          --------   cttagaagattagaagatatacaataaactttccaaatcggcaacaaaacaaagtatttgatattggtttgatgtgtttcacgaccatagaacaagacgg  3355300    <-----------GT1                             <---------ANAC55(2)     <---------AHL20(2) -----TEIL                                      --------->ANAC55(2)    <------------------------ANAC81 ---->At5g28300<-----------RAV1(1)              <---------ANAC46    <---------CCA1(1) ----->GT1 <---------YAB1                       <---------ANAC58    <---------RVE1(1) -------->AtSPL8                                <---------ANAC58   <---------ARR14(2)            ---- -------->AtSPL3                                <---------ANAC55(1)<---------ARR11(3)       --------- ---------AtSPL8       ---------->DOF2        <-----------GT1      --------->ARR11(3)       <-------- ->RAP2.6(3)  ------->TEIL            <---------YAB1             ----------->ARR10  ------>ZmHOX2a(2)   tacattatactatatgaatgttggcaaaagacaagtttttatgtttagttacgtttctctgcaaacgaagatattttttagtttgatcggttttctacaa  3355400                                                        <---------At4g35610                                                        --------->At4g35610                                                      <-----------RAV1(2)                                                <---------HSFB2a(2)                                                >>>>>>>ZML2                                                --------->HSFC1(1)                                                <---------HSFC1(1)                                                --------->HSFB2a(2)                  --------->ARR14(2)                                           --------->HSFC1(2)                        <---------ARR14(2)                                           <---------HSFC1(2)                     --------->RAP2.6(2)         <---------ATHB12                  --------->HSFB2a(1)               <---------ZAT14  --------->ARR14(2)                       <---------KAN4(1)              <---------ANAC58  <---------ARR14(2)                       --------->KAN4(1)              <---------ANAC46          < ----->MYB52(1)    <-----------------AG    <---------HSFB2a(1)            <---------ANAC58 <---------MYB46(3) >HSFB2a(2)        ------>ZmHOX2a(2)     <---------GLK1(2)    --------->ALFIN1    <---------ANAC46  < -HSFB2a(2)    <---------YAB1<<<<<<<<<MYB2<---------KAN4(2)--------->ATHB12  --------->ZAT14 <-------   accggttccaaatcaatatgatcccattttggttttctcttcagaatgttctagaatcagatgagtgggacttgttgagtacagccgtataggttgtttg  3355500                                            <----------DOF2                                        <-----------GT1                                    <---------AHL20(2)                                    --------->AHL20(1)                                    --------->AHL20(2)                                   --------->YAB1        --------->ARR11(3)         --------->AHL20(2)        <---------ARR11(3)     ------>ZmHOX2a(2) ---------DAG2        <---------ICU4<---------AHL20(1) ----------DOF2      <---------ATHB12<---------YAB1   <---------ALFIN1   *TSS                 ------- --ANAC46  <----------DOF2 <---------YAB1<-----------GT1                <---------LBD16       <<<<<<<   ggctttatgaaatctttaggcccataattctgatccattatatttccttttctcccctacttgtaagggtttattctggattactcatttgccttataac  3355600                                        --------->At4g35610                                      --------->YAB1                                     <---------ATHB12                                <------NtERF2                               ------>NtERF2                               --------->LBD16                               <---------ATERF1(1)                              --------->DEAR3(1)                              <---------ATERF1(2)                              --------->ATERF1(2)                              --------->RAP2.3(2)                              <---------DEAR3(1)                             --------->ORA47(2)                             --------->ERF1                             --------->RAP2.3(1)                             <---------LBD16                             --------->ATERF1(1)                            <---------At4g35610               <---------ANAC58                            --------->At4g35610               <---------ANAC46                            <------NtERF2                 <-------GAMYB       <<<<<<<<<TBF1        ------>NtERF2           ---------->DOF2                     --------->ARR14(3)  <---------ANAC58         --------->ANAC46         <------ZmHOX2a(1)                   <---------GLK1(2)  <---------ANAC58        --------->SPL7<---------YAB1   <---------MYB46(3)             <---------ARR11(3) -->YAB1     --------->LBD16<---------ATERF1(1)<------ZmHOX2a(2) <-----------ARR10      --------->ARR11(3) <<<<<<<<<<LFY          <-----------HVH21    --------->GLK1(1)<---------ANAC58          <---------ARR14(3)   aatggcttcttcttccgaagagattgtgtccgccggcgaatcatcagagatcgaggaagcggttgcgagtctaaccatgtcttctaacaagattttgttg  3355700                                         ------>NtERF2                                        <---------ANAC58                                       --------->ATERF1(1)                                       <------NtERF2                                      <---------ATERF1(1)                                      ------>NtERF2                                      --------->ABI4(2)                                     ---------                                     ----------->HVH21                                 --------->LBD16                                     --------->ALFIN1                                 --------->DEAR3(1)                                     <---------DEAR3(1)                               <---------DEAR3(1)                                    <-----------HVH21                                --------->ATERF1(1)                         <------ZmHOX2a(2)--------->ANAC58                           <---------LBD16                        <---------ARR11(3)<------NtERF2           ------->MYC3       <------NtERF2                        --------->ARR14(2)--------->ANAC58    --------->ZAT14       ------>NtERF2<---                     --------->HSFB2a(2)<---------ANAC58      <---------ZAT18       <---------RAP2.3(1)                 <----------DOF2  --------->ALFIN1            --------->ZAT18      <---------DEAR3(1)           <---------ANAC46       <---------DEAR3(1)          <---------ZAT14     --------->ZAT18----           <---------ANAC58   ---------->DOF2          <---------YAB1      <------ZmHOX2a(1)---------           <---------ANAC58  --------->ANAC46    --------->GLK1(2)<-------MYC3--------->MYB52(1)<---- <---------GLK1(1)   <---------HSFB2a(2)<---------ANAC46--------->YAB1   <---------ANAC46 ---------->DOF2   acgagttccgatggcgagtctttcgagatcgacgaagcggtggcgcgtaagtttctgatcatagtgcacatgatggaggataactgcgccggtgaagcaa  3355800                           ------>ZmHOX2a(1)                       <---------ARR14(2)                       <---------ARR11(3)                       --------->ARR14(2)                       --------->ARR11(3)                      <---------GLK1(1)                      <----------TaMYB80                      --------->GLK1(1)                    <-----------HVH21                     ----------->ARR10                    --------->bZIP60(2)                     ---------->TaMYB80                   --------->ANAC58                     <---------KAN4(2)                    --------->ANAC58                     --------->ARR14(2)                   --------->ANAC46                     <---------ARR14(2)                  ------->TEIL                  --------->LBD16              <---------HSFB2a(2) >ANAC58    ----------->HVH21                 --------->ANAC58 ------ARR14(2)  --------->LBD16              --------->ANAC58  <---------ATHB12               <----- ----->ARR14(2) <---------LBD16              --------->ZAT18  --------->WOX13(1)            <------ZmHOX2a(1) >ANAC58   <-----------HVH21       --------->ARR11(3)  <-------TEIL------->TEIL           --------->ALFIN1 -----GLK1(1)  <---------LBD16     <---------ARR11(3)<---------------AtSPL3    <----------ID1<-------   ttccgcttgaaaatgtcaccggggatatcctctccaagataatcgagtacgcgaagatgcacgtcaatgaacctagtgaagaagacgaagacgaggaggc  3355900                                              ------>ZmHOX2a(2)                                             --------->CCA1(2)                                             <------ZmHOX2a(2)                       --------->TOE2(3)                     --------->ANAC58       --------->AGP1                           --------->TOE1(3)                     --------->ANAC58       <---------ARR11(3)                       <---------MYB59                   <---------PCF2           <---------AGP1                       <---------MYB46(2)                  <---------SPL7            --------->ARR14(2)                   <---------MYB111(2)                  ----------->HVH21         <---------ARR14(2)                   <---------MYB55(2)              <---------TGA1a               --------->ARR11(3)                   <---------MYB52(2)              --------->O2           --------->DAG2                         ------>NtERF2     --------->GLK1(2)              ---------->DOF2                      <---------At4g35610 >>>>>>>>>TBF1--------->TGA1a   --------->AtLEC2                  <---------ICU4 --------->MYB46(3) -NtERF2      =================================bZIP_DOF          <---------ATHB12<---------MYB111(1) --DEAR3(1)   <---------O2   <-------TEIL ----------->ARR10     <---------ARR11(3)------->GAMYB   <--   gaagaagaatctagactcgtgggacgctaagttcatggaaaagctagatctggagaccatcttcaaaatcattctcgctgccaactacctaaacttcgaa  3356000                             <---------YAB1                            <---------ANAC46                           <---------At4g35610                         <--------P                        <-------GAMYB                       <---------MYB46(3)                    --------->MYB52(1)                                                          -----                    ------------>AtMYB77                             --------->ARR11(3)       -------                <---------STY1(2)                                    <---------ARR11(3)       -------                --------->STY1(2)                                    <---------GLK1(2)        -------               --------->ANAC58           <------ZmHOX2a(1)         <---------RVE1(1)       <--------        --------->ARR14(2) --------->At4g35610              <---------SPL7                <----------        <---------ARR14(2)<---------MYB46(3)              <---------------AtSPL3 --------->HSFB2a(2) ----ZmHOX2a(1)--------->ANAC58          <----------ID1  <------ZmHOX2a(1)       <---------HSFB2a(2)   ggacttctcggtttcgctagccagacggttgctgattacatcaaggacaaaacaccagaggaagtacgagagattttcaacatcgagaacgatttcacgc  3356100  Previous    Next  AGI:  At1g10230.1    Description:  ASK18 (ARABIDOPSIS SKP1-LIKE 18); protein binding / ubiquitin-protein ligase. similar to ASK15 (ARABIDOPSIS SKP1-LIKE 15), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G25650.1); similar to unknown [Populus trichocarpa] (GB:ABK94461.1); contains InterPro domain SKP1 component, POZ; (InterPro:IPR016073); contains InterPro domain SKP1 component; (InterPro:IPR001232); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897); contains InterPro domain SKP1 component, dimerisation; (InterPro:IPR016072) Range:  from: 3355573    to: 3356361    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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