Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     ---------->ID1  <------------------------ANAC81 -----YAB1                                                               --------->ZAT14 -->GT1                           <---------ZAT18                        <---------ZAT14 >AGL2                    --------------->AGL15                      <-----------GT1 -AGL2                    <---------------AGL15                  --------->ARR11(3) -AG                     ----------------->AGL1                  <---------ARR11(3) -AGL1                   <-----------------AGL1                  <---------AHL20(2)             ----- >AGL3                   <-----------------AGL2                  --------->AHL20(1)           ------- -AGL3                   ----------------->AG                    <---------AHL20(1)           <------ >AGL1   <----------DOF2<-----------------AGL1                   --------->AHL20(2)    <---------TOE2(3) >AG <----------DOF2 <----------DOF2  ------->TEIL              --------->AHL20(2)<----------DOF2   tatttgtctttctttctctcattcttttccatattgggcgcatctaaaacatgtcgaacaccataaatatattactgtagttttcttttaatgtttctaa  3345200                                                                                                   --                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                         <---------------AGL15                          <--------P <-                                         --------------->AGL15                         <-------GAMYB ----->DOF2                          <-----------GT1                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -->HSFB2a(2)                  <---------AHL20(2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---HSFB2a(2)                  --------->AHL20(2)               --------->ATHB12      <---------MYB46(3)   aagaatataagtatatagaactgatatatgaaattatatataccttgtaatggtatgtgtgattcttcattgaagggtgatcaaatgctggttgcttgaa  3345300              ------->TEIL              <---------ARR14(2)              --------->ARR14(2)              <-----------ARR10              <---------ARR11(1)              <---------ARR11(3)                 <---------ARR11(3)             <---------ARR14(1)                  <---------AHL20(1)             <---------CCA1(2)                   --------->AHL20(1)        <---------AHL20(2)            --------->LBD16              ---------->DOF2                 --------->ANAC55(2)       --           --------->ANAC55(2)         <---------YAB1                    <---------ANAC55(2)      ---           <---------ANAC55(2)       <---------ICU4                --------->AHL20(2)           <----     --------->ANAC46                <--------HAHB4              --------->TOE2(3)     --------->AHL20(1)     <---------ALFIN1                --------->YAB1            <---------TOE2(3)       <---------AHL20(2) ------->GLK1(1)                    <---------ATHB12 ---------->DOF2<---------ICU4     --------->ARR11(3) --------GLK1(1)                    <---------YAB1  <---------AHL20(2) <-----------GT1 <---------AHL20(1)   gaaatccacacatccgtatctttctccatctatactctatcattacagcaatatataaagaagttaacatttattacttaattgtataatatatagagaa  3345400                       <---------AHL20(2)                  <---------ARR11(3)                <-------GAMYB                  --------->ARR11(3)        <---------ZAT2                  --------->AHL20(1)        <---------At4g35610                  <---------AHL20(1) <---------ICU4--------->MYB52(2)                   -------------                 --------->CCA1(2)   ------>ZmHOX2a(2)                               <---------ARR11(3)                <---------ARR11(3) --------->ARR11(3)                     <---------HSFB2a(2) <------ ------->At5g28300--------->AHL20(2) =================================HOX2a_HOX2a    --------->ARR11(3) -------->GT1   --------->ARR11(3) <---------ARR11(3)          ------>ZmHOX2a(1)    <---------CCA1(2) -----ZAT14<---------YAB1   --------->TOE2(3)      <---------MYB46(3)     --------->HSFB2a(2) -------   cagtaacatggttatgaagatatattaaaaccttgatgatcttgacagcaggtttgttgatagtccttagtctcttctcgatttctaaatcttcaacttt  3345500                                            <---------YAB1                                          <---------ICU4                                          --------->YAB1                                         --------->ICU4                                       <---------ICU4                                      <---------YAB1                                      <---------AHL20(2)                                --------->ATHB12             <---------ALFIN1                  ---------->DOF2   --------->YAB1         ----------->RAV1(1) ---------->TaNAC69(2)   --------->ICU4--------->YAB1    <-------TEIL         <---------CCA1(2) ----DOF2 --------->At4g35610  <---------YAB1      ---------->DOF2         <-------TEIL -->TOE2(3)   --------->REM1(1)--------->ICU4  <-----------GT1     --------->YAB1   agaaaggctcttagcttcaacaaagtcattgttatgatttataattatgttaccaaagatgcaacacattaagaacatccatatcacttccatttgaatc  3345600                                                         ----------->TBP <------ZmHOX2a(1)                                                         --------->CCA1(2)                                                        <---------AHL20(1)                     --------->ATHB12                   --------->AHL20(1)                  <--------            =================================================bZIP_DOF  <---------------AtSPL8            <---------O2                          <----------DOF2     <------ZmHOX2a(1)     ---------            <---------TGA1a                --------->ARR11(3)    --------->ALFIN1        --------->WOX13(1)          --------->CCA1(2)       *TSS     <---------ARR11(3)<---------TOE2(3)         ------------>CBF   aacaatagagagagacgagagagttattgattttgaagcatggaagataaccctttaatatataaggctggaggaggaacaaaacatttttcaattaatt  3345700                                                          <---------WRKY18(1)                                                         --------->WRKY38(1)                                                         --------->WRKY45       <---------WRKY18(1)                               --------->WRKY12 <---------ZAT6      --------->WRKY12                         --------->AHL20(2)--------->YAB1      --------->WRKY38(1)             <--------P--------->WOX13(1)    --------->ICU4    <------------CBF               <---------YAB1  --------->YAB1----------->GT1 <---------ARR11(3)            <----------DOF2<---------ATHB12  --------->DAG2              ------>ZmHOX2a(1) -AHL20(2)              ---------->DOF2     --------->WOX13(1) ---------->DOF2<---------MYB46(3) >AHL20(2)          <---------LBD16<---------TOE2(3) <---------YAB1--------->AHL20(2)       ---------   caagaccattgaccaaaatttttggggaaagagttttatggtagattaatcaattagcattgaccaaaagtaattagtgtttgttcaacaattcctgaga  3345800                <---------YAB1            --------->AHL20(2)             <---------YAB1           --------->ATHB12     ----------->GT1             <---------YAB1  --------->ARR11(3)           <-----------GT1  --------->GLK1(2)       --------->ANAC55(2)          <--------P          --------->ICU4  <---------ARR11(3)      <---------ANAC55(2)  <---------ICU4        ----------->GT1 --------->RVE1(1)        --------->ANAC55(1) <---------ATHB12 <---------YAB1           <----------DOF2 >LBD16   <---------YAB1  --------->ANAC46<---------AHL20(2) <-----------GT1<---------ICU4   taaaaatctgttaatattatgaattaacacataataccattgatttaaatcattttggtagatttacaatagggctaataagtatgtctactttctactt  3345900                                       --------->ATHB51                                       --------->AHL20(2)            <---------YAB1            --------->ICU4    <---------ANAC58          <---------CCA1(2)           <---------MYB52(1)<---------ANAC58  --------->AHL20(2)   <---------AHL20(2)         --------->YAB1     <---------GLK1(2)     --------->TOE2(3)  --------->AHL20(2)    --------->ARR11(3)     --------->LBD16         --------->TOE1(3)  <---------AHL20(1)   <---------CCA1(2)     <---------LBD16        --------->YAB1                <--  <---------AHL20(2)  <---------AHL20(2)   <-----------GT1 --------->REM1(2)                ------->TEIL   gtaattaatttcatatcattgtattatatctatagtagccattattttcccgatttttccttgaagacaataacattaaaacaaaaaatccatgaatcaa  3346000                                  <----------DOF2                                 <---------MYB46(3)          <-----------GT1 --------->ANAC46                                       <--------P       --- -------ARR11(3)       --------->ZAT18                                     ---------->DOF2        <--   tatgttttgtttttacaaattcaagttcacgaagtactttgcaaaatttttgttagccttctccgattgagtttcggcaaagggttgttttctgtgttag  3346100  Previous    Next  AGI:  At1g10190.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G15050.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80518.1); contains InterPro domain Protein of unknown function DUF239, plant (InterPro:IPR004314) Range:  from: 3343688    to: 3345634    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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