Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <---------------AGL15                           --------------->AGL15                          <-----------------AG                          <-----------------AGL1                          <-----------GT1                    <------------CBF                       <                      <----------DOF2                --------->AHL20(1)                            <-    <-----------TBP<-----------GT1             ----------->GT1   ----------->HVH21                <--  =========================================MADS_MADS --------->AHL20(2)                       <------  <----------DOF2 ---------->ID1  ----------->GT1    <---------AHL20(2)                       -------  --------------->AGL15   <-----------------AGL3    --------->AHL20(2)                       --------  <---------------AGL15   --------->ZAT6<----------DOF2    <---------YAB1 >>>>>>>>>TBF1      --------   ttggctttatatagagatttgtttcttttcactatatggaaactttctgtagaaaaaaattagtattgtgacagaagaagaataaatgaagttggaccca  3328600        ------------>CBF ----------DOF2 --------ICU4                          <---------ZAT18                                     --------->ARR14(2) -------ATHB12                         --------->ZAT18          ------------>CBF           <---------ARR14(2) ---MYB59                         <---------ZAT14           <---------YAB1            --------->ANAC58 ----->CBF       <---------YAB1  <----------DOF2        ----------->GT1               --------->ANAC58 ->ANAC58    --------->ARR14(2)  --------->TOE2(3)   ---------->DOF2          ---------->DOF2<------- ->ANAC58    <---------GLK1(2)<-----------GT1    --------->AtLEC2  <------------CBF ---------->DOF2   atcttttcttctcaatattctccttgtaagttttactttagtgccataaccatgtaaaaggtataattcaattggatggcaaaagctaaagcaaatattc  3328700                                                  --------->ANAC55(2)                                             <---------ICU4                                             --------->YAB1                ----------->GT1                                      --------->GLK1(2) <---------AHL20(2)--------->DAG2   <-----------RAV1(1)    <----------DOF2   <---------ATHB12           ---------->DOF2 --GLK1(2)       <---------CCA1(2)--------->YAB1  <---------ANAC55(2)----------------->AGL1  <-------   tcagtttgtggctcttcttctatctctgcttttgtatgagaatcaaatgatcacatatttgatttcaatttgccaaagagtgaaatttttgagactgtaa  3328800                                                          <---------GLK1(2)                                                --------->YAB1                                               <---------ATHB12          ------------>CBF                                               --------->ICU4           --------->YAB1                                            --------->ICU4<---------ARR11(3)                                            ------>ZmHOX2a(1)<---------AHL20(2)    <---------ANAC58                                <---------GLK1(2)      <---------HSFB2a(2)         <---------ANAC58 <                       ---------->ID1 <---------TOE1(2)>>>>>>>ZML2 <---------HSFB2a(2)  --------->ZAT18 --ZAT14           <----------DOF2   ------>ZmHOX2a(1) --------->HSFB2a(2)    <---------ICU4   ------   tgaagttttgaactagttggcctttgtcattttagattcctatgtcctaatgatgttctagattttattctcgataacaatttttgctagtgggcagaat  3328900                                                                            --------->HSFC1(2)                              --------->ANAC58                              --------->HSFB2a(1)                              --------->ANAC58                              <---------HSFB2a(1)                 <----------DOF2          <---------AHL20(2)                <---------HSFC1(2)                <---------ANAC58          --------->AHL20(2)        --------->HSFB2a(2) -----------------AG <------------CBF    --------->AHL20(2)         <---------HSFB2a(2)  ---------->DOF2 --->GLK1(2)    <---------ANAC58   ----------->GT1  <---------MYB52(1)   *TSS      <----------DOF2   atgacacatatgggaagtgcttgaattgtggcaagtatggtcatttaataagccgttgtctcatccccttgcagaagaaacttccctttaaaaaagacta  3329000                                              <---------At4g35610                                ----                                          <-----------HVH21                       --------->At4g35610                                       ------>MYB46(1)  --------->GLK1(1)         <---------At4g35610                               <-------GAMYB<-----------RAV1(2)         --------->ATHB12         <---               <---------bZIP60(2)     ------>MYB83     <---------GLK1(1)   <---------MYB46(3)   ----            <---------ATHB12<---------At4g35610   <---------ANAC46     <---------YAB1            <---    --------->LBD16         --------->At4g35610 --------->ALFIN1      <-----------HVH21 <---------At4g35610  <---------LBD16--------->ALFIN1 <-----------GT1--------->ZAT2      <---------ZAT6     --------->At4g35610   tccctccggggctaatgaagtggctctctctgctgttaaccttccttcaggtgctgggatttcagaaactagtgtcattggttcagcttcagctaatcca  3329100                                                                              <---------WRKY18(1)        <---------MYB52(1)                                                   --------->WRKY38(1)  --------->GLK1(1)                         ---------->DOF2                  ----------->HVH21  --------->ZAT2                         ---------->DOF2                     --------->WRKY12  <---------ZAT2                       <------ZmHOX2a(2)                  <---------MYB46(3)  <---------At4g35610              --------->HSFB2a(2)               --------->TOE2(1)  --------->At4g35610              <---------HSFB2a(2)               --------->TOE1(1) ----->ZAT2                    <---------SPL7                       <---------LBD16 ------ZAT2                   <---------ANAC58   --------->ZAT18  --------->ZAT2 ------->RAV1(2)              <---------ANAC58   <---------ZAT18  <---------ZAT2              <------ ------At4g35610      ---------->DOF2 <---------ARR11(3)        <---------ALFIN1    <---------MYB52(1)   cctgagctcccttggtccaaaccaaaaagaaggcgttcgagatcaaagaagcgctctctcagttctccacctcggattgttgacccgttgattcccattt  3329200                                                                                                    -                                                                                                 ----                                                                                                <----      --------->PCF2                          <---------MYB46(3)                                <----    --------->At4g35610                     <---------ANAC58                         --------->ATHB12 <---------At4g35610                --------->ANAC58                           <-----------RAV1(1)  < --------->At4g35610                --------->ANAC58                    --------->ARR14(2)      ----- --------->ZAT2                 ----------->GT1       <-----------RAV1(2)   ------>ZmHOX2a(1) ------- <---------ZAT2      --------->ANAC58       <---------ANAC58            <---------ARR14(2)  <-------- ---CCA1(2)          --------->ANAC58  --------->CCA1(2)       --------->ARR14(2)   <---------YAB1 <-   ctcagcaggtccctctattgcccaagccttcggctagtaagaaatgggttgtgagaccaggtttgaattcgccagttcctactgttgtcattggtgcaga  3329300                                                                ------>ZmHOX2a(2)                                                               <------ZmHOX2a(2)                                                              <---------ARR14(2)                                                            --------->LBD16                                                          ------>ZmHOX2a(2)                                                          <---------LBD16                                                         --------->CCA1(2)                                                         --------->ARR14(1)                                                         <------ZmHOX2a(2) -------->HSFB2a(2)                                     --------->AGP1 ----->GLK1(2)                                          --------->ARR14(2) -----ARR14(2)                                          <---------ARR14(2) -----GLK1(2)                                   --------->WOX13(1) ---------HSFB2a(2)              --------->ARR11(3)     --------->ARR11(1)            <---------ZAT2 ---->ARR14(2)                   <---------ARR11(3)     --------->ARR11(3)            --------->ZAT2 ---->ARR10       ------>ZmHOX2a(1)          --------->GLK1(2)--------->ARR14(2)   --------->LBD16<-- -ZAT18      --------->MYB46(3)  --------->GLK1(2)      <---------ARR11(3)       ----------->RAV1(2) --------LBD16------->GAMYB     --------->RVE1(1)   ---------->DOF2              <---------LBD16-----   ttctggaatttctcaacctcctactctccctaaaaaatctatgagagagtctatcaaagatccggatccaaacttccctcttcccctgggctgggcagtg  3329400                                                           <-----------HVH21                                                          ----------->HVH21                                                         --------->LBD16                                                         <-----------HVH21                                                        <---------O2                                                        ======================bZIP_DOF                                                        --------->O2                           ------                                                        <---------TGA1a                       <------                                                   --------->SPL7                            <-------                                             --------->ARR14(2)                             <--------                      <---------ARR11(3)     <---------ARR14(2)        <---------TOE1(3)    <--------                      --------->ARR11(3)  ========================MYC_MYB    <---------ANAC58<-------                  ---------->DOF2         ------->GAMYB --------->TGA1a<---------TOE2(3)<------NtERF2       <---------TOE2(3)              --------->MYB46(3)--------->ANAC46     <---------ANAC46-------- -------ANAC46    ================================================bZIP_DOF   <---------ANAC58<------- ---->ZAT14   ---------->DOF2    --------->ALFIN1<-----------HVH21 <----------DOF2      --------->ATERF1(1)   atgtctactaaggcaaaaaagaaagaacttaagaagtggcacaaccgtattcgtccccccgtgacagagcttcaaggtttcgtcgatggcagggccggtg  3329500  Previous    Next  AGI:  At1g10160.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 3.9e-39 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 3328973    to: 3333472    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version