Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------ANAC58                            <---------ANAC58                           --------------->AtSPL3                           <-------TEIL                           --------------->AtSPL8                        <------MYB46(1)                        <------MYB83                    --------->ZAT2                                                  --------->GLK1(2)       --------->ZAT6   <---------MYB46(3)                                          <---------ARR11(3) ------->YAB1       <---------ZAT2              ------->TEIL                        --------->ARR11(3) -------YAB1   <-----------GT1     <---------YAB1 <---------MYB59      <---------MYB52(1)  <---------   atgataacaacactatttttcaagcttggttcgtactattcttacatttgcacctaaattctgaaatgtttccattagttagcaaaaatctttcttttat  3263200                                                --------->AHL20(2)                                                <---------AHL20(2)                                               --------->AHL20(2)                          --------->ANAC58                                           <-------TEIL                                    --------->ANAC58                                        --------->GLK1(1)                                  --------->ANAC55(1)                                       <---------ARR14(2)                                  --------->ANAC46                      <---------ICU4   --------->ARR14(2)                           --------->AtLEC2                    <---------TOE2(3)  <---------ARR11(3)                      --------->ANAC58                   --------->YAB1      --------->ARR11(3)             <---------At4g35610  <---------ANAC55(2)              <---------YAB1      --------->ANAC58          <----------DOF2    --------->ANAC58     --------->At4g35610          --------->ANAC58        <---------HSFC1(2)-------->P     --------->ANAC55(2)     <---------At4g35610----------->TGA1<---------RVE1(1) <---------HSFB2a(1)  --------->ANAC46 -DOF2   XXXXXXXXXXXXXXXXXXXX>MIR827 ----------->ARR10    --------->HSFC1(2)--------->MYB52(1)  <----   tctacttagctaaatgaccattaacaatgacgaaacaagcagatattcatttaatttggaagctttgtattcagaggctaccagcaatgcaagacggaac  3263300                                                                                     <---------AtLEC2                                                                                <----------DOF2                                                                       <---------ARR11(3)                                                                       --------->ARR11(3)                                                                      --------->RVE1(1)                                                                      --------->CCA1(1)                                                                      <---------GLK1(1)         -----                 <---------ARR11(3)                                   <---------RVE1(1)        <-----           ----------->GT1<---------YAB1                              <---------CCA1(1)       -------    --------->YAB1      --------->YAB1               <----------DOF2  --------->GLK1(1)      -------- <----------DOF2 --------->ARR11(3)            ------->TEIL          <---------ARR11(3)      -------- -----ALFIN1 >>>>>>>>>GATA-1               --------------->AtSPL8    --------->ARR11(3)      --------   acactttcatagatagataaatcttctcataatacaagttgataacatgtaccttctttttagagacttgagatatcttcttcttttgcaagtccaagca  3263400                                                                <---------ANAC46                                                                <-------GAMYB                                                               <------MYB83                                                               --------->MYB55(2)                                                               <------MYB46(1)                                                               <---------MYB46(3)                                                               --------->MYB52(2)                 <--                                                      <---------ICU4                           ------ -->TEIL                                             <---------YAB1                          <------- ----ALFIN1                                        --------->YAB1                   <---------MYB46(3) -->MYB46(3)                           --------->ARR11(3)     <---------AtMYB61    --------->ALFIN1 ->ANAC58            --------->GLK1(2) --------->GLK1(2)     <---------MYB52(1)  <---------ANAC46 --- ->ANAC58  <------MYB83                <---------ARR11(3)   <-------GAMYB       <---------AtMYB61---- ->ANAC46  <------MYB46(1)   <---------LBD16      <------ZmHOX2a(2)             <---------TOE2(3)<---   cctctcgtcgatttggttagaagaatcgatttggggaacaaaatctagctcgatcatcatcccgttggttgaaacactcgtttaggtggatgatttttca  3263500                           <---------At4g35610                      xxxxxxxxxxxxxxxx>smallRNA(i)                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                    <---------AGP1                                                               ----                    --------->AGP1                                                              <----                    --------->ARR14(3)                                                        -------                    <---------ARR14(3)          <---------ANAC58                            >>>>>>>>CAMTA3                    --------->ARR11(3)          <---------ANAC58      >>>>>>>>>TBF1         <-------- -------ICU4        <---------ARR11(3)       --------------------->WRI1                     <-------- --->YAB1           <---------ARR14(2)       <----------DOF2       >>>>>>>>>TBF1   --------->AHL20(2) ----GT1            --------->ARR14(2)   --------->YAB1    <---------DEAR3(1)     <---------AHL20(2) ------>ATHB12     <---------CCA1(2)    <---------ATHB12 <---------SPL7           --------->AHL20(2) ----->ICU4       ----------->ARR10    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)>>>>>>>>>TBF1   <-------- ------YAB1  <---------ATHB12   <---------DEAR3(2)       --------->LBD16 >>>>>>>>>TBF1<---------AHL20(2)   tgatttcatgaacaaatcactagatcttcagcgtcgattccaatcgtctttggtgtctccgtaggcgaagaagaagaagaagaaataaataaacgcgtgt  3263600                                                --------->ANAC55(1)                                                <---------TGA1a                                                --------->ANAC55(2)                             -----                                                <---------ANAC46                               ------                                                --------->ANAC58                             <<<<<<<<                                                --------->ANAC58                             <------ZmHOX2a(2)                                                <---------ANAC55(2)                          <<<<<<<<                                                --------->O2                              --------->HSFC1(2)                                    <---------AHL20(1)                                    <---------HSFC1(2)                                    --------->AHL20(1)                                 =============HOX2a_HOX2a                                    <---------AHL20(2)                        --------------->AGL15                                    --------->AHL20(2)   --------->GLK1(2)    <---------------AGL15 ------->GT1                       <---------ATHB12  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------HSFB2a(1) -----AtMYB61                  ------------>CBF <---------O2                 ----------------->AGL3 -->ALFIN1                    --------->ANAC46  --------->TGA1a      <------NtERF2     <------ZmHOX2a(1) -ANAC46                    <-----------GT1 <-----------HVH21<------------CBF<-----------------AGL3 -ANAC58                   --------->ZAT14 <---------bZIP60(1)       --------->HSFB2a(2)  --------->HSFB2a(1) -ANAC58      *TSS  --------->WOX13(1)     --------->bZIP60(1)       <---------HSFB2a(2) <---------KAN4(2)   ggttttttttttttggttttgtcattcagtttacccaataaaatgaggtcacgtatgagtttctattgggtcgcgaaaaactaattttaggaacgatcct  3263700                                                                                       <----------DOF2                                                                                  <---------ANAC58        <---------ZAT2               <-----------GT1                              <---------ANAC58        --------->At4g35610       <---------ICU4                             <---------ANAC58 ->ZmHOX2a(1)               <---------PCF2                                   <---------ANAC58       - --->TOE2(3)           ----------->RAV1(2)                                   <---------ANAC55(2)    - <ARR1  <---------At4g35610 --------->PCF2                                <---------MYB52(1)       -- <ARR2<-----------RAV1(2)   <---------TCP20               --------->GLK1(1)  --------->ANAC55(2) <---   aaatggattcagctgtttttctattatctgggcccatttttacataaaaacccatctaagaaatctactaaaaacccttacttgacttgctctaagtttt  3263800                   <---------ANAC58                  --------------->AtSPL3           <---------WRKY38(1)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------WRKY12 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ARR14(2)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------GLK1(2) <---------DAG2      --------->ARR14(2)<----------DOF2  ------>MYB83 <---------SPL7<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ------>MYB46(1)--------->SPL7 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   - --------->MYB52(1)<---------ANAC58                                                                <- -------->MYB46(3)--------------->AtSPL8                      <----------DOF2                    ---- -------->AtMYB61------->TEIL<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <----- ------->MYB46(3)--------->MYB52(1)                   --------->ANAC58                       -------- --------GT1 <---------------AtSPL3                   --------->ANAC58     <---------ATHB12  <-------   caccaacggattgtcaacgtaccgtactttttttttttttttttttttttagtcaaacccaatactttccattccaaatcaaacaaaaacaagagtaccc  3263900                                                   --------->At4g35610                                                --------->At4g35610                                             --------->At4g35610                                            ----------->RAV1(1)   --------->ANAC58                        <------NtERF2   --------->ANAC58                       --------->LBD16                                           - -------->WRKY18(1)               --------->At4g35610                     ----------->GT1           - ----------HVH21         ---------->DOF2  --------->At4g35610            ----------->GT1            < ----->LBD16    --------------->AGL15    --------->RAP2.6(2)            <---------------------WRI1 <- ----LBD16      --------->HSFB2a(2)      --------->ANAC46         --------->MYB52(1)               -- ->ARR14(2)     <---------HSFB2a(2)      --------->DEAR3(1)   <-----------GT1               --------- --ARR14(2)  <-----------GT1      <---------At4g35610        --------->AHL20(2)    ---------->DOF2 <-   gggtcaagcccgatattaccagaaatacaaagggagagcttagccgcagcatcagcaatcgaattaactaagcgagggataaattgaaaggagatagagc  3264000 -------->GLK1(2) -------->ARR14(2) ---------ARR14(2)                       <---------ARR11(3) --------GLK1(2)                         --------->ARR11(3) ------->ARR14(2)                <----------ID1 ->DOF2                  --------->ZAT6 --------->CCA1(1) --------ARR14(2)    --------->GLK1(1)  --------->RVE1(1)           ---------->DOF2                 -   ggaatctgtttcgaatagatcgaatttccactagaaggccaaatatctcattgagggagacattggagttcaaagcatcaactatggattttgagtccga  3264100  Previous    Next  AGI:  At1g09995.1    Description:  similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G79890.1); contains domain PTHR11472:SF5 (PTHR11472:SF5); contains domain PTHR11472 (PTHR11472) Range:  from: 3262267    to: 3263614    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g10000.1    Description:  nucleic acid binding / ribonuclease H. similar to beta-galactosidase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G06845.1); similar to hypothetical protein 27.t00122 [Brassica oleracea] (GB:ABD65056.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease H; (InterPro:IPR002156) Range:  from: 3263879    to: 3264790    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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