Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->ARR14(2)                  <---------ARR14(2)               ------>ZmHOX2a(2)                                            <---------ARR14(2)              --------->CCA1(2)                                             <---------ARR11(3)              <------ZmHOX2a(2)                                             --------->ARR11(3)             --------->ARR11(1)                                            <---------CCA1(2)             --------->ARR14(2)                                        <---------ANAC46         ---------->DOF2                                               ----------->GT1        <---------AHL20(2)                                           --------->ZAT18    <-----------TBP       --------->ARR11(3)                         <---------ZAT18 ----------GT1--------->ARR14(1)      <---------ANAC58               --------->ZAT14 -ANAC55(2)  --------->ARR11(3)       <---------ANAC46         --------->CCA1(2)             -------- >ANAC55(2)  <---------ARR14(2)       <---------ANAC58        --------->ARR11(3)         ----------->GT1 -ANAC55(1)  <---------ARR11(3) <-----------RAV1(1)          <------ZmHOX2a(1)          ---------->ID1 -GT1 ----------->TBP     <---------ARR11(3)        ---------->DOF2  <---------ZAT14<----------DOF2 <   ttttctatatataaagatccgatttggagaacttatgttgccttggacgagagataaagaataggatatagtggagtatatcttgactttgtcgttaaaa  3217700       ----------------------->TaNAC69(2)       <-------GAMYB      --------->MYB111(2)      <---------MYB46(3)      --------->MYB55(2)    <-------GAMYB                                         ----------->RAV1(1)    <---------MYB52(1)                             <---------bZIP60(1)   <------MYB83                                    <---------ANAC55(2)   <------MYB46(1)                                 --------->ANAC46                             <----  --------->MYB59    ------>NtERF2   ---------->DOF2--------->TOE2(3)                      ---------- -->DOF2    <---------ZAT6       <----------DOF2   --------->ANAC55(2)              --------->HSFB2a(2) ---------MYB52(1)   ----------->RAV1(1)  <----------DOF2--------->MYB46(3)         <---------HSFB2a(2)   cagttcggttgttagtgttacgacgacatttgtgtctttcaaagctttcacttacgtcaacaacaaaaaaaactttggacattgttccaaaaaaaaagaa  3217800                                                                                        --------->ATHB12                                                                                        <---------AHL20(2)                                                                                        <---------ICU4                                                                                        --------->ATHB51                                                                                        --------->AHL20(2)                                                                                       --------->ICU4                                                                                       <---------YAB1                                                                                    <---------YAB1                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                                   --------->AHL20(2)                     <---------MYB46(3)                   --------->DAG2           <---------AHL20(1)                 <---------TOE1(3)                       ---------->DOF2           --------->AHL20(1)                 --------->MYB59                --------->At4g35610         ----------->RAV1(1)            <----------DOF2                     <---------At4g35610        --------->REM1(1)  <------ -----GLK1(1)    <---------TOE2(3)    <-----------------AGL2  ----------->GT1     --------->YAB1  --- >DOF2 --------->MYB46(3)           <-----------GT1  ---------->DOF2  <-----------GT1--------->YAB1   atcactcgaacaaactttttaggttgttcgttttatatatactgtatttgggctgaaaagaaagtggaaattttactacaacaaatataattatttgagt  3217900                                                                                               ------                                                                                            ------>NtERF2                                                                                           --------->DEAR3(1)                                                                                <---------ANAC58                                                                                <---------ANAC46                                                                           ----------------------->TaNAC69(2)                                                                       <---------At4g35610 <---------ALFIN1                                                                   ------>ZmHOX2a(1)     ------>NtERF2                                                                   <----------DOF2       <---------ATERF1(1)                                                               <---------ARR14(2)       --------->ANAC46            ------>MYB83         ---------->DOF2               <---------ARR11(3)       --------->ANAC58 ---ANAC46  ------>MYB46(1)  --------->ZAT18  <----------ID1   --------->ARR14(2)       --------->ANAC58 ------->DOF2           ---------->DOF2     ---------->DOF2   <---------CCA1(2) <---------ANAC58  <--   gaaagcccaaaaccaaatttaaggcccaaagttcacaaagctccaaaaaagacaaaacagtgccatatcctttcgctcactggcttaaacccgcctcctc  3218000               <<<<<<<<<TBF1                                                                 <-------         <<<<<<<<<TBF1                                                                      <--------      <<<<<<<<<TBF1                                                --------->AHL20(2)       <--------   <<<<<<<<<TBF1                                                   <---------AHL20(2)      ---------- >ZmHOX2a(1)<<<<<<<<<TBF1                                   --------->TOE2(3)          <----------DOF2 ----------------------ANAC81            <---------YAB1     <----------DOF2    <----------DOF2   tgttcttcttcttcttcttcttccttctctcactcgaaaatttcttattagatgtcttaaaactttagtttaatttgtctactttcgaactttggctttt  3218100                 <------------CBF                         --------->ZAT14  <---------ANAC46<---------WOX13(1)                      <---------ZAT18  <-----------RAV1(1)                                     <---------ZAT14   <---------WOX13(1) ---DOF2        --------->ATHB12                    --------->ANAC46       <---------ANAC58 -ANAC58       <-------TEIL--------->TOE2(3)        --------->ANAC58       <---------ANAC58 -ANAC58   <---------KAN4(2)                        --------->ANAC58       <---------AtLEC2 >ID1      ----------->ARR10                   --------->ZAT18           <---------YAB1        ------   agttttgtgggggaagattcattgatatacctctatggatttgatggtgtccacaagcagtgctcaagaagggttttgcttgattcaacaatttcatcgc  3218200                                  <---------SPL7                                 <---------ANAC46                                 <---------ANAC58                       --------->bZIP60(1)                       <---------ANAC58                       <---------ANAC58                       --------->O2                       <---------TGA1a                       --------->TGA1a                                          --------->DAG2                       <---------O2      <---------HSFB2a(2)                   ---------->DOF2                       <---------bZIP60(2)     <---------ZAT6              <---------ANAC55(2)         ----------->GT1         <---------ANAC58                          --------->ANAC58        <-----------------------TaNAC69(2) <---------MYB52(1)              --------->ANAC58 --->HSFB2a(2)      ----------->HVH21    --------->HSFB2a(2)           <-----------HVH21   gaatataaacgaggtaataagcttgacgtctcatgtcgtacttctggtagtattagttctaaaatccctcttgggtcacgaaaaaggaatcgacttgttc  3218300               <---------TOE2(3)               <---------TOE1(3)         <---------ANAC46                                                                           -       <---------RAP2.3(1)                                                                     ------       ------>NtERF2                                                                       <---------ARR14(2)      <---------DEAR3(1)                                                                   --------->ARR14(2)      <---------RAP2.6(2)                                                                ------->GAMYB     <---------LBD16                             ---------->DOF2     <---------LBD16   >>>>>>>>>MYB98     <---------At4g35610                    --------->At4g35610     ------>ZmHOX2a(1) --------->MYB52(1)    <-----------RAV1(1)                     <---------At4g35610  ---------->ID1    --------->YAB1   <   tggtttctgcggcttctaaggttgagagttcaggtcttaatggtagagctcaaaagttcgaaactttgtcctctgggtatagcaatagtaacggaaatgg  3218400                                                                      ----------->ARR10                                                                   <-------GAMYB                                                                  <---------MYB46(3)                                       <---------ETT(2)        <---------At4g35610                                   <---------ARR11(3)      <-----------HVH21                           <-------GAMYB         <-----------GT1  ----------->GT1  ---------->DOF2         <---------ANAC46       --------->YAB1--------->At4g35610 <---------ICU4           <---------ANAC58    --------->YAB1 <-----------RAV1(2)        <------ZmHOX2a(1) -------->ICU4            <---------ANAC58 ----------->GT1<---------ANAC46   --------->At5g28300 ----->GT1           <----------DOF2   --------->ETT(2)   <---------ANAC58  ----------->GT1 ---------YAB1<---------ARR14(2)   --------->ARR11(3)     <---------ANAC58  --------->LBD16   tcattatagctctgtgaattcgtcttttgcgttggaagatgtcgagagtaataaccatttgcgtcagatggttagaaccggtgaattggaggaagggttt  3218500                                                                                 <---------ANAC58                                                    --------->ANAC46             <---------ANAC46                                                 --------->ZAT14                 <------MYB46(1)                                                 <---------ZAT18                 <---------ANAC58                                                 <---------ZAT14                --------->MYB59                                               --------->LBD16                  <------MYB46(1)                                              <---------ANAC58                  <------MYB83                                              <---------ANAC58                <--------P                                              <---------ANAC55(2)           <---------MYB46(3)                                              <---------ANAC46              <------MYB83                                        <---------YAB1               --------->GLK1(2)          <----                                      <---------bZIP60(1)           --------->ARR14(2)          -----              ----------->GT1         --------->GLK1(1)         <---------LBD16 <---------MYB46(3)    --------->HSFC1(1)             --------->LBD16  --------->ANAC58<---------ARR14(2)      =========    <---------HSFC1(1)<---------LBD16 --------->bZIP60(1)  --------->ATHB12 <------MYB46(1) <------ZmHOX2a(1)    --------->HSFB2a(2)            ------>ZmHOX2a(1)--------->ANAC58<---------GLK1(2)       =========    <---------HSFB2a(2)  --------->At5g28300  <---------ANAC55(1) --------->LBD16<------MYB83--------   aagtttctagagaacatggtttatcacggtaatgttcctgatatcattccgtgcacgacattgattcgcggattctgtaggttgggtaagacgaggaaag  3218600  Previous    Next  AGI:  At1g09900.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G04760.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61988.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 3218135    to: 3219931    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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