Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ZAT18          <---------ICU4          -------->HAHB4         --------->ICU4       --------->YAB1       <---------ICU4      <---------AHL20(2)      --------->AHL20(2)      <---------ATHB51      --------->ICU4  --------->AHL20(2)                  <---------GLK1(2)                                        ------ ------->DOF2<---------ZAT18     --------->ATHB12                                    ----------->GT1 ---->HSFB2a(2)                <----------DOF2        <----------DOF2 --------->GLK1(2)<---------YAB1 -----HSFB2a(2)         <----------DOF2------->TEIL --------->At4g35610         ---------->DOF2------   aaaagaaaataattatgcactagtttctttgagctttattgaatctctcttggctgctatatgtaagttcaaattctatctgaaaagatgtgattaatct  3217100                                                       ===========================HOX2a_HOX2a                                               --------->ZAT2                                               --------->At4g35610                                               <---------ZAT2                                               <---------At4g35610                                              ------>NtERF2                                             <-----------RAV1(2)                                            --------->ATERF1(1)                                            <------NtERF2--------->ARR14(2)                                           ------>NtERF2 <---------ARR14(2)                                           <---------RAP2.6(3)             ------>ZmHOX2a(2)                                           <-----------HVH21              <------ZmHOX2a(2)                                           <---------ATERF1(1)           --------->ARR14(2)                                          --------->ATERF1(2)            <---------ARR11(3)                                          --------->ANAC46 ------>ZmHOX2a(2)           <---------At4g35610            --------->RAP2.3(3)            <---------ARR14(2)           --------->At4g35610            --------->RAP2.3(2)            --------->ARR11(3)          <---------TOE1(3)               --------->RAP2.6(2)   --------->LBD16     <---------ANAC46                     --------->DEAR3(1) ------>ZmHOX2a(1)    ----------->RAV1(2)     <---------ANAC58                     <---------ATERF1(2)=====================HOX2a_HOX2a     <---------ANAC58                    --------->ERF1==========================HOX2a_HOX2a    ---------->ID1                       --------->RAP2.3(1) ====================HOX2a_HOX2a --->YAB1 <---------TOE2(3)          ---------->DOF2   ------>ZmHOX2a(1)<---------GLK1(1) --->TOE2(3)                     --------->ANAC46<---------MYB46(3)     --------->GLK1(1)   tattttggcgttaagcttacatagaagagacttacacatcaaagccgccagctgttcctgatcctccccaaacgagatcccaatacctgaagatgaaaca  3217200                                ======================HOX2a_HOX2a                  <---------------AGL15                                <------ZmHOX2a(1)       <---------AHL20(2)         --------------->AGL15                              <---------TOE2(3)         --------->AHL20(2)  --------->WRKY38(1)                            --------->TOE1(2)       --------->AHL20(2)    <-------GAMYB  --------->YAB1                      --------->TOE2(3)        <------ZmHOX2a(2)          <---------At4g35610                      <---------MYB59         --------->ARR11(3)          --------->At4g35610      --                      --------->TOE1(3)       <---------ARR11(3)         <-----------RAV1(1) ------->TEIL                   <-----------GT1           --------->YAB1        XXXXXXXXXXXXXXXXXXXXX>MIR4221   --   gagacaatgcataatccaatttaacctaaacttaggaaaaaaaacaaggatcatatatataaatcccattaccctctgttgacttcttcattaagaacct  3217300                               --------->LBD16                               ----------->GT1                             <---------LBD16                                              --------->At4g35610             ------>NtERF2 <---------ARR14(2)                                     --------->ANAC46   --------->ANAC58        --------->ARR14(2)                       --------->ZAT14       -----------   --------->ANAC58 <---------YAB1                                  <---------ZAT14     <---------ALFIN1 ------->ANAC58     <-----------GT1                               --------->LBD16 --------->WOX13(1) ------->ANAC58   --------->YAB1<---------MYB52(1)           <-----------GT1 --------->ICU4   cgagcaagttatcgatgccattatactcgattccggtaacaattccatcaggcttagataatgtaacccgtgcaatgccattatccatcaccacctgaaa  3217400                                                                                                    -                                                                                     ----------->GT1<                                                                                    <---------TOE1(3)                                                           ------->TEIL             <---------TOE2(3)                                                  <---------------------WRI1       ---------->DOF2 <-                                               --------->ZAT2                  ----------->GT1     --            --------->ANAC46                   --------->At4g35610      <---------YAB1          -----            --------->ANAC58                   <---------At4g35610   <------ZmHOX2a(2)          -----        --------->ANAC46                   --------->ARR14(2)       <---------ARR11(3)          ----- <---------ARR11(3)                        <---------ARR14(2)       --------->ARR11(3)         ------ >RAV1(2)   --------->ANAC58         <----------DOF2    <---------MYB52(2)     <---------ZAT6--------   caatatccatacaccagcaatttagtaagtttcaatcttctttagtatctgctgagaaacgaacatagaagatcatgagaagagttaaagtaaaaaccaa  3217500  <---------WOX13(1) -------->ATHB12 ---------ICU4                                                                              <-------- --------YAB1       ------->GAMYB --------->ANAC58                                          --------- ------->ICU4     --------->At4g35610                             <---------AtMYB61         <-------- --->P            <---------At4g35610   *TSS               <---------ANAC46               <---------- ->MYB83      --------->ANAC58    --------->ANAC46     <---------ANAC58            --------->AHL20(2) ->MYB46(1)   --------->ANAC58    --------->ANAC58     <---------ANAC46        ---------->DOF2 ----->RAV1(1)--------->AtLEC2 --------->TOE1(2)       <---------ANAC58    --------->At4g35610 ->MYB46(3)<---------YAB1      --------->TOE2(2)     --------->ARR11(3)    <---------At4g35610     <-   catgattgcccttatcatgcaactgcaacttaacatacgacattttgggaaaaaatgtcttgtgggttttggtcttaagctcaaagtaaatgttacatgt  3217600                  --------->ARR14(2)                  <---------ARR14(2)               ------>ZmHOX2a(2)                                            <---------ARR11(3)              <------ZmHOX2a(2)                                             <---------ARR14(2)              --------->ARR14(1)                                            --------->ARR11(3)             <---------ARR14(2)                                            <---------CCA1(2)             --------->ARR14(2)                                        <---------ANAC46         ---------->DOF2                                               ----------->GT1        <---------AHL20(2)                                           <---------ZAT14    <-----------TBP       <---------ARR11(3)                         <---------ZAT18 -ANAC55(1)  <---------ARR11(3)       <---------ANAC58               --------->ZAT14 >ANAC55(2)  --------->ARR11(3)       <---------ANAC58         --------->CCA1(2)             -------- -ANAC55(2)  --------->ARR11(1)       <---------ANAC46        --------->ARR11(3)         ----------->GT1 -GT1 ----------->TBP     --------->ARR11(3)                 <------ZmHOX2a(1)          ---------->ID1 ----------GT1--------->CCA1(2) <-----------RAV1(1) ---------->DOF2  --------->ZAT18<----------DOF2 <   ttttctatatataaagatccgatttggagaacttatgttgccttggacgagagataaagaataggatatagtggagtatatcttgactttgtcgttaaaa  3217700       <-------GAMYB       ----------------------->TaNAC69(2)      <---------MYB46(3)      --------->MYB111(2)      --------->MYB55(2)    <-------GAMYB                                         ----------->RAV1(1)    <---------MYB52(1)                             --------->ANAC46   <------MYB46(1)                                 <---------bZIP60(1)   <------MYB83                                    <---------ANAC55(2)                          <----  --------->MYB59    ------>NtERF2   ---------->DOF2--------->TOE2(3)                      ---------- -->DOF2    <---------ZAT6       <----------DOF2   --------->ANAC55(2)              --------->HSFB2a(2) ---------MYB52(1)   ----------->RAV1(1)  <----------DOF2--------->MYB46(3)         <---------HSFB2a(2)   cagttcggttgttagtgttacgacgacatttgtgtctttcaaagctttcacttacgtcaacaacaaaaaaaactttggacattgttccaaaaaaaaagaa  3217800                                                                                        --------->AHL20(2)                                                                                        --------->ATHB12                                                                                        <---------AHL20(2)                                                                                        --------->ATHB51                                                                                        <---------ICU4                                                                                       <---------YAB1                                                                                       --------->ICU4                                                                                    <---------AHL20(2)                                                                                    --------->AHL20(2)                                                                                    <---------YAB1                                                                                   --------->AHL20(2)                     <---------MYB46(3)                   --------->DAG2           --------->AHL20(1)                 <---------TOE2(3)                       ---------->DOF2           <---------AHL20(1)                 <---------TOE1(3)              --------->At4g35610         ----------->RAV1(1)            <----------DOF2                     <---------At4g35610        --------->REM1(1)  <------ -----GLK1(1)    --------->MYB59      <-----------------AGL2  ----------->GT1     --------->YAB1  --- >DOF2 --------->MYB46(3)           <-----------GT1  ---------->DOF2  <-----------GT1--------->YAB1   atcactcgaacaaactttttaggttgttcgttttatatatactgtatttgggctgaaaagaaagtggaaattttactacaacaaatataattatttgagt  3217900                                                                                               ------                                                                                            ------>NtERF2                                                                                           --------->DEAR3(1)                                                                                <---------ANAC58                                                                                <---------ANAC46                                                                           ----------------------->TaNAC69(2)                                                                       <---------At4g35610 <---------ALFIN1                                                                   ------>ZmHOX2a(1)     <---------ATERF1(1)                                                                   <----------DOF2       ------>NtERF2                                                               --------->ARR14(2)       --------->ANAC58            ------>MYB46(1)      ---------->DOF2               <---------ARR11(3)       --------->ANAC58 ---ANAC46  ------>MYB83     --------->ZAT18  <----------ID1   <---------ARR14(2)       --------->ANAC46 ------->DOF2           ---------->DOF2     ---------->DOF2   <---------CCA1(2) <---------ANAC58  <--   gaaagcccaaaaccaaatttaaggcccaaagttcacaaagctccaaaaaagacaaaacagtgccatatcctttcgctcactggcttaaacccgcctcctc  3218000  Previous    Next  AGI:  At1g09890.1    Description:  lyase. similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09910.1); similar to Os08g0554100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062464.1); similar to putative MYST1 [Oryza sativa (japonica cultivar-group)] (GB:BAD10227.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61576.1); contains InterPro domain Carbohydrate-binding-like fold; (InterPro:IPR013784); contains InterPro domain Glycoside hydrolase-type carbohydrate-binding; (InterPro:IPR011013); contains InterPro domain Galactose-binding like (InterPro:IPR008979); contains InterPro domain Rhamnogalacturonate lyase (InterPro:IPR010325) Range:  from: 3215093    to: 3217540    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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