Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <---------ANAC46                                                                                           <---------ANAC58                                                                                           <---------ANAC58                   <---------ARR11(3)                                                 <-----------RAV1(1)         --------->LBD16               <---------DOF5.7(2)        <---------ANAC46  <----------DOF2 -    --------->MYB46(3)            ------>ZmHOX2a(1)   <-----------GT1     <---------ICU4---------->ID1   actggaacagccgtagttgaagatgtattccatgtccttgtaaacgatagctctattttctcatcgttctgtgtaatcacttccatctttgttgcttcaa  3211300                                                                                 --------->MYB52(1)                                                 ----------->GT1               --------->ARR14(2)                                               <---------WOX13(1)              <---------ARR14(2)                            <-----------------AGL1                        -------->P              --------->ANAC46               <---------AHL20(2)          ------->GAMYB             <-              --------->ANAC58     --------->MYB59       XXXXXXXXXXXXXXXXXXXX>MIR849             <---              --------->ANAC58     <---------TOE2(3)  <-----------GT1   <---------MYB55(2)  <--------   ================================bZIP_DOF  --------->ATHB12           --------->MYB46(3) <---------ANAC58   ---------->DOF2       --------->TGA1a    --------->AHL20(2)          <---------MYB111(2)<---------ZAT6 ----->ZmHOX2a(1)        --------->ANAC46   <---------AHL20(2)     --------->ANAC46        <---------ANAC58   tcctgtaaagtaatccaagtaagtctcacttcacatttaggtcatattaattggtataactaaacatagacacaacaaccatataccggtctagtgtgcc  3211400                                 --------->ANAC46                                 --------->ZAT6                               <---------ALFIN1                     --------->LBD16                    <-----------RAV1(2)             <----------DOF2<---------ARR14(2)                   --------->WOX13(1)         <-----------GT1    --------->ARR14(2)                 <------ZmHOX2a(2)    <----------DOF2 <---------LBD16         --------->ANAC46  --------->AGP1 --------AtMYB61   <---------LBD16    --------->ANAC46       --------->At4g35610                ----- -------DOF2<---------DAG2<---------HSFB2a(1)           --------->GLK1(1)                       <---- -ZAT18 <-----------GT1   --------->HSFB2a(1)           <---------GLK1(1)                   ---------   tttggtctttttagcctttttcccagggaagttccacactacgtcccagtaactacagaaatcagatcaattagagacttaagagtttaaacactcagaa  3211500               ---------->DOF2                                                                      -          --------->CCA1(2)                             --------->ZAT14                           <--     <---------MYB52(1)                                 <---------ZAT14                         <----     <<<<<<<<<MYB1                                   <------MYB46(1)                         --------     <<<<<<<<<MYB2  --------->CCA1(2)                <------MYB83                      <-----------GT1 <---------ZAT14   <---------ARR11(3)               <---------AtMYB61                 --------->ZAT14 --------->ZAT14   --------->ARR11(3)            <-----------RAV1(1)                  <---------ZAT14 ---->ZAT14 <---------ANAC55(2)-------->P  <---------GLK1(2)                         --------->YAB1 - -----ZAT14<-------TEIL       <-----------GT1  <----------DOF2                      <---------YAB1--- >YAB1 --------->MYB59 <-------TEIL     --------->YAB1 <---------REM1(1)    --------->ETT(2) <-------   cagagcagttagatacataaagatatacatacttaccctctatcatattctttgttggtgtagtaggcgagcacattgtcgataccattatactggattc  3211600                                                                        <---------ICU4              =   <---------bZIP60(1)                                                 <---------YAB1               <   --------->bZIP60(1)                                               --------->YAB1                 -   --------->ANAC58                                                  <---------ICU4                 <   --------->ANAC58         <---------AHL20(2)                      <---------YAB1                  - ---------->HVH21        ----------->GT1                          --------->YAB1                    - -------At4g35610       --------->DAG2                            <---------ICU4                    - -----LBD16            ---------->DOF2 --------->ARR11(3)        <---------ATHB12                   < ->ARR14(2)     --------->ARR14(2)     <---------ARR11(3)   ------>MYB83--------->YAB1            --- ---------->TGA1<---------ARR14(2)     --------->GLK1(2)    ------>MYB46(1)                       <-- ------>LBD16  <------ZmHOX2a(1)--------->YAB1            <---------MYB111(1)                     <-- --ARR14(2) <-----------RAV1(2) ----------->GT1           --------->AtMYB61                 ---------   cggtgacgaaaccctcaggatttgataaagttaattgtaaaaatctattctccattaccacctacaaatcatcatcatcacttagggtttcttaaacaat  3211700     <---------ANAC46     <---------ANAC58     <---------ANAC58  ----------->HVH21 <-------MYC3 ------->MYC3                 --------->YAB1 ============================bZIP_DOF ---------O2                  <---------ICU4 -------->O2                 <---------ATHB51 ---------ANAC55(2)          --------->ICU4 -------->TGA1a        --------->RAP2.6(2) -------->ANAC55(2)    ----------->RAV1(1)                                                     ------ -------->ANAC46      <----------ID1                                               --------->ANAC58 - ---------TGA1a     --------->ANAC58              <---------AHL20(2)               --------->ANAC58<- ---------->DYT1    --------->ANAC58      ----------->GT1                        ---------->DOF2 ---- -----------DYT1  ---------->DOF2        <------------MYB.PH3(1)               --------->YAB1  ------ ---------GT1   --------->ANAC58       --------->MYB52(1)                    <---------TOE2(3)<------ --->CBF        --------->ANAC58<---------YAB1<---------AHL20(2)        <---------MYB46(3)  <--------   tcacgtgacttgcatatcaagaaagccacaaattatgagcgtaacggtttaatttatgaaataggtctctctagttgttaatgaaaagctatttaagaat  3211800    ----------->GT1 --->ARR11(3)                                       <---------At4g35610 -------->ATHB12                        ------>ZmHOX2a(2) --------YAB1                         --------->ARR11(3)                                <------MYB46(1) ----->YAB1                           <---------ARR11(3)                                <------MYB83 --->GLK1(2)                  <-------TEIL          --------->At4g35610                --------->MYB59 ---GLK1(2)                   ------->TEIL         ------->TEIL                   <------ZmHOX2a(1) -TOE2(3)                  <---------ANAC46     <---------REM1(1)              <-----------RAV1(2)   cttgattagtaaaaatatgtatagagacgacgtacatatcgatcttggtaatgtagctgcaagacttgtgttgattctggctcaggagtttggttttggc  3211900                                                                                                <----                                                                                            <--------                                   ------------>CBF                                        ------>MYB83                                  --------->ANAC46                                       --------->MYB46(3)                                  --------->ANAC58                                       <---------MYB46(2)                                  --------->ANAC58                                    <-----------GT1                                ---------->DOF2                <---------ANAC55(2)  <-----------HVH21                              <---------YAB1       <----------DOF2          --------->GLK1(2)  ------  ------------>CBF      ------->TEIL             ------>ZmHOX2a(1)       <---------MYB52(1)------>MYB46(1)   agaatgcaatttcaaacacagacatgaacatgatcaaagcaataacccatcctctttgtttcaataagtgtctccgataatctatttgtcaccaaacatg  3212000                                                       <-------GAMYB                                                      <------MYB46(1)                                                      <------MYB83                                <------MYB46(1)       ----------->GT1                                <------MYB83 --------->YAB1                               --------->MYB46(2)     <---------MYB46(3)                               --------->MYB111(1)  <--------P      --------->TOE1(2)        --------->MYB59    <-----------RAV1(1)    <---------AHL20(2)         - ---TEIL              <<<<<<<<<MYB98       --------->ANAC55(2)           --------->AHL20(2)    <----- -ATHB12 --------->ANAC46 <------ZmHOX2a(1)<---------ANAC55(2)          --------->AHL20(2)   -------- --->AtLEC2      <---------MYB52(1)<-------TEIL --------->YAB1   <-----------GT1            ---------   catacacacatacgatatcgttttgttaggagttaggttcttatcacttatcatgttggttaaattttttcaaatttaaaaaaacaatattgtaatgatg  3212100                        <-----------TGA1                        <-----------HVH21                       <---------bZIP60(1)                      ---------->ID1                <---------DAG2              ------->TEIL                                                                <----------DOF2             <---------CCA1(2)                                                           <---------ANAC58           --------->ANAC55(2)                                                    <---------ANAC58           <---------ANAC55(2)                                                    <---------ANAC58 --           <---------ANAC58                                                  --------->GLK1(1)    <--           <---------ANAC58                                             <---------At4g35610   ------- -------->KAN4(2)<----------DOF2                                        <---------LBD16  <---------ANAC58 ----YAB1 --------------->AtSPL3         ------->MYC3                   --------->At4g35610   ------- ->YAB1   --------------->AtSPL8         <-------MYC3        --------->ICU4 <---------ARR14(2)<------ >ICU4----------->HVH21--------->bZIP60(1)                 --------->YAB1   --------->ARR14(2)<------   tttattctctgatgcgtaccttttgtcgtcacgagcttgaacacatgtgaagagaagagaaacatgatgaaatcagcggatttgtcttggggctttctcg  3212200  Previous    Next  AGI:  At1g09880.1    Description:  lyase. similar to lyase [Arabidopsis thaliana] (TAIR:AT2G22620.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT4G38030.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09910.1); similar to putative MYST1 [Oryza sativa (japonica cultivar-group)] (GB:BAD10227.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61576.1); similar to hypothetical protein OsJ_027094 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43611.1); contains InterPro domain Carbohydrate-binding-like fold; (InterPro:IPR013784); contains InterPro domain Galactose-binding like (InterPro:IPR008979); contains InterPro domain Rhamnogalacturonate lyase (InterPro Range:  from: 3208830    to: 3211655    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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