Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------ARR14(2)                                                  --------->ARR14(2)                                                 <------ZmHOX2a(1)                                       ------->GAMYB                                      --------->MYB46(3)                                    --------->MYB52(1)                         <---------GLK1(2) ---------->DOF2      ----------->GT1          --------->ANAC46              ------->GAMYB       <---------MYB52(2) --------->ANAC58                    --------->ANAC58              --------->RAP2.6(2)--------->At4g35610 --------->ANAC58          --------->TOE2(3)            >>>>>>>>>>AtWER      <---------At4g35610 ----------->GT1 ---------->DOF2     --------->ANAC58   agaacatacaatacaaccgcatcaacaaattcttcagctaacagacaaagaggaaacgaaaatcgatagaaaaaagaaatacctcagtagcacccaagtt  3161400                                                                          ----------->GT1                                                                          <---------ZAT6                        ----------->RAV1(1)                              <---------TOE1(3)                     --------->ANAC46                                    <---------TOE2(3)                   ----------->RAV1(2)                             <---------ANAC58                   =================RAV                            <---------ANAC58                   --------->At4g35610                             <---------ANAC46                   <---------ANAC58                               <-------TEIL                   <---------ANAC58                             <-------PIF5                   <---------ANAC46                          <-----------RAV1(2)                 <-----------GT1              --------->MYB52(1)------->PIF5          --------->GLK1(2)                  --------->TOE1(2) --------->ZAT2         <---------GLK1(2)                  <---------MYB52(2) --------->At4g35610        <------ZmHOX2a(1)            --------->LBD16 <-----------GT1<----------DOF2   ttcgattacaggaatcttgttacctgcaacaaattaacccagaaaaacgaacgattaaccagagcaggtgcgtttagggttacaaaaccctagaaaatgt  3161500                            <------ZmHOX2a(2)                                            <---------MYB52(1)                           <---------ARR11(3)                                          --------->TGA1a                           --------->AGP1                                              <---------TGA1a                           <---------ARR14(2)                                          <---------ANAC58                           --------->ARR14(2)                               <---------ARR11(3)                           --------->ARR11(3)                               --------->AGP1                          --------->GLK1(1)                              --------->HSFB2a(2)<--------                      --------->TOE1(1)                                  <---------HSFB2a(2)---------                <---------ZAT18                                     <----------DOF2    <---------ANAC58                --------->ZAT18                                     =============================bZIP_DOF               --------->ALFIN1                                  <------ZmHOX2a(1)     ==============              <---------------AtSPL8                             ===================HOX2a_HOX2a              --------------->AtSPL8                         --------->ALFIN1<------ZmHOX2a(2)  -----   ---------->DOF2------->TEIL            --------------------->WRI1<---------DAG2   --------->At4g35610   aatgggaaagagaagaagtgtacctcgtagatccaattctcgctccttgatagcattgaagaagtgaggacttttccagatcaaatcagccgtgagcttc  3161600                                                                                                    <    <---------YAB1                                        <------ZmHOX2a(1)                         -  <---------ICU4                           <---------At4g35610                                  ----- <---------YAB1           <---------ANAC46 --------->At4g35610                                  ----- --------->ICU4    <---------At5g28300  <---------At4g35610---------->DOF2           ----------->HVH21 -At4g35610       <-----------GT1    <-----------HVH21 --------->At4g35610         <---------At4g35610 >At4g35610 <---------TOE2(3)   <---------ZAT2 --------->ANAC58       ----------->RAV1(1)       ----- ==========================bZIP_DOF <-----------RAV1(1)<---------At4g35610  <---------MYB46(3)*TSS -- ---->REM1(1)   <----------DOF2 --------->ZAT2 --------->ANAC58      --------->MYB46(3)     ---------   accattattctactagggttttactgcttcgtcgagctctgtcgctgctaagcattcagaggaaagagacaacaacagtggctagagatgacataaaaac  3161700                                   <---------AHL20(2)                                          ------                               --------->AHL20(2)               <---------MYB52(1)           <-------                        <-----------GT1                        <-----------HVH21           --------->YAB1 ---------At4g35610    --------->AHL20(2)                      <-------GAMYB           <---------RVE1(1) -------->At4g35610    <---------AHL20(2)                     <------MYB46(1)         <---------MYB52(1) ---->ANAC58        --------->AHL20(2)       <------------CBF <------MYB83      ------->TEIL<-------- ---->ANAC46        <---------AHL20(2) --------->ANAC46       <---------DEAR3(2)--------->ARR14(2) ---->ANAC58       --------->AHL20(2)<-----------GT1          <---------MYB46(3)<---------ARR14(2) --------->RAV1(1) <---------AHL20(2)--------->MYB52(1)  <-----------RAV1(2)   <---------CCA1(2) ->DOF2    <----------DOF2   <---------ANAC55(2)  <------------CBF--------->MYB59   --------->LBD16   gcagcaaaatgacctttgctattaatttatcacttaaataaacggcccattgaattggcccagtcggttaggcccataagtgtatcccgatatttatgat  3161800                                                                              ------->GAMYB                                                                              --------->TOE1(3)                                                                              --------->TOE2(3)                                                                            -------->P                                                                     --------->MYB55(2)                                                                     <---------MYB46(3)                                                                     <------MYB46(1)                                           *TSS                      --------->MYB52(2)           ----------->GT1                 <---------DOF5.7(2)       <------MYB83           <----------ID1          <------ZmHOX2a(1)                 <---------DEAR3(2)      <---------AHL20(2)          <----------ID1       <----------DOF2      ------>MYB46(1)      --------->AHL20(2)       ---------->DOF2      ------->TEIL    <---------TOE1(2) --->ARR11(3)          --------->AHL20(2) <---------ZAT18           <---------TOE2(2)   ----------->GT1 --YAB1  ---------->DOF2  ---------->DOF2 --------->ZAT18    <<<<<<<<<TBF1  ------>MYB83<---------ZAT6 ---------AG ------------------------>ANAC81  --------->ATHB12     <---------MYB52(1)  <---------TOE1(3)   tttggaaattaaaaagaaaaaacaaataaaaagaaaaggactagtgaacgattgaatcttttcttcttcgttggttccaaccctaatctagggttactct  3161900                                                                                =====================                                                                                <------ZmHOX2a(2)                                                                             <------MYB83                                                                             <------MYB46(1)                                                                         <---------MYB46(3)                                                                        <---------RAP2.6(2)                                                                       <---------ZAT18                                                                       <---------------------WRI1                                                                       --------->ZAT18                                                                       <---------ZAT14                                                                      --------->ALFIN1                                       <-------PIF5                 <---------ANAC58                                --------->GLK1(1)       --------->ARR11(3) <--------P                  --------------------->WRI1   --------->At4g35610  <---------ANAC58         --------------------->WRI1    ------->PIF5     <---------ARR11(3)<-------GAMYB   ctctctcgcttccttctgttcttcgttcttaccgagttccacgagcattagcttcagagaccttgaattggagtgcggttggatcaaaaacagttgagcg  3162000                                                              <---------ANAC46                                                             <------NtERF2                     <------MYB46(1)                        ------>NtERF2                         ---                     <------MYB83                           <---------RAP2.6(3)                  <---                    <---------AtMYB61                      --------->RAP2.3(3)                   ----                    <---------DEAR3(1)                     --------->RAP2.3(2)                   <---                <---------TOE2(3)                          --------->RAP2.6(2)                  <----               --------->MYB52(1)                          --------->DEAR3(1)                   -----           --------->ATHB12                           ---------->DOF2                           <----          <---------YAB1                         --------->GLK1(2)                              -----          --------->ICU4                        <---------GLK1(2)                               <----     <------ZmHOX2a(1)                --------->DEAR3(1)  --------->RAP2.3(1)      --------->MYB46(3) ===========HOX2a_HOX2a--------->ALFIN1       ----------->ARR10            ----------->GT1     <-----   aagatgaggattatgattaagggaggtgtttggaagaacaccgaagatgagattctcaaagccgccgtgatgaagtatggtaagaaccaatgggctcgga  3162100  <---------CCA1(2) --->ZmHOX2a(2)                                                                    <---------ANAC46 ---ZmHOX2a(2)                                                                     <---------ANAC58 ----->GLK1(1)                                                                     <---------ANAC58 ------GLK1(1)                                                              ----------->GT1 -------ARR10                           --------->ZAT18                    --------->DAG2 ---->ARR11(3)                     ---------->DOF2                        --------->DAG2 -----ARR14(2)                  <---------ZAT6                           ---------->DOF2 ---->ARR14(2)                ----------->GT1        --------->ALFIN1 --------->YAB1 -----AGP1             <---------At4g35610    <---------SPL7       --------->WOX13(1) ----CCA1(2)           --------->At4g35610  <---------TOE1(2)<------ZmHOX2a(2)<--------P   tctcgtctcttctcgttcgtaagtctgctaaacagtgtaaagctcgctggtacgagtggctcgatccatctatcaaaaaggtaagtcgtgttcgcgtttt  3162200                                                                               ------------>MYB.PH3(2)                                     ------>ZmHOX2a(2)                    --------->MYB59 -----------                                   <---------ARR14(2)                 <----------DOF2   <---------ANAC58                                   <---------AGP1             --------->ARR14(2)        <---------ANAC58                                   --------->ARR14(2)         <---------ARR14(2)    <---------MYB52(1)                                   ------->TEIL  <---------AHL20(2)---------->ID1 <---------MYB46(3)               <---------ZAT6      --------->ARR11(3)     <---------LBD16 <---------TOE2(3)  <-------   ccttctcttaactagtagtgttcgaaaaaaaactatggatctggcgaacatttttttgtttggggatttggccttttaggtagtttgttagcttgttact  3162300  Previous    Next  AGI:  At1g09760.1    Description:  U2A' (U2 small nuclear ribonucleoprotein A); protein binding. Identical to U2 small nuclear ribonucleoprotein A' [Arabidopsis Thaliana] (GB:P43333;GB:O04497); similar to unknown [Solanum tuberosum] (GB:ABA81870.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain U2A' (InterPro:IPR003603) Range:  from: 3159127    to: 3161694    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g09770.1    Description:  ATCDC5 (ARABIDOPSIS THALIANA HOMOLOG OF CDC5); DNA binding / transcription factor. similar to MYB3R-5 (myb domain protein 3R-5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G02320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65067.1); similar to CDC5-like protein [Solanum lycopersicum] (GB:ABU49591.1); similar to CDC5 protein [Zea mays] (GB:NP_001105086.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like ( Range:  from: 3161843    to: 3165362    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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