Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->ANAC58                                                                                        --------->ANAC58                                                                                        --------->ANAC46                                                                                      <---------ALFIN1                                                                                     <---------ZAT18                                                                                     <---------ZAT14                                                                                     --------->ZAT14                                                                                    <---------ALFIN1                                     --------->ANAC58                               --------->AtMYB61                                     --------->ANAC46                              --------->ANAC46                                     --------->ANAC58     ----------->HVH21      --------->ANAC58         <---------ICU4             <-------MYC3      --------->ARR11(3)         --------->ANAC46         --------->YAB1       --------->ANAC46        <---------ARR11(3)         --------->ANAC58         <-----------GT1   <---------ZAT14        ---------->DOF2  <-----------GT1 --------->ANAC58        <---------ATHB12   --------->ZAT14<---------KAN4(1)  -------->ZAP1  --------->REM1(1)     <---------AHL20(2)  --------->ANAC46 --------->KAN4(1)<---------WRKY18(1)--------->ZAT14 <------ ------->ID1         <-----------GT1------->MYC3<----------DOF2 --------->ARR14(2) --------->ANAC58   gttttttttaatcactatccaaatcacacttcacttcacatgcaatattcctttaagctcttgaccgattcactggctacttcacaccacactccatgtc  3157100 ====================================MYC_MYB --------->TGA1a <---------TGA1a                  --------->At4g35610 --------->O2                     <---------At4g35610 --------->ARR11(3)               --------->TOE2(3) <---------O2                 --------->TOE2(3)       <---------ARR11(3)         <-----------GT1 -----HVH21                 -------->P  <------ZmHOX2a(1) <-----------GT1  --------->YAB1 <---------AHL20(2)   ccctcgtgacttctctcaactctcaaaacttacctcagcataggaaatgtattcaagattttactatcccccctcaatcgaaataacaacatttattcaa  3157200                              ----------->GT1                            <------MYB83                            <------MYB46(1)                            --------->ANAC55(2)                       <-----------HVH21                            <---------ANAC46                         --------->ANAC46                            <---------ANAC55(2)                      --------->ANAC58                            <---------ANAC55(1)                <---------ZAT18                           --------->MYB111(1)                 --------->ZAT18                  -----                   --------->ANAC58                     --------->ARR14(2)                    <------                   --------->ANAC58                 <---------At4g35610                       -------                --------->At4g35610                 <---------LBD16  --------->ANAC58         <------               --------->ANAC46----------->GT1      --------->At4g35610                       -------        --------->YAB1     --------->MYB59--------->YAB1<---------ARR14(2) XXXXXXXXXXXXXXXXXXXX>MIR824   aacaaaacaaaaattatcagcaagctaattaggtgttaaaactataatgaaatcagcggatatagtgaaccaagtcagaccatttttgagaaaattacga  3157300       <---------YAB1      --------->AHL20(1)      --------->AHL20(2)    <---------AHL20(1)        ------->MYC2    --------->AHL20(1)        ------->MYC3                             --------->LBD16 >>>>>>>>>>GT-3b              <-------MYC3                            --------->ANAC55(2) ----->DOF2                   --------->TOE1(2)                       --------->ANAC46 ---YAB1                      <-------MYC2            ----------->GT1<---------LBD16                - -->ANAC58        <-----------GT1              <---------ETT(2)     --------->MYB52(1)       -------- ---ANAC55(2)    <---------AHL20(2)          --------->REM1(2) --------->DAG2                <------- -->ANAC58<-----------GT1  <---------ALFIN1 --------->ALFIN1  ---------->DOF2      <---------YAB1   <   aagaaaaatattataccattttatctcacacacatgcgaagaagatgtgtagacaatagaaaaaaaaagtttacggagtagtagtactattgccagatag  3157400                    ----------->TBP                    <---------YAB1                                                --------->TGA1a         ------>ZmHOX2a(2)                                                        --------->REM1(1)        --------->PCF2                                                            --------->O2        <------ZmHOX2a(2)                                                         --------->bZIP60(2)       <-----------ARR10                                                          --------->ANAC46       --------->ARR14(2)   --------->ARR14(2)                                  ----------->RAV1(1)       <---------ARR14(2)   <---------ARR14(2)                            ==================bZIP_DOF  --------->SPL7  --------->AHL20(2)                                      ---------->DOF2 ---------->HVH21 --------->YAB1                                         <---------AHL20(2) ->ARR14(2)      <---------ATHB51                                      ----------->TBP --ARR14(2)  ------------>CBF                                   ------>NtERF2--------->ANAC46 ---------SPL7   <---------ATHB12                  ------------>CBF  <-----------TBP   accggaccggatcccaccaattataaatcgaattcgagggacattttcgcattttcaatacctcgctggccatatataaaggccacatcacactcgaaga  3157500                       --------->YAB1                 --------->ANAC46                <---------ZAT14                --------->ZAT14                <---------REM1(2)            --------->ZAT6          <---------ARR11(3)          --------->ARR11(3)                                                                        -         --------->RVE1(1)                                      <<<<<<<<<TBF1                  <-----   *TSS  --------->CCA1(1)                      ------>ZmHOX2a(1)  <<<<<<<<<TBF1               ======   acattatctaaatatctctacacaatcacattagccaaaaccatggcctcctcaagtctccatttcttcttcttcttgacacttctcttgccattcactt  3157600             ----------->HVH21            <-------MYC3            <-------MYC2            ------->MYC2            ------->MYC3            <-----------HVH21           --------->ANAC58           <---------TGA1a           =========================MYC_MYB           --------->ANAC46           --------->ANAC58           <---------ANAC55(2)           --------->TGA1a           --------->ANAC55(2)           --------->bZIP60(2)           --------->ANAC55(1)           <---------O2         <---------ALFIN1       ------>NtERF2       <---------ALFIN1         --------->At4g35610       ----------->RAV1(1)      --------->ABI4(1)     <-----------HVH21          <---------At4g35610     ------>NtERF2              <---------ATERF1(1)     --------->ABI4(1)         <---------ATERF1(1)    --------->DEAR4(1)      --------->DEAR3(1)    --------->ANAC58        ------->GAMYB  <---------ARR14(2)    --------->ANAC46       --------->ATERF1(1)    --------->RAP2.6(2)    --------->MYB46(3)    =================MYC_MYB--------->AtMYB61                                                     ---    --------->ANAC58       --------->SPL7<---------HSFC1(2)                                       ---    ------->GAMYB    ------->MYC2        <---------HSFB2a(1)             --------->ANAC46        <---    --------->DREB2C(2)    --------->DEAR3(2)--------->DEAR3(2)          --------->ANAC58       -----    --------->DEAR3(1)   <---------PCF2  --------->HSFC1(2)              --------->ANAC58       <----   --------->MYB46(3)------->MYC4        <---------MYB46(3)              <----------ID1         -----  --------->ABI4(1)  <-------MYC3      <---------MYB52(1)              ---------->DOF2         ------ <---------ALFIN1    <-------MYC2<---------ALFIN1            <---------ICU4                    ------ --------->AtMYB61   ------->MYC3--------->ATERF1(1)         --------->YAB1             ============= --------->DEAR3(1)------->MYC3--------->DEAR3(1)         --------->WOX13(1)            <----------DOF2 -------->MYB46(3) <-------MYC3<---------ALFIN1   ------>NtERF2        <---------DOF5.7(2)    ------- -----DOF2 --------->O2 ----------->HVH21--------->HSFB2a(1)<---------ATHB12           <---------DAG2 ====================bZIP_DOF --------->RAP2.3(1)--------->DEAR3(1)    ==============================   tcaccaccgccacacgtgacacatgtgcgaccgccgctcccgatggttccgacgacctctcaatcatccccattaacgccaaatgctcacctttcgcacc  3157700                                                                                         <------NtERF2                                                                                        --------->LBD16                                                                                        ------>NtERF2   --------->ANAC58                                                                    --------->ATERF1(2)   --------->ANAC58                                                                    --------->DEAR3(1)   --------->ANAC55(2)                                                                 <---------ATERF1(2)   <---------ANAC55(2)                                                                <------NtERF2   --------->ANAC46                                                                   --------->ATERF1(1)   --------->O2                                                                       --------->RAP2.3(1)   --------->TGA1a                                                                    <---------LBD16   <---------O2                                                                   <-----------HVH21   <---------TGA1a                                                               --------->TGA1a --->MYB46(1)                                                               --------->ANAC58 --->MYB83                                                                  --------->ANAC58 ------ALFIN1                                                       =======================MYC_MYB ---->MYB46(3)                                                      ------>MYB46(1) <---------DEAR3(1) -----MYB55(2)      <---------WOX13(1)                              ------>MYB83 --------->bZIP60(2) ---->DEAR3(1)   ----------->HVH21                                  -------->P   <---------O2 --->ANAC58     --------->LBD16     <---------O2                   --------->MYB55(1)------>NtERF2 --->ANAC58  ------>NtERF2      ------>ZmHOX2a(1)                 <---------MYB46(2)--------->DEAR3(1) ============bZIP_DOF           <-----------HVH21                 <---------MYB59--------->O2  ------ -->PCF2  ------>NtERF2   --------->ANAC58                        <---------MYB111(1)<---------ATERF1(1) ============bZIP_DOF     --------->ANAC58    ------>ZmHOX2a(1)   <---------MYB111(2)<---------RAP2.3(1)   cactcacgtctctgcctccgtgatagacacggtccttcacatggcctcctcagactcccatcgactcacctacctctcaagcctcgtcgccggcaaacca  3157800                    --------->DEAR3(1)                   <------NtERF2                 <---------DEAR3(1)                 --------->DEAR3(1)               <---------ATERF1(1)              --------->ANAC46              --------->O2         <---------SPL7  <---------MYB52(1)         <-----------HVH21        --------->DEAR3(1)     --------->AtMYB61<---------LBD16                                              --------->At4g35610     <---------ALFIN1------>NtERF2  <---------ALFIN1                           <---------ALFIN1     --------->DEAR3(1) --------->LBD16                                  --------->ANAC58    <---------ZAT2 --------->ATERF1(1)                     --------->ANAC46  ------>ZmHOX2a(1)      <    --------->ZAT2------>NtERF2 --------->ZAT2        <-----------HVH21  --------->ANAC58           -   ------>MYB83<-----------HVH21<---------At4g35610   <---------SPL7   <---------ALFIN1             -   ------>MYB46(1)<---------ATERF1(1)             <---------ANAC46    <------NtERF2<---------At4g35610  <---------ALFIN1<---------RAP2.3(1)         <---------HSFC1(2)      <---------ZAT18      <-------TEIL --->AtMYB61 <------NtERF2      --------->At4g35610 --------->ALFIN1--------->ANAC46   <---------TOE2(3)   aaacccacctccgtccccgtcgcctccggtaatcagctccacatcggaaactacgtggtccgagccaaactcggcactcctccacagctaatgttcatgg  3157900                                                  <---------MYB46(3)                                                 <--------P                                                <---------MYB52(1)                                                <-------GAMYB                  <------NtERF2                --------->LBD16                --------->DEAR3(1)           <---------LBD16                --------->ANAC46          --------->ZAT2                <---------DEAR3(1)        --------->At4g35610           --------->MYB52(1)             --------->ATERF1(1)           <-----------GT1                <---------ZAT2         <---------MYB52(2)               <---------At4g35610        --------->ANAC55(1)              <---------ATERF1(1)        --------->ANAC46                <---------DEAR3(1)        --------->ANAC58               <---------ZAT2        --------->ANAC58              --------->LBD16                 <----------DOF2    --------->ANAC46                  <---------ATERF1(1) --------->ANAC46 ---------HSFB2a(2)  <---------MYB52(1)<---------At4g35610--------->ANAC58 ----->ZmHOX2a(1)------>NtERF2        ------>NtERF2       <---------ALFIN1 -------->HSFB2a(2) <---------SPL7  <---------LBD16       --------->ANAC58            ------>ZmHOX2a(1)   tcctagacacaagtaacgacgccgtttggctcccttgctccggctgctccggttgttccaacgcctcaacttctttcaatacaaactcctcatccactta  3158000  Previous    Next  AGI:  At1g09750.1    Description:  chloroplast nucleoid DNA-binding protein-related. similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to unknown [Populus trichocarpa] (GB:ABK95290.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Peptidase A1; (InterPro:IPR001461) Range:  from: 3157503    to: 3159150    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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