Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -            <---------ARR14(2)                                                           ============            <---------GLK1(2)                                                            ------>ZmHOX2a(2) --------->ANAC58                                                   =================HOX2a_HOX2a   <- --------->ANAC58            --------->DAG2                         <------ZmHOX2a(2)  --------->ARR14(2) -------ATHB12               <---------TOE2(3)                      ================================= ---->WOX13(1)        ----------->GT1         ----------->GT1      <-----------HVH21   <---------ARR14(2) --->MYB46(3) <-------TEIL ---------->DOF2  ----------->GT1 <----------DOF2   ==================HOX2a_HOX2a >ANAC46    --------->ARR14(2)       ---------->DOF2    <-----------GT1       <------ZmHOX2a(1) <----   atcaagctaacacagattcacaaatagcaaaaaggttgagaaagaagagagaaaatagaaacctttcacgatcagagggaggacaaggggatcgattagg  3130700                                                  ------>ZmHOX2a(1)                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                              --------->AGP1                                              --------->ARR11(3)                                              --------->ARR14(2)                                              <---------GLK1(2)                                              <---------ARR11(3)                                              --------->ARR14(3)            --------->LBD16                   <---------ARR14(2)           --------->HSFB2a(2)               --------->GLK1(1)           <---------HSFB2a(2)           =============HOX2a_HOX2a        --------->ARR14(2)            <---------LBD16        <---------ARR14(2)            --------->HSFB2a(2)    --------->ANAC46                  <---------HSFB2a(2)    --------->ANAC55(1)          --------->HSFC1(2)                             <---------ARR14(2)    <---------ANAC55(2)          --------->HSFB2a(1)                            <---------GLK1(2)    --------->ANAC55(2)          <---------HSFC1(2)                             --------->ARR14(2)    --------->ANAC58     --------->HSFB2a(2) <---------GLK1(1)             ----------->RAV1(1)    --------->ANAC58     <---------HSFB2a(2)----------->ARR10              ------>NtERF2   <---------LBD16   --------->ARR14(2)  <------ZmHOX2a(1)       --------->bZIP60(2)       --------->TOE2(3) -------->ANAC58     <---------ARR14(2)  ==============HOX2a_HOX2a        --------->DEAR3(1)        - -------->ANAC58    ===================================HOX2a_HOX2a    --------->MYB46(3)   <--------- ==HOX2a_HOX2a      <------ZmHOX2a(1) <-----------RAV1(2)        --------->ANAC58        <---------YAB1 --------------AtSPL3--------->ARR11(3)--------->LBD16           --------->ANAC46      --------->YAB1 ==HOX2a_HOX2a      ==================================HOX2a_HOX2a--------->ANAC58--------->GLK1(2) -- --ZmHOX2a(1) ---------->DOF2    <---------HSFB2a(1)     <---------AtLEC2--------->At4g35610    -----   agaagcacggaatccagaaagaggatactggaagaaacttccaggagagatcctctcttccatggccacgaaaccagcgccagattccatcatctttaac  3130800                                                                                                   <-                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                             --------                                                                                          ---------->DOF2                                                                                        <------ZmHOX2a(1)    --------->ARR14(2)                      ----------->GT1                             =============    <---------ARR14(2)                <---------ZAT6                              --------->ZAT14<--- -------->At5g28300                ------------------------>ANAC81                <---------ZAT14---- -DOF2                          --------->DAG2                           --------->LBD16============= --------->GT1        <---------GLK1(2)   ---------->DOF2              <---------LBD16  ============= ---->ZAT6    ---------->DOF2  ---------->DOF2      ----------->GT1 ----------->HVH21   =============   actgtaaatccacttagaaagtcagattgtgcataaagtagagataaagaaaaacagagaaaaacaagttgtgaccggagatagtgaagaggagaagcgg  3130900      ----------->HVH21     ------>ZmHOX2a(2)    --------->At4g35610    <------ZmHOX2a(2)    <---------At4g35610   <-----------ARR10   <---------AGP1   --------->ARR14(2)   --------->GLK1(2)   <---------ARR11(3)   --------->ARR11(3)   <---------ARR14(2)  <------ZmHOX2a(1)  ====================HOX2a_HOX2a  =====================HOX2a_HOX2a -----NtERF2 ------DEAR3(1) ---->ATERF1(1) --NtERF2 ------>NtERF2 -----LBD16<------NtERF2                          --------->ZAT14 ----RAP2.3(1)                                    --------->ZAT18 ---RAP2.3(2)   ------>ZmHOX2a(2)                 <---------ZAT14 ---DEAR3(1)   <------ZmHOX2a(2)               --------->ALFIN1 ->At4g35610--------->DEAR3(1)--------->DAG2 <------MYB46(1) <---------ANAC58 ======================HOX2a_HOX2a           <------MYB83    <---------ANAC58            --------->ANAC58 ------ANAC46 --------->ARR14(2)            --------->MYB111(2)                          --------->ANAC58 ----->ALFIN1 <---------ARR14(2)    <---------ANAC58     --------->ZAT14         >>>>>>>>>TBF1 =====================HOX2a_HOX2a   <---------ANAC46     --------->REM1(2)    >>>>>>>>>TBF1 ===========HOX2a_HOX2a     ---------->DOF2 --------->MYB111(1)    ----------->RAV1(1)  --------->MYB59 ==========HOX2a_HOX2a--------->YAB1<---------ANAC58     <---------ZAT14  <------ZmHOX2a(1) ---------   cggaggatctgacgccgatctcaaggatgagaaaggtgtcttgaagtaggtgtggactgtgtagagtggccacagaggaagaagaagaagtaggcaaagt  3131000                                                   <---------At4g35610  <XXXXXXXXXXXXXXXXXXXXMIR420     ----------->GT1                    ------>ZmHOX2a(1)          <-----------GT1              *TSS ->DOF2   ---------->DOF2            ------>ZmHOX2a(1)         <---------RVE1(1)         <---------AHL20(2)   agggagggagtcaaaagccctactcacgatgagagactcctcctctctctctcatctcattttcgatattttctatttttgtgtttagttttttattctc  3131100                                                                    <---------ICU4                                                                    -------->HAHB4                                              --------->ATHB12      --------->YAB1                                              --------->ATHB51     <---------ATHB51                                           <--------HAHB4          --------->ICU4                                           <---------ICU4          <---------ATHB12                                          <---------YAB1         --------->YAB1                                  <---------ANAC58          <---------ZAT18      ------>MYB46(1)                                  <---------ANAC46        --------->ANAC46       ------>MYB83                                  <---------ANAC58        --------->At4g35610  --------->AtMYB61                             --------->MYB52(2)<------------CBF<-----------------AGL3                            <-------TEIL  --------->ICU4  <---------At4g35610------>MYB83           <---------At4g35610<----------DOF2<---------YAB1<-----------HVH21 ------>MYB46(1)   --------->GLK1(2)    --------->DAG2  --------->YAB1  <-----------RAV1(2)  -------->P  <---------GLK1(2)   ---------->DOF2  <---------YAB1 <----------DOF2      <---------MYB59   <-------   tagagattctgtcatcttcttcttaaaaggttctttgcgttttcattattattgggcttcaggtcactaataatgggcctaccttccctcagggacattg  3131200                          --------->AHL20(2)                          <---------AHL20(2)                --------->REM1(2)              --------->LBD16             <---------ANAC58             <---------ANAC55(1)                                                          <---------AHL20(2)             <---------ANAC46                                                            --------->AHL20(2)             <---------ANAC55(2)          --------->ARR14(2)                             <---------AHL20(1)             <---------ANAC58             <---------ARR14(2)                <---------AHL20(2)          --------->ARR14(2)           <---------WOX13(1)         <-----------GT1   <----------DOF2 -----CBF <---------ARR14(2)        <---------YAB1      --------->LBD16   <----------DOF2<---------AHL20(2)   tagcctacttccaatccgtgtaaactaaaaaaatgaagatgatggattcgagcccttccgaggcaatataactattctttaatgggcttaattttttttg  3131300                                                                                                  <--                                                                                                <----                                     --------->ETT(2)      ------->TEIL      ------>ZmHOX2a(1)<------          ----------->RAV1(1) ------>NtERF2--------->TOE1(1)                --------->TOE2(3)--------         <----------ID1     --------->LBD16--------->TOE2(1)<---------At4g35610    --------->ANAC58   <----------DOF2          <------NtERF2 --------------->AtSPL8           ------>ZmHOX2a(2) --------  <---------ANAC58         <---------ATERF1(1)   <----------DOF2   --------->ATHB12--------->ANAC58  <---------ANAC58        --------->ATERF1(1)   <---------DAG2    <---------AHL20(2)      --------->AHL20(2)   ttttgctttagacaacaaaacacattgggccgggcctggtctacctagtacctttcttatgcatctaattcatttgatcctcaacatgccaaatatttat  3131400         --------->ZAT6 --------->AHL20(2)                          --------->ATHB12                                ======== <---------AHL20(1)                 <---------ICU4                                           <------- <---------AHL20(2)                <---------YAB1                                           --------- -------AHL20(2)                 <---------ICU4                                             <-------- -----YAB1                       --------->YAB1                                             <-------- ---AHL20(2)                    <---------YAB1          <---------ANAC46                    --------- ->AHL20(2)                     --------->ICU4 <---------WOX13(1)                      <---------bZIP60(1) ->ICU4<-----------GT1  ---------->DOF2   --------->ANAC55(2) <---------AHL20(2)       --------->bZIP60(1)   tattttatttatctctacgaactcttgaaaggtcatcatcattcacttgattgcatttgcctatatttttagtgggaacgtagttagtgatgtcccctga  3131500                  --------->bZIP60(1)          --------->TOE2(3)         --------->TGA1a     <-----------HVH21    --------->bZIP60(1)    <---------bZIP60(1)    <---------TGA2(1)    --------->TGA2(1) --------->ICU4   <---------bZIP60(1)                                                <---------ANAC58 ==================MYC_MYB                                                           <---------ANAC58 ---CDC5 <---------At4g35610    <---------AHL20(2)                                   <---------ANAC46 >At4g35610       <---------TGA2(1)  <-----------GT1         <<<<<<<<<<<<<<<<<LFY--------->GLK1(1) -At4g35610--------->ZAT14     <---------AHL20(2)      ----------->GT1           <---------GLK1(1) -LBD16  --------->At4g35610   --------->AHL20(2)     --------->DAG2  --------->ANAC58    <---------ZAT14 -->RAV1(2)<---------ZAT14  --------->ATHB12         ---------->DOF2  --------->ANAC58--------->LBD16   gcgatgatgtcacctcagtgatgtaatggatgatttattttacttaaaaattctaaaaagtaaaaacaatggacgaaaacaagaattccgtctatagtga  3131600  Previous    Next  AGI:  At1g09660.1    Description:  KH domain-containing quaking protein, putative. similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G26480.1); similar to unknown [Populus trichocarpa] (GB:ABK95574.1); contains InterPro domain K Homology; (InterPro:IPR004087) Range:  from: 3127773    to: 3131096    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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